Wall clock time and date at job start Tue Mar 31 2020 20:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47224 * 2 1 4 4 C 1.53002 * 109.47032 * 119.99604 * 2 1 3 5 5 C 1.50691 * 109.47210 * 294.99883 * 4 2 1 6 6 H 1.07999 * 120.00283 * 0.02562 * 5 4 2 7 7 C 1.37886 * 120.00103 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99723 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99910 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47167 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46658 * 119.99919 * 9 7 5 12 12 H 1.48497 * 109.46833 * 239.99419 * 9 7 5 13 13 C 1.50700 * 109.46989 * 239.99488 * 2 1 3 14 14 N 1.30295 * 126.34949 * 299.96184 * 13 2 1 15 15 N 1.28523 * 110.05294 * 179.76280 * 14 13 2 16 16 C 1.31221 * 109.86147 * 0.45387 * 15 14 13 17 17 N 1.38582 * 126.47165 * 179.82712 * 16 15 14 18 18 C 1.47840 * 110.99909 * 339.73406 * 17 16 15 19 19 C 1.54903 * 104.79470 * 146.36917 * 18 17 16 20 20 C 1.55140 * 101.65380 * 322.92856 * 19 18 17 21 21 C 1.47437 * 111.00056 * 100.58163 * 17 16 15 22 22 H 1.09004 * 109.89455 * 117.17386 * 21 17 16 23 23 C 1.53001 * 109.89180 * 356.14528 * 21 17 16 24 24 O 1.43753 * 109.62658 * 295.46679 * 23 21 17 25 25 C 1.44785 * 104.81294 * 215.80303 * 24 23 21 26 26 C 1.54913 * 101.72009 * 36.10935 * 25 24 23 27 27 O 1.43362 * 109.63300 * 176.10559 * 23 21 17 28 28 N 1.36449 * 107.05137 * 359.55893 * 16 15 14 29 29 C 1.46501 * 127.13444 * 180.24588 * 28 16 15 30 30 H 1.09004 * 109.47442 * 300.00394 * 1 2 3 31 31 H 1.09000 * 109.47193 * 60.00258 * 1 2 3 32 32 H 1.08994 * 109.47381 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47210 * 55.00086 * 4 2 1 34 34 H 1.09005 * 109.47087 * 174.99846 * 4 2 1 35 35 H 0.96998 * 120.00238 * 180.02562 * 8 7 5 36 36 H 1.08998 * 110.37362 * 265.19252 * 18 17 16 37 37 H 1.08999 * 110.37400 * 27.53820 * 18 17 16 38 38 H 1.09001 * 110.99660 * 81.01759 * 19 18 17 39 39 H 1.09006 * 110.99436 * 204.80308 * 19 18 17 40 40 H 1.09003 * 110.70690 * 277.27225 * 20 19 18 41 41 H 1.08999 * 110.70770 * 154.03537 * 20 19 18 42 42 H 1.08991 * 109.62771 * 55.70455 * 23 21 17 43 43 H 1.08996 * 110.98508 * 277.99708 * 25 24 23 44 44 H 1.09007 * 111.00755 * 154.22730 * 25 24 23 45 45 H 1.09002 * 110.69529 * 206.04175 * 26 25 24 46 46 H 1.09002 * 110.84452 * 82.90427 * 26 25 24 47 47 H 1.09005 * 109.47186 * 90.00132 * 29 28 16 48 48 H 1.09002 * 109.46841 * 210.00062 * 29 28 16 49 49 H 1.08995 * 109.47603 * 329.99999 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0572 2.4765 6 1 1.0800 0.9743 2.3757 7 6 1.9932 -0.4015 3.7283 8 7 2.6764 -1.5186 3.8512 9 14 1.4984 0.5630 5.2496 10 1 0.7412 1.7740 4.8433 11 1 0.6451 -0.2868 6.1185 12 1 2.7163 0.9685 5.9963 13 6 2.0323 -0.7105 -1.2304 14 7 1.7955 -1.9493 -1.5576 15 7 2.3724 -2.2289 -2.6715 16 6 3.0214 -1.1776 -3.1136 17 7 3.7644 -1.0989 -4.2808 18 6 4.1549 -2.4447 -4.7520 19 6 4.1517 -2.3390 -6.2974 20 6 2.9383 -1.4047 -6.5452 21 6 2.9998 -0.4307 -5.3497 22 1 3.5020 0.4907 -5.6446 23 6 1.5845 -0.1178 -4.8599 24 8 0.8827 -1.3444 -4.5961 25 6 -0.4854 -1.0800 -4.9895 26 6 -0.2868 -0.1648 -6.2235 27 8 0.8755 0.6119 -5.8699 28 7 2.8216 -0.1749 -2.2101 29 6 3.3447 1.1920 -2.2757 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6053 -1.7197 1.2953 34 1 3.1263 -0.7994 1.2057 35 1 2.9237 -1.8415 4.7318 36 1 5.1516 -2.6987 -4.3911 37 1 3.4296 -3.1879 -4.4209 38 1 5.0742 -1.8853 -6.6598 39 1 3.9932 -3.3155 -6.7553 40 1 2.0070 -1.9710 -6.5333 41 1 3.0517 -0.8671 -7.4866 42 1 1.6358 0.4756 -3.9472 43 1 -1.0249 -0.5580 -4.1993 44 1 -0.9977 -2.0018 -5.2657 45 1 -1.1527 0.4813 -6.3673 46 1 -0.0967 -0.7568 -7.1188 47 1 2.6355 1.8274 -2.8064 48 1 3.4898 1.5744 -1.2653 49 1 4.2980 1.1913 -2.8043 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646689805.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:45 Heat of formation + Delta-G solvation = 14.409226 kcal Electronic energy + Delta-G solvation = -31702.871891 eV Core-core repulsion = 27667.450171 eV Total energy + Delta-G solvation = -4035.421720 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.71395 -40.79904 -38.66894 -35.32473 -35.17039 -34.53979 -32.50491 -31.72887 -31.30576 -28.78992 -28.02922 -27.20653 -26.88828 -24.57662 -24.05850 -23.42367 -22.62113 -21.81230 -21.13987 -19.87563 -18.94673 -17.78192 -17.38901 -16.71446 -16.63111 -16.21291 -15.96389 -15.71757 -15.24601 -14.60127 -14.44799 -14.21471 -13.78263 -13.66837 -13.46922 -13.27040 -13.15092 -13.07957 -12.78474 -12.62106 -12.40380 -12.20322 -11.89348 -11.73678 -11.71119 -11.36942 -11.23439 -11.07895 -10.92575 -10.87075 -10.64448 -10.45411 -10.39404 -10.30054 -9.97185 -9.82472 -9.65293 -9.60511 -9.08427 -9.00311 -8.35467 -7.94858 -5.98776 -4.02384 2.18396 2.53947 3.15045 3.31279 3.38949 3.41410 3.45578 3.61676 3.85053 4.29879 4.34154 4.45112 4.46242 4.58350 4.65347 4.83852 4.88419 4.96020 5.03940 5.04591 5.14718 5.19994 5.26560 5.31956 5.36599 5.44052 5.47277 5.56190 5.57737 5.63033 5.64538 5.71558 5.80985 5.87901 6.05206 6.09994 6.16376 6.27342 6.37225 6.59214 6.72155 6.79397 6.85451 6.96102 7.08438 7.52270 7.65724 7.81531 8.01203 8.36927 9.03636 9.35792 9.61100 11.12296 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019360 B = 0.003281 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.945380 B = 8531.136020 C = 9151.287601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.002 4.002 3 H 0.070 0.930 4 C 0.039 3.961 5 C -0.520 4.520 6 H 0.058 0.942 7 C 0.059 3.941 8 N -0.890 5.890 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 C 0.213 3.787 14 N -0.282 5.282 15 N -0.289 5.289 16 C 0.320 3.680 17 N -0.438 5.438 18 C 0.053 3.947 19 C -0.126 4.126 20 C -0.127 4.127 21 C 0.066 3.934 22 H 0.107 0.893 23 C 0.212 3.788 24 O -0.344 6.344 25 C 0.015 3.985 26 C 0.022 3.978 27 O -0.382 6.382 28 N -0.484 5.484 29 C 0.076 3.924 30 H 0.073 0.927 31 H 0.028 0.972 32 H 0.060 0.940 33 H 0.032 0.968 34 H 0.014 0.986 35 H 0.260 0.740 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.110 0.890 45 H 0.099 0.901 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.095 0.905 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.296 4.351 -24.242 24.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.023 4.023 3 H 0.089 0.911 4 C 0.001 3.999 5 C -0.558 4.558 6 H 0.077 0.923 7 C -0.143 4.143 8 N -0.529 5.529 9 Si 0.719 3.281 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.211 1.211 13 C -0.054 4.054 14 N -0.120 5.120 15 N -0.133 5.133 16 C -0.036 4.036 17 N -0.164 5.164 18 C -0.074 4.074 19 C -0.164 4.164 20 C -0.165 4.165 21 C -0.043 4.043 22 H 0.125 0.875 23 C 0.115 3.885 24 O -0.263 6.263 25 C -0.062 4.062 26 C -0.054 4.054 27 O -0.302 6.302 28 N -0.179 5.179 29 C -0.068 4.068 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.032 0.968 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.128 0.872 45 H 0.117 0.883 46 H 0.094 0.906 47 H 0.089 0.911 48 H 0.114 0.886 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.151 3.124 -23.942 24.173 hybrid contribution -0.315 1.537 0.718 1.725 sum -1.466 4.661 -23.224 23.732 Atomic orbital electron populations 1.21648 0.93754 1.02376 1.00351 1.19962 0.96103 0.97550 0.88664 0.91134 1.19101 0.96172 0.96259 0.88406 1.21184 1.35420 1.08481 0.90754 0.92332 1.25005 0.95169 0.95017 0.99070 1.69993 1.38468 1.20966 1.23425 0.86560 0.78256 0.80051 0.83262 1.19723 1.20987 1.21109 1.25558 0.94700 0.91961 0.93164 1.74020 1.19997 1.10855 1.07159 1.74437 1.09466 1.22513 1.06863 1.22169 1.00598 0.87176 0.93646 1.60529 1.34934 1.21388 0.99594 1.23075 1.02271 0.87985 0.94049 1.22699 0.98299 1.00154 0.95256 1.22699 0.99706 0.97034 0.97080 1.23036 0.90726 0.99326 0.91167 0.87484 1.24623 0.90758 0.82812 0.90285 1.89514 1.19313 1.32211 1.85288 1.24381 0.85468 1.00895 0.95445 1.24214 0.88759 0.94475 0.97991 1.88853 1.38495 1.44771 1.58070 1.46225 1.41068 1.12041 1.18611 1.22012 1.00202 0.79567 1.04983 0.90763 0.95300 0.92094 0.94979 0.96795 0.92991 0.89564 0.89684 0.90564 0.90095 0.90288 0.90400 0.89907 0.90784 0.87241 0.88298 0.90626 0.91112 0.88625 0.89071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 8.98 37.16 0.33 -2.01 16 2 C 0.00 -0.03 2.70 -91.77 -0.25 -0.28 16 3 H 0.07 1.34 6.94 -51.93 -0.36 0.98 16 4 C 0.04 1.00 4.43 -27.89 -0.12 0.88 16 5 C -0.52 -14.19 8.41 -34.44 -0.29 -14.48 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 9 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 13 C 0.21 4.29 6.58 -154.01 -1.01 3.28 16 14 N -0.28 -6.25 12.18 32.99 0.40 -5.85 16 15 N -0.29 -5.83 9.41 30.31 0.29 -5.54 16 16 C 0.32 5.45 4.47 -318.87 -1.43 4.03 16 17 N -0.44 -6.01 5.20 -163.83 -0.85 -6.86 16 18 C 0.05 0.65 6.62 -2.30 -0.02 0.64 16 19 C -0.13 -1.12 7.08 -24.59 -0.17 -1.30 16 20 C -0.13 -1.22 6.19 -24.91 -0.15 -1.37 16 21 C 0.07 0.76 3.53 -66.73 -0.24 0.53 16 22 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 23 C 0.21 2.74 2.91 37.16 0.11 2.85 16 24 O -0.34 -4.93 7.65 -59.04 -0.45 -5.38 16 25 C 0.01 0.16 7.95 38.17 0.30 0.46 16 26 C 0.02 0.19 8.07 38.17 0.31 0.50 16 27 O -0.38 -4.44 11.03 -59.04 -0.65 -5.09 16 28 N -0.48 -8.19 2.25 -121.46 -0.27 -8.47 16 29 C 0.08 0.94 10.33 59.85 0.62 1.56 16 30 H 0.07 1.42 6.95 -51.93 -0.36 1.06 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.08 1.26 6.79 -51.93 -0.35 0.90 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.84 6.97 -51.93 -0.36 0.48 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 1.22 4.73 -51.93 -0.25 0.98 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.11 0.96 8.14 -51.92 -0.42 0.54 16 45 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.74 7.29 -51.93 -0.38 0.36 16 48 H 0.10 1.17 7.23 -51.93 -0.38 0.80 16 49 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 381.83 15.07 5.75 5.75 Total: -1.00 -34.20 381.83 -10.04 -44.24 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.86 Total: 0.18 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -2.11 Total: -3.15 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.30 Total: -52.84 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -1.10 Total: -10.47 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.20 -10.04 -44.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646689805.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.649 kcal (2) G-P(sol) polarization free energy of solvation -34.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds