Wall clock time and date at job start Tue Mar 31 2020 20:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46600 * 2 1 4 4 C 1.53002 * 109.46872 * 120.00009 * 2 1 3 5 5 C 1.50696 * 109.46997 * 294.99741 * 4 2 1 6 6 H 1.07999 * 120.00319 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99717 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47353 * 269.99586 * 9 7 5 11 11 H 1.48501 * 109.47293 * 30.00037 * 9 7 5 12 12 H 1.48504 * 109.46680 * 149.99835 * 9 7 5 13 13 C 1.50703 * 109.46993 * 240.00118 * 2 1 3 14 14 N 1.30291 * 126.34883 * 299.68747 * 13 2 1 15 15 N 1.28525 * 110.05429 * 179.82644 * 14 13 2 16 16 C 1.31223 * 109.85769 * 0.44714 * 15 14 13 17 17 N 1.38576 * 126.47097 * 179.69449 * 16 15 14 18 18 C 1.47436 * 111.00114 * 239.91810 * 17 16 15 19 19 C 1.54327 * 107.23357 * 123.26063 * 18 17 16 20 20 C 1.55142 * 103.01830 * 22.28234 * 19 18 17 21 21 C 1.47853 * 111.00156 * 0.76359 * 17 16 15 22 22 H 1.08997 * 110.36904 * 332.46505 * 21 17 16 23 23 C 1.53003 * 110.37349 * 94.80559 * 21 17 16 24 24 O 1.43747 * 109.62935 * 303.90606 * 23 21 17 25 25 C 1.44592 * 104.92078 * 215.70924 * 24 23 21 26 26 C 1.54920 * 101.63162 * 36.26972 * 25 24 23 27 27 O 1.43365 * 109.62840 * 184.69195 * 23 21 17 28 28 N 1.36449 * 107.05261 * 359.73225 * 16 15 14 29 29 C 1.46505 * 127.13429 * 180.02562 * 28 16 15 30 30 H 1.08997 * 109.47250 * 299.99322 * 1 2 3 31 31 H 1.08996 * 109.46941 * 60.00305 * 1 2 3 32 32 H 1.09006 * 109.46928 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46767 * 175.00092 * 4 2 1 34 34 H 1.09002 * 109.47113 * 55.00432 * 4 2 1 35 35 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.89250 * 242.66041 * 18 17 16 37 37 H 1.09000 * 109.89060 * 3.69504 * 18 17 16 38 38 H 1.09003 * 110.70419 * 140.66862 * 19 18 17 39 39 H 1.09002 * 110.70099 * 263.72304 * 19 18 17 40 40 H 1.09000 * 110.98852 * 82.43960 * 20 19 18 41 41 H 1.08993 * 110.98917 * 206.21604 * 20 19 18 42 42 H 1.08999 * 109.62541 * 64.29970 * 23 21 17 43 43 H 1.09000 * 111.08626 * 278.16218 * 25 24 23 44 44 H 1.08999 * 110.98220 * 154.33110 * 25 24 23 45 45 H 1.08993 * 110.69398 * 205.95824 * 26 25 24 46 46 H 1.09001 * 110.84042 * 82.82609 * 26 25 24 47 47 H 1.08995 * 109.46804 * 270.00320 * 29 28 16 48 48 H 1.08996 * 109.47063 * 30.00034 * 29 28 16 49 49 H 1.09000 * 109.46863 * 149.99990 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 0.0571 2.4765 6 1 1.0800 0.9742 2.3757 7 6 1.9933 -0.4017 3.7283 8 7 1.6449 0.2772 4.7994 9 14 2.9648 -1.9877 3.9026 10 1 2.0264 -3.1327 4.0195 11 1 3.8268 -2.1740 2.7079 12 1 3.8134 -1.9170 5.1193 13 6 2.0324 -0.7104 -1.2305 14 7 1.7998 -1.9506 -1.5553 15 7 2.3763 -2.2300 -2.6694 16 6 3.0209 -1.1770 -3.1141 17 7 3.7642 -1.0983 -4.2810 18 6 5.1677 -0.7522 -3.9912 19 6 6.0477 -1.8660 -4.5966 20 6 5.1302 -2.4838 -5.6845 21 6 3.7375 -2.3821 -5.0139 22 1 3.5881 -3.2109 -4.3219 23 6 2.6353 -2.3671 -6.0749 24 8 1.3722 -2.0730 -5.4549 25 6 0.4064 -2.8644 -6.1840 26 6 1.2160 -4.1520 -6.4783 27 8 2.5510 -3.6545 -6.7001 28 7 2.8216 -0.1746 -2.2101 29 6 3.3445 1.1924 -2.2758 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1264 -0.7995 1.2056 34 1 1.6054 -1.7199 1.2951 35 1 1.8922 -0.0457 5.6800 36 1 5.4155 0.2058 -4.4484 37 1 5.3216 -0.6994 -2.9134 38 1 6.9477 -1.4452 -5.0450 39 1 6.3060 -2.6071 -3.8401 40 1 5.1649 -1.8981 -6.6031 41 1 5.3970 -3.5230 -5.8761 42 1 2.8600 -1.6094 -6.8255 43 1 0.1115 -2.3689 -7.1090 44 1 -0.4646 -3.0837 -5.5663 45 1 0.8370 -4.6497 -7.3708 46 1 1.1938 -4.8279 -5.6234 47 1 4.3135 1.2351 -1.7786 48 1 3.4579 1.4883 -3.3187 49 1 2.6509 1.8709 -1.7790 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646689802.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:40 Heat of formation + Delta-G solvation = -17.582631 kcal Electronic energy + Delta-G solvation = -30877.203048 eV Core-core repulsion = 26840.394057 eV Total energy + Delta-G solvation = -4036.808991 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.98748 -41.50493 -39.83662 -37.14974 -36.01099 -35.88233 -34.40794 -33.08893 -32.16251 -30.01776 -29.59303 -28.96895 -28.38372 -25.76933 -25.30028 -24.25963 -23.64402 -23.08998 -21.93043 -21.44499 -20.41336 -19.10408 -18.72168 -18.02043 -17.91114 -17.41024 -17.17809 -16.67688 -16.31296 -16.22840 -15.73039 -15.34502 -15.22317 -14.95385 -14.69612 -14.58772 -14.37515 -14.13639 -13.99646 -13.85422 -13.66260 -13.54410 -13.37307 -13.01207 -12.96318 -12.72123 -12.68900 -12.43782 -12.34585 -12.16858 -11.96871 -11.91827 -11.78305 -11.66834 -11.47987 -11.25616 -11.15993 -11.05503 -10.81239 -10.76042 -10.50140 -9.24561 -8.29269 -6.30555 0.83131 1.25507 1.31315 1.34190 1.44548 1.88908 2.29478 2.33815 2.69579 3.06167 3.09751 3.37386 3.47942 3.52654 3.69538 3.77061 3.85783 3.94065 3.98844 4.05896 4.09810 4.23352 4.27527 4.33903 4.36624 4.39836 4.47494 4.51550 4.55727 4.59587 4.63083 4.72397 4.73671 4.85126 4.93834 4.96110 5.00966 5.02287 5.07437 5.11281 5.22969 5.23554 5.32165 5.43289 5.52954 5.55418 5.68734 6.08443 6.21092 6.27160 6.75031 7.33262 7.85077 8.86234 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015640 B = 0.003239 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.834998 B = 8641.640254 C = 9136.136016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.017 3.983 3 H 0.094 0.906 4 C 0.011 3.989 5 C -0.514 4.514 6 H 0.056 0.944 7 C 0.019 3.981 8 N -0.941 5.941 9 Si 0.931 3.069 10 H -0.272 1.272 11 H -0.265 1.265 12 H -0.279 1.279 13 C 0.192 3.808 14 N -0.324 5.324 15 N -0.346 5.346 16 C 0.357 3.643 17 N -0.430 5.430 18 C 0.037 3.963 19 C -0.132 4.132 20 C -0.106 4.106 21 C 0.066 3.934 22 H 0.061 0.939 23 C 0.253 3.747 24 O -0.389 6.389 25 C 0.012 3.988 26 C 0.023 3.977 27 O -0.392 6.392 28 N -0.483 5.483 29 C 0.068 3.932 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.006 0.994 34 H 0.010 0.990 35 H 0.266 0.734 36 H 0.122 0.878 37 H 0.046 0.954 38 H 0.117 0.883 39 H 0.060 0.940 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.106 0.894 45 H 0.131 0.869 46 H 0.065 0.935 47 H 0.091 0.909 48 H 0.112 0.888 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.383 -1.793 -28.993 29.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.003 4.003 3 H 0.112 0.888 4 C -0.027 4.027 5 C -0.552 4.552 6 H 0.075 0.925 7 C -0.179 4.179 8 N -0.582 5.582 9 Si 0.757 3.243 10 H -0.198 1.198 11 H -0.189 1.189 12 H -0.204 1.204 13 C -0.077 4.077 14 N -0.162 5.162 15 N -0.190 5.190 16 C -0.001 4.001 17 N -0.155 5.155 18 C -0.089 4.089 19 C -0.170 4.170 20 C -0.144 4.144 21 C -0.042 4.042 22 H 0.079 0.921 23 C 0.157 3.843 24 O -0.309 6.309 25 C -0.064 4.064 26 C -0.053 4.053 27 O -0.313 6.313 28 N -0.178 5.178 29 C -0.073 4.073 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.024 0.976 34 H 0.029 0.971 35 H 0.075 0.925 36 H 0.140 0.860 37 H 0.065 0.935 38 H 0.136 0.864 39 H 0.079 0.921 40 H 0.121 0.879 41 H 0.111 0.889 42 H 0.119 0.881 43 H 0.112 0.888 44 H 0.124 0.876 45 H 0.149 0.851 46 H 0.083 0.917 47 H 0.109 0.891 48 H 0.131 0.869 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.795 -2.750 -29.003 29.915 hybrid contribution 0.653 -0.016 1.287 1.443 sum 7.448 -2.766 -27.716 28.832 Atomic orbital electron populations 1.21576 0.92736 1.01763 1.01571 1.19498 0.96910 0.97815 0.86127 0.88810 1.19393 0.95239 0.95712 0.92357 1.21280 1.34697 1.09071 0.90135 0.92546 1.25680 0.96680 0.99775 0.95774 1.70007 1.48568 1.41032 0.98621 0.85943 0.79667 0.80917 0.77782 1.19783 1.18911 1.20398 1.25120 0.96491 0.92035 0.94071 1.73861 1.21581 1.12631 1.08171 1.74380 1.15510 1.22541 1.06562 1.22712 1.01325 0.85469 0.90566 1.60096 1.11388 1.31970 1.12066 1.23221 0.83237 1.02089 1.00330 1.22793 0.99272 0.96992 0.97968 1.22682 0.89641 1.03303 0.98794 1.23060 0.97418 0.88829 0.94908 0.92067 1.23970 0.84804 0.84974 0.90566 1.89356 1.17060 1.66665 1.57803 1.24505 0.93689 0.90138 0.98053 1.24315 0.80633 0.96639 1.03684 1.88803 1.32764 1.33790 1.75893 1.46228 1.40105 1.13340 1.18084 1.22406 1.01275 0.77509 1.06158 0.91522 0.92251 0.93567 0.97610 0.97115 0.92454 0.85982 0.93522 0.86446 0.92112 0.87924 0.88917 0.88118 0.88777 0.87637 0.85146 0.91697 0.89064 0.86917 0.88091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.57 8.99 71.98 0.65 -3.93 16 2 C 0.02 0.71 2.70 -11.54 -0.03 0.67 16 3 H 0.09 3.43 6.94 -2.39 -0.02 3.41 16 4 C 0.01 0.56 3.50 29.85 0.10 0.67 16 5 C -0.51 -28.85 8.96 25.60 0.23 -28.62 16 6 H 0.06 3.33 7.30 -2.91 -0.02 3.31 16 7 C 0.02 1.09 5.47 84.66 0.46 1.55 16 8 N -0.94 -58.08 13.96 21.45 0.30 -57.78 16 9 Si 0.93 46.26 27.47 68.60 1.88 48.15 16 10 H -0.27 -13.36 7.11 99.48 0.71 -12.65 16 11 H -0.26 -12.91 6.54 99.48 0.65 -12.26 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 13 C 0.19 7.58 6.58 137.64 0.91 8.48 16 14 N -0.32 -14.41 12.18 -49.54 -0.60 -15.02 16 15 N -0.35 -14.05 10.33 -58.01 -0.60 -14.65 16 16 C 0.36 11.77 6.17 260.11 1.60 13.37 16 17 N -0.43 -10.48 4.79 -672.29 -3.22 -13.70 16 18 C 0.04 0.65 6.04 86.65 0.52 1.17 16 19 C -0.13 -1.80 6.94 31.78 0.22 -1.58 16 20 C -0.11 -1.57 6.40 31.98 0.20 -1.37 16 21 C 0.07 1.55 2.31 45.38 0.11 1.66 16 22 H 0.06 1.91 6.90 -2.39 -0.02 1.89 16 23 C 0.25 5.71 3.73 71.98 0.27 5.98 16 24 O -0.39 -10.79 10.13 -126.20 -1.28 -12.07 16 25 C 0.01 0.23 7.95 72.64 0.58 0.81 16 26 C 0.02 0.41 8.07 72.64 0.59 0.99 16 27 O -0.39 -8.35 11.11 -126.20 -1.40 -9.75 16 28 N -0.48 -15.41 3.16 -538.19 -1.70 -17.11 16 29 C 0.07 1.41 9.89 127.77 1.26 2.67 16 30 H 0.07 2.71 6.95 -2.39 -0.02 2.69 16 31 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.01 0.28 7.20 -2.38 -0.02 0.26 16 34 H 0.01 0.55 7.57 -2.39 -0.02 0.53 16 35 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 36 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.05 0.99 7.29 -2.39 -0.02 0.97 16 38 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.10 1.12 7.99 -2.39 -0.02 1.10 16 41 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.10 1.92 8.05 -2.39 -0.02 1.90 16 43 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.11 1.97 8.14 -2.39 -0.02 1.96 16 45 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.10 1.95 7.23 -2.39 -0.02 1.93 16 Total: -1.00 -78.58 387.02 1.93 -76.64 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.88 Total: 12.76 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: 7.67 Total: 2.53 kcal Atomic # 7 Polarization: -112.43 SS G_CDS: -5.82 Total: -118.25 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -2.68 Total: -21.83 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.88 Total: 48.15 kcal Total: -78.58 1.93 -76.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646689802.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.059 kcal (2) G-P(sol) polarization free energy of solvation -78.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds