Wall clock time and date at job start Tue Mar 31 2020 20:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46600 * 2 1 4 4 C 1.53002 * 109.46872 * 120.00009 * 2 1 3 5 5 C 1.50696 * 109.46997 * 294.99741 * 4 2 1 6 6 H 1.07999 * 120.00319 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99717 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47353 * 269.99586 * 9 7 5 11 11 H 1.48501 * 109.47293 * 30.00037 * 9 7 5 12 12 H 1.48504 * 109.46680 * 149.99835 * 9 7 5 13 13 C 1.50703 * 109.46993 * 240.00118 * 2 1 3 14 14 N 1.30291 * 126.34883 * 299.68747 * 13 2 1 15 15 N 1.28525 * 110.05429 * 179.82644 * 14 13 2 16 16 C 1.31223 * 109.85769 * 0.44714 * 15 14 13 17 17 N 1.38576 * 126.47097 * 179.69449 * 16 15 14 18 18 C 1.47436 * 111.00114 * 239.91810 * 17 16 15 19 19 C 1.54327 * 107.23357 * 123.26063 * 18 17 16 20 20 C 1.55142 * 103.01830 * 22.28234 * 19 18 17 21 21 C 1.47853 * 111.00156 * 0.76359 * 17 16 15 22 22 H 1.08997 * 110.36904 * 332.46505 * 21 17 16 23 23 C 1.53003 * 110.37349 * 94.80559 * 21 17 16 24 24 O 1.43747 * 109.62935 * 303.90606 * 23 21 17 25 25 C 1.44592 * 104.92078 * 215.70924 * 24 23 21 26 26 C 1.54920 * 101.63162 * 36.26972 * 25 24 23 27 27 O 1.43365 * 109.62840 * 184.69195 * 23 21 17 28 28 N 1.36449 * 107.05261 * 359.73225 * 16 15 14 29 29 C 1.46505 * 127.13429 * 180.02562 * 28 16 15 30 30 H 1.08997 * 109.47250 * 299.99322 * 1 2 3 31 31 H 1.08996 * 109.46941 * 60.00305 * 1 2 3 32 32 H 1.09006 * 109.46928 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46767 * 175.00092 * 4 2 1 34 34 H 1.09002 * 109.47113 * 55.00432 * 4 2 1 35 35 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.89250 * 242.66041 * 18 17 16 37 37 H 1.09000 * 109.89060 * 3.69504 * 18 17 16 38 38 H 1.09003 * 110.70419 * 140.66862 * 19 18 17 39 39 H 1.09002 * 110.70099 * 263.72304 * 19 18 17 40 40 H 1.09000 * 110.98852 * 82.43960 * 20 19 18 41 41 H 1.08993 * 110.98917 * 206.21604 * 20 19 18 42 42 H 1.08999 * 109.62541 * 64.29970 * 23 21 17 43 43 H 1.09000 * 111.08626 * 278.16218 * 25 24 23 44 44 H 1.08999 * 110.98220 * 154.33110 * 25 24 23 45 45 H 1.08993 * 110.69398 * 205.95824 * 26 25 24 46 46 H 1.09001 * 110.84042 * 82.82609 * 26 25 24 47 47 H 1.08995 * 109.46804 * 270.00320 * 29 28 16 48 48 H 1.08996 * 109.47063 * 30.00034 * 29 28 16 49 49 H 1.09000 * 109.46863 * 149.99990 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 0.0571 2.4765 6 1 1.0800 0.9742 2.3757 7 6 1.9933 -0.4017 3.7283 8 7 1.6449 0.2772 4.7994 9 14 2.9648 -1.9877 3.9026 10 1 2.0264 -3.1327 4.0195 11 1 3.8268 -2.1740 2.7079 12 1 3.8134 -1.9170 5.1193 13 6 2.0324 -0.7104 -1.2305 14 7 1.7998 -1.9506 -1.5553 15 7 2.3763 -2.2300 -2.6694 16 6 3.0209 -1.1770 -3.1141 17 7 3.7642 -1.0983 -4.2810 18 6 5.1677 -0.7522 -3.9912 19 6 6.0477 -1.8660 -4.5966 20 6 5.1302 -2.4838 -5.6845 21 6 3.7375 -2.3821 -5.0139 22 1 3.5881 -3.2109 -4.3219 23 6 2.6353 -2.3671 -6.0749 24 8 1.3722 -2.0730 -5.4549 25 6 0.4064 -2.8644 -6.1840 26 6 1.2160 -4.1520 -6.4783 27 8 2.5510 -3.6545 -6.7001 28 7 2.8216 -0.1746 -2.2101 29 6 3.3445 1.1924 -2.2758 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1264 -0.7995 1.2056 34 1 1.6054 -1.7199 1.2951 35 1 1.8922 -0.0457 5.6800 36 1 5.4155 0.2058 -4.4484 37 1 5.3216 -0.6994 -2.9134 38 1 6.9477 -1.4452 -5.0450 39 1 6.3060 -2.6071 -3.8401 40 1 5.1649 -1.8981 -6.6031 41 1 5.3970 -3.5230 -5.8761 42 1 2.8600 -1.6094 -6.8255 43 1 0.1115 -2.3689 -7.1090 44 1 -0.4646 -3.0837 -5.5663 45 1 0.8370 -4.6497 -7.3708 46 1 1.1938 -4.8279 -5.6234 47 1 4.3135 1.2351 -1.7786 48 1 3.4579 1.4883 -3.3187 49 1 2.6509 1.8709 -1.7790 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646689802.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:41 Heat of formation + Delta-G solvation = 4.780147 kcal Electronic energy + Delta-G solvation = -30876.233325 eV Core-core repulsion = 26840.394057 eV Total energy + Delta-G solvation = -4035.839268 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.63838 -40.63026 -38.92159 -35.44113 -35.11433 -34.60214 -32.53410 -31.83049 -31.34919 -28.80271 -28.32570 -27.35236 -27.30098 -24.52336 -23.95769 -23.44327 -22.24257 -21.92969 -20.83936 -20.31945 -18.98618 -17.76169 -17.12144 -17.08201 -16.78627 -16.36809 -15.96791 -15.64897 -15.33799 -14.62937 -14.42444 -14.12477 -13.91854 -13.77070 -13.49407 -13.32979 -13.24228 -13.13937 -12.83601 -12.70628 -12.59256 -12.39130 -11.98336 -11.88951 -11.62363 -11.41917 -11.35834 -11.17089 -11.08431 -10.91346 -10.78025 -10.40429 -10.35364 -10.09799 -9.94140 -9.81330 -9.78315 -9.73513 -9.30695 -9.16001 -8.53112 -7.93185 -6.05057 -4.03181 2.13372 2.45064 3.14501 3.34074 3.34911 3.41549 3.48132 3.61750 3.98705 4.22929 4.30229 4.43448 4.47230 4.61128 4.68962 4.77873 4.84075 4.87739 4.93153 5.10454 5.11115 5.15554 5.25328 5.27236 5.29089 5.31575 5.37874 5.44807 5.46511 5.52033 5.55215 5.65530 5.72354 5.75773 5.91645 6.00041 6.10467 6.20057 6.28118 6.52683 6.68558 6.75416 6.81873 6.92529 7.04459 7.22622 7.39615 7.43690 7.76500 8.49803 8.97800 9.26190 9.57739 11.07642 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015640 B = 0.003239 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.834998 B = 8641.640254 C = 9136.136016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.009 3.991 3 H 0.077 0.923 4 C 0.002 3.998 5 C -0.518 4.518 6 H 0.076 0.924 7 C 0.071 3.929 8 N -0.902 5.902 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.267 1.267 12 H -0.289 1.289 13 C 0.206 3.794 14 N -0.286 5.286 15 N -0.311 5.311 16 C 0.340 3.660 17 N -0.435 5.435 18 C 0.042 3.958 19 C -0.139 4.139 20 C -0.116 4.116 21 C 0.072 3.928 22 H 0.097 0.903 23 C 0.253 3.747 24 O -0.352 6.352 25 C 0.016 3.984 26 C 0.023 3.977 27 O -0.385 6.385 28 N -0.485 5.485 29 C 0.078 3.922 30 H 0.078 0.922 31 H 0.034 0.966 32 H 0.059 0.941 33 H 0.012 0.988 34 H 0.026 0.974 35 H 0.263 0.737 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.071 0.929 44 H 0.107 0.893 45 H 0.098 0.902 46 H 0.079 0.921 47 H 0.075 0.925 48 H 0.087 0.913 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.605 -2.310 -26.113 26.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.012 4.012 3 H 0.095 0.905 4 C -0.036 4.036 5 C -0.555 4.555 6 H 0.094 0.906 7 C -0.131 4.131 8 N -0.541 5.541 9 Si 0.703 3.297 10 H -0.200 1.200 11 H -0.192 1.192 12 H -0.215 1.215 13 C -0.062 4.062 14 N -0.124 5.124 15 N -0.155 5.155 16 C -0.016 4.016 17 N -0.160 5.160 18 C -0.085 4.085 19 C -0.177 4.177 20 C -0.154 4.154 21 C -0.036 4.036 22 H 0.115 0.885 23 C 0.157 3.843 24 O -0.271 6.271 25 C -0.060 4.060 26 C -0.053 4.053 27 O -0.305 6.305 28 N -0.180 5.180 29 C -0.065 4.065 30 H 0.097 0.903 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.031 0.969 34 H 0.045 0.955 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.089 0.911 44 H 0.125 0.875 45 H 0.116 0.884 46 H 0.097 0.903 47 H 0.094 0.906 48 H 0.106 0.894 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.001 -3.278 -26.104 26.780 hybrid contribution 1.223 0.105 0.500 1.325 sum 6.223 -3.173 -25.604 26.540 Atomic orbital electron populations 1.21683 0.93236 1.02515 1.01033 1.19719 0.96491 0.97525 0.87443 0.90511 1.19575 0.95871 0.96593 0.91571 1.21041 1.35905 1.09709 0.88891 0.90555 1.24942 0.95455 0.96819 0.95850 1.69902 1.46885 1.39250 0.98036 0.86839 0.80812 0.84515 0.77535 1.20006 1.19196 1.21469 1.25493 0.95125 0.92147 0.93392 1.73967 1.20300 1.11262 1.06915 1.74453 1.13758 1.20804 1.06456 1.22331 1.02678 0.86249 0.90391 1.59884 1.10107 1.31839 1.14166 1.23008 0.84848 0.99901 1.00774 1.22782 0.98545 0.97901 0.98476 1.22666 0.92129 1.02417 0.98214 1.22960 0.94946 0.90427 0.95254 0.88472 1.23875 0.85576 0.84376 0.90522 1.89399 1.15595 1.65760 1.56356 1.24311 0.94257 0.90011 0.97461 1.24195 0.81412 0.97036 1.02654 1.88826 1.31730 1.33833 1.76117 1.46080 1.40958 1.11867 1.19139 1.22013 1.00544 0.79910 1.04077 0.90275 0.94733 0.92176 0.96944 0.95524 0.92707 0.89181 0.91877 0.89728 0.90763 0.90096 0.89412 0.89723 0.91094 0.87460 0.88425 0.90273 0.90599 0.89424 0.88884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.99 37.16 0.33 -2.10 16 2 C 0.01 0.19 2.70 -91.77 -0.25 -0.06 16 3 H 0.08 1.44 6.94 -51.93 -0.36 1.08 16 4 C 0.00 0.05 3.50 -27.88 -0.10 -0.04 16 5 C -0.52 -14.31 8.96 -34.44 -0.31 -14.62 16 6 H 0.08 2.20 7.30 -52.49 -0.38 1.82 16 7 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 8 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 9 Si 0.88 22.24 27.47 -169.99 -4.67 17.57 16 10 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.72 6.54 56.52 0.37 -6.35 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 C 0.21 4.07 6.58 -154.02 -1.01 3.06 16 14 N -0.29 -6.23 12.18 32.99 0.40 -5.83 16 15 N -0.31 -6.18 10.33 30.31 0.31 -5.87 16 16 C 0.34 5.72 6.17 -318.88 -1.97 3.75 16 17 N -0.44 -5.69 4.79 -163.85 -0.79 -6.48 16 18 C 0.04 0.42 6.04 -2.83 -0.02 0.41 16 19 C -0.14 -1.15 6.94 -24.90 -0.17 -1.33 16 20 C -0.12 -1.02 6.40 -24.59 -0.16 -1.18 16 21 C 0.07 0.89 2.31 -66.18 -0.15 0.74 16 22 H 0.10 1.48 6.90 -51.93 -0.36 1.12 16 23 C 0.25 3.03 3.73 37.16 0.14 3.17 16 24 O -0.35 -4.97 10.13 -59.05 -0.60 -5.57 16 25 C 0.02 0.16 7.95 38.17 0.30 0.47 16 26 C 0.02 0.22 8.07 38.17 0.31 0.52 16 27 O -0.38 -4.36 11.11 -59.05 -0.66 -5.01 16 28 N -0.49 -8.02 3.16 -121.46 -0.38 -8.40 16 29 C 0.08 0.91 9.89 59.85 0.59 1.50 16 30 H 0.08 1.58 6.95 -51.93 -0.36 1.22 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 34 H 0.03 0.68 7.57 -51.93 -0.39 0.29 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.73 7.29 -51.93 -0.38 0.36 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.61 7.99 -51.93 -0.41 0.19 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.09 0.92 8.05 -51.93 -0.42 0.50 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 48 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.09 1.02 7.23 -51.93 -0.38 0.64 16 LS Contribution 387.02 15.07 5.83 5.83 Total: -1.00 -35.18 387.02 -10.38 -45.57 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -8.06 Total: -1.39 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -2.56 Total: -3.77 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: 0.32 Total: -53.23 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -1.25 Total: -10.58 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.67 Total: 17.57 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.18 -10.38 -45.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646689802.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.348 kcal (2) G-P(sol) polarization free energy of solvation -35.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds