Wall clock time and date at job start Tue Mar 31 2020 20:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47023 * 2 1 4 4 C 1.52998 * 109.47523 * 239.99254 * 2 1 3 5 5 C 1.50699 * 109.46700 * 65.00024 * 4 2 1 6 6 H 1.07999 * 120.00803 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99889 * 180.02562 * 5 4 2 8 8 N 1.31520 * 120.00186 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00030 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 89.99863 * 9 7 5 11 11 H 1.48503 * 109.47261 * 330.00044 * 9 7 5 12 12 H 1.48500 * 109.47454 * 210.00037 * 9 7 5 13 13 C 1.50706 * 109.46995 * 119.99412 * 2 1 3 14 14 N 1.30297 * 126.34622 * 60.02181 * 13 2 1 15 15 N 1.28526 * 110.05297 * 180.02562 * 14 13 2 16 16 C 1.31217 * 109.85849 * 0.02562 * 15 14 13 17 17 N 1.38590 * 126.47199 * 180.02562 * 16 15 14 18 18 C 1.48554 * 111.00116 * 115.39242 * 17 16 15 19 19 C 1.54371 * 104.59588 * 200.96086 * 18 17 16 20 20 C 1.54254 * 105.06131 * 23.85688 * 19 18 17 21 21 C 1.48560 * 110.99751 * 359.97438 * 17 16 15 22 22 H 1.09001 * 110.41628 * 40.14224 * 21 17 16 23 23 C 1.52998 * 110.41442 * 277.82036 * 21 17 16 24 24 O 1.43754 * 109.62905 * 299.36743 * 23 21 17 25 25 C 1.44787 * 104.81380 * 215.80716 * 24 23 21 26 26 C 1.54911 * 101.72207 * 36.10120 * 25 24 23 27 27 O 1.43365 * 109.63421 * 180.02562 * 23 21 17 28 28 N 1.36449 * 107.05860 * 359.73844 * 16 15 14 29 29 C 1.46494 * 127.14406 * 180.26357 * 28 16 15 30 30 H 1.09008 * 109.47033 * 60.00904 * 1 2 3 31 31 H 1.09004 * 109.47207 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47257 * 300.00762 * 1 2 3 33 33 H 1.09004 * 109.47139 * 305.00400 * 4 2 1 34 34 H 1.08997 * 109.47675 * 185.00000 * 4 2 1 35 35 H 0.96998 * 120.00124 * 180.02562 * 8 7 5 36 36 H 1.09003 * 110.41245 * 319.74040 * 18 17 16 37 37 H 1.09005 * 110.41410 * 82.18152 * 18 17 16 38 38 H 1.09005 * 110.32774 * 264.95567 * 19 18 17 39 39 H 1.09008 * 110.41032 * 142.79732 * 19 18 17 40 40 H 1.09002 * 110.32089 * 241.10354 * 20 19 18 41 41 H 1.08999 * 110.41406 * 118.94163 * 20 19 18 42 42 H 1.09004 * 109.63045 * 59.60350 * 23 21 17 43 43 H 1.08999 * 110.97714 * 277.99225 * 25 24 23 44 44 H 1.09003 * 111.00716 * 154.22633 * 25 24 23 45 45 H 1.09002 * 110.69615 * 206.04263 * 26 25 24 46 46 H 1.08998 * 110.84273 * 82.90916 * 26 25 24 47 47 H 1.09005 * 109.47377 * 270.20240 * 29 28 16 48 48 H 1.09004 * 109.46959 * 30.19361 * 29 28 16 49 49 H 1.08998 * 109.47839 * 150.19735 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.6414 0.0568 -2.4765 6 1 1.0807 0.9743 -2.3758 7 6 1.9925 -0.4026 -3.7282 8 7 1.6450 0.2768 -4.7994 9 14 2.9617 -1.9899 -3.9026 10 1 2.0216 -3.1337 -4.0192 11 1 3.8236 -2.1775 -2.7080 12 1 3.8102 -1.9207 -5.1193 13 6 2.0323 -0.7103 1.2306 14 7 1.7953 -1.9490 1.5581 15 7 2.3759 -2.2297 2.6698 16 6 3.0193 -1.1764 3.1151 17 7 3.7616 -1.0972 4.2828 18 6 5.1975 -0.8587 3.9857 19 6 5.9402 -1.3243 5.2564 20 6 4.9878 -2.3334 5.9303 21 6 3.7496 -2.3925 5.0101 22 1 3.8341 -3.2230 4.3091 23 6 2.4724 -2.5257 5.8418 24 8 2.4118 -1.4625 6.8074 25 6 1.8076 -2.0607 7.9793 26 6 2.4044 -3.4898 7.9464 27 8 2.4784 -3.7799 6.5363 28 7 2.8249 -0.1756 2.2082 29 6 3.3533 1.1893 2.2703 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5140 0.8899 33 1 1.6054 -1.7200 -1.2949 34 1 3.1264 -0.7996 -1.2055 35 1 1.8917 -0.0466 -5.6800 36 1 5.5107 -1.4490 3.1246 37 1 5.3778 0.2014 3.8069 38 1 6.1252 -0.4782 5.9183 39 1 6.8797 -1.8093 4.9914 40 1 4.7053 -1.9825 6.9229 41 1 5.4580 -3.3145 5.9959 42 1 1.6022 -2.4732 5.1875 43 1 0.7219 -2.0890 7.8872 44 1 2.1067 -1.5336 8.8854 45 1 1.7437 -4.1950 8.4508 46 1 3.3975 -3.5058 8.3954 47 1 2.6475 1.8284 2.8010 48 1 4.3074 1.1859 2.7973 49 1 3.4981 1.5693 1.2590 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646689799.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:35 Heat of formation + Delta-G solvation = -16.507383 kcal Electronic energy + Delta-G solvation = -30606.065075 eV Core-core repulsion = 26569.302711 eV Total energy + Delta-G solvation = -4036.762364 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.10568 -41.66429 -39.74887 -37.18788 -36.02408 -35.96415 -34.42897 -33.23411 -32.12403 -30.05852 -29.59706 -29.00227 -28.46757 -25.76021 -25.57022 -24.12056 -23.74055 -23.28898 -21.93517 -21.48760 -20.33919 -19.10480 -18.55161 -18.29645 -17.82744 -17.46098 -17.19402 -16.99415 -16.32651 -16.10574 -15.82322 -15.37038 -15.23862 -15.05755 -14.70535 -14.51168 -14.42277 -14.17935 -13.99113 -13.90548 -13.73888 -13.63448 -13.42636 -13.06521 -12.97704 -12.77162 -12.64410 -12.49933 -12.32929 -12.28821 -11.99312 -11.90081 -11.76470 -11.60929 -11.50024 -11.28628 -11.13813 -11.10149 -10.81327 -10.76064 -10.65953 -9.42165 -8.29100 -6.30530 0.69257 1.17696 1.31756 1.34915 1.44844 1.73538 2.29291 2.33957 2.64530 2.97948 3.06353 3.27998 3.39755 3.52331 3.65184 3.68969 3.85248 3.87896 4.02435 4.03713 4.13196 4.19840 4.22934 4.26280 4.31301 4.38066 4.40433 4.46341 4.58552 4.61519 4.62557 4.73252 4.75514 4.82021 4.87050 4.93811 4.97022 4.99826 5.07907 5.09464 5.13514 5.22414 5.30633 5.38379 5.46220 5.52850 5.65691 6.02832 6.12249 6.26890 6.75195 7.33318 7.70246 8.86285 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019043 B = 0.002882 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.982741 B = 9711.983765 C = 9928.490806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.017 3.983 3 H 0.097 0.903 4 C 0.010 3.990 5 C -0.513 4.513 6 H 0.057 0.943 7 C 0.018 3.982 8 N -0.941 5.941 9 Si 0.931 3.069 10 H -0.273 1.273 11 H -0.263 1.263 12 H -0.279 1.279 13 C 0.198 3.802 14 N -0.322 5.322 15 N -0.358 5.358 16 C 0.338 3.662 17 N -0.412 5.412 18 C 0.028 3.972 19 C -0.109 4.109 20 C -0.107 4.107 21 C 0.068 3.932 22 H 0.068 0.932 23 C 0.261 3.739 24 O -0.373 6.373 25 C 0.007 3.993 26 C 0.015 3.985 27 O -0.398 6.398 28 N -0.477 5.477 29 C 0.065 3.935 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.011 0.989 34 H 0.007 0.993 35 H 0.266 0.734 36 H 0.041 0.959 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.140 0.860 45 H 0.119 0.881 46 H 0.095 0.905 47 H 0.098 0.902 48 H 0.111 0.889 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.148 -0.674 30.983 32.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.004 4.004 3 H 0.115 0.885 4 C -0.029 4.029 5 C -0.551 4.551 6 H 0.075 0.925 7 C -0.180 4.180 8 N -0.582 5.582 9 Si 0.757 3.243 10 H -0.199 1.199 11 H -0.188 1.188 12 H -0.205 1.205 13 C -0.071 4.071 14 N -0.160 5.160 15 N -0.202 5.202 16 C -0.019 4.019 17 N -0.137 5.137 18 C -0.098 4.098 19 C -0.147 4.147 20 C -0.146 4.146 21 C -0.041 4.041 22 H 0.086 0.914 23 C 0.165 3.835 24 O -0.293 6.293 25 C -0.069 4.069 26 C -0.061 4.061 27 O -0.319 6.319 28 N -0.171 5.171 29 C -0.076 4.076 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.030 0.970 34 H 0.026 0.974 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.130 0.870 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.069 0.931 43 H 0.092 0.908 44 H 0.157 0.843 45 H 0.137 0.863 46 H 0.113 0.887 47 H 0.116 0.884 48 H 0.129 0.871 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.498 -1.609 30.946 32.132 hybrid contribution 0.555 -0.085 -1.251 1.371 sum 9.053 -1.694 29.696 31.091 Atomic orbital electron populations 1.21591 0.92601 1.01861 1.01736 1.19546 0.97021 0.97942 0.85910 0.88490 1.19416 0.95372 0.95770 0.92321 1.21263 1.34734 1.09043 0.90075 0.92493 1.25682 0.96689 0.99781 0.95798 1.70006 1.48576 1.41005 0.98623 0.85946 0.79657 0.80901 0.77818 1.19852 1.18797 1.20465 1.25257 0.95861 0.91898 0.94065 1.73875 1.21513 1.12687 1.07942 1.74446 1.16083 1.22373 1.07331 1.23048 1.02113 0.85663 0.91097 1.62181 1.09717 1.31395 1.10439 1.23505 0.83440 1.03527 0.99370 1.22301 0.97983 0.99841 0.94538 1.22284 0.92436 1.00893 0.98946 1.22984 0.96863 0.89007 0.95222 0.91416 1.23394 0.95927 0.75148 0.89081 1.89299 1.82152 1.32896 1.24974 1.24680 0.98902 0.93254 0.90023 1.24512 1.03433 0.97147 0.80974 1.88897 1.95550 1.27752 1.19686 1.46256 1.39585 1.13565 1.17669 1.22521 1.01757 0.77313 1.06012 0.91385 0.93495 0.92143 0.97045 0.97426 0.92464 0.94011 0.87035 0.88381 0.88682 0.89286 0.89438 0.93056 0.90792 0.84258 0.86259 0.88655 0.88362 0.87057 0.88096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.56 8.99 71.98 0.65 -3.91 16 2 C 0.02 0.67 2.70 -11.54 -0.03 0.63 16 3 H 0.10 3.45 6.94 -2.39 -0.02 3.44 16 4 C 0.01 0.47 3.50 29.85 0.10 0.57 16 5 C -0.51 -28.54 8.96 25.60 0.23 -28.31 16 6 H 0.06 3.33 7.30 -2.91 -0.02 3.31 16 7 C 0.02 1.06 5.47 84.65 0.46 1.52 16 8 N -0.94 -57.84 13.96 21.45 0.30 -57.54 16 9 Si 0.93 46.02 27.47 68.60 1.88 47.90 16 10 H -0.27 -13.35 7.11 99.48 0.71 -12.65 16 11 H -0.26 -12.75 6.54 99.48 0.65 -12.10 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 13 C 0.20 7.71 6.58 137.64 0.91 8.62 16 14 N -0.32 -14.18 12.18 -49.53 -0.60 -14.79 16 15 N -0.36 -14.48 10.55 -58.00 -0.61 -15.10 16 16 C 0.34 11.16 6.75 260.11 1.76 12.92 16 17 N -0.41 -10.42 5.03 -668.59 -3.36 -13.78 16 18 C 0.03 0.51 5.91 86.45 0.51 1.02 16 19 C -0.11 -1.35 7.00 31.48 0.22 -1.13 16 20 C -0.11 -1.71 6.27 31.49 0.20 -1.51 16 21 C 0.07 1.66 2.05 45.06 0.09 1.76 16 22 H 0.07 2.04 7.42 -2.39 -0.02 2.02 16 23 C 0.26 6.69 3.75 71.98 0.27 6.96 16 24 O -0.37 -8.17 10.18 -126.22 -1.29 -9.45 16 25 C 0.01 0.09 7.95 72.64 0.58 0.67 16 26 C 0.01 0.19 8.07 72.64 0.59 0.77 16 27 O -0.40 -9.21 11.01 -126.22 -1.39 -10.60 16 28 N -0.48 -15.02 3.21 -538.17 -1.73 -16.75 16 29 C 0.06 1.32 10.84 127.77 1.39 2.71 16 30 H 0.07 2.73 6.95 -2.38 -0.02 2.71 16 31 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 34 H 0.01 0.37 7.20 -2.39 -0.02 0.35 16 35 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 36 H 0.04 0.91 7.97 -2.39 -0.02 0.89 16 37 H 0.11 1.56 6.11 -2.38 -0.01 1.55 16 38 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.09 1.30 7.04 -2.39 -0.02 1.28 16 41 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.05 1.71 7.62 -2.38 -0.02 1.69 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 48 H 0.11 1.67 5.54 -2.38 -0.01 1.66 16 49 H 0.10 1.99 7.23 -2.39 -0.02 1.98 16 Total: -1.00 -78.02 383.76 2.01 -76.01 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 0.89 Total: 10.80 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 7.91 Total: 3.29 kcal Atomic # 7 Polarization: -111.94 SS G_CDS: -6.01 Total: -117.95 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -2.68 Total: -20.05 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.88 Total: 47.90 kcal Total: -78.02 2.01 -76.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646689799.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.501 kcal (2) G-P(sol) polarization free energy of solvation -78.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds