Wall clock time and date at job start Tue Mar 31 2020 20:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47224 * 2 1 4 4 C 1.53002 * 109.47032 * 119.99604 * 2 1 3 5 5 C 1.50691 * 109.47210 * 294.99883 * 4 2 1 6 6 H 1.07999 * 120.00283 * 0.02562 * 5 4 2 7 7 C 1.37886 * 120.00103 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99723 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99910 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47167 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46658 * 119.99919 * 9 7 5 12 12 H 1.48497 * 109.46833 * 239.99419 * 9 7 5 13 13 C 1.50700 * 109.46989 * 239.99488 * 2 1 3 14 14 N 1.30295 * 126.34949 * 299.96184 * 13 2 1 15 15 N 1.28523 * 110.05294 * 179.76280 * 14 13 2 16 16 C 1.31221 * 109.86147 * 0.45387 * 15 14 13 17 17 N 1.38582 * 126.47165 * 179.82712 * 16 15 14 18 18 C 1.47840 * 110.99909 * 339.73406 * 17 16 15 19 19 C 1.54903 * 104.79470 * 146.36917 * 18 17 16 20 20 C 1.55140 * 101.65380 * 322.92856 * 19 18 17 21 21 C 1.47437 * 111.00056 * 100.58163 * 17 16 15 22 22 H 1.09004 * 109.89455 * 117.17386 * 21 17 16 23 23 C 1.53001 * 109.89180 * 356.14528 * 21 17 16 24 24 O 1.43753 * 109.62658 * 295.46679 * 23 21 17 25 25 C 1.44785 * 104.81294 * 215.80303 * 24 23 21 26 26 C 1.54913 * 101.72009 * 36.10935 * 25 24 23 27 27 O 1.43362 * 109.63300 * 176.10559 * 23 21 17 28 28 N 1.36449 * 107.05137 * 359.55893 * 16 15 14 29 29 C 1.46501 * 127.13444 * 180.24588 * 28 16 15 30 30 H 1.09004 * 109.47442 * 300.00394 * 1 2 3 31 31 H 1.09000 * 109.47193 * 60.00258 * 1 2 3 32 32 H 1.08994 * 109.47381 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47210 * 55.00086 * 4 2 1 34 34 H 1.09005 * 109.47087 * 174.99846 * 4 2 1 35 35 H 0.96998 * 120.00238 * 180.02562 * 8 7 5 36 36 H 1.08998 * 110.37362 * 265.19252 * 18 17 16 37 37 H 1.08999 * 110.37400 * 27.53820 * 18 17 16 38 38 H 1.09001 * 110.99660 * 81.01759 * 19 18 17 39 39 H 1.09006 * 110.99436 * 204.80308 * 19 18 17 40 40 H 1.09003 * 110.70690 * 277.27225 * 20 19 18 41 41 H 1.08999 * 110.70770 * 154.03537 * 20 19 18 42 42 H 1.08991 * 109.62771 * 55.70455 * 23 21 17 43 43 H 1.08996 * 110.98508 * 277.99708 * 25 24 23 44 44 H 1.09007 * 111.00755 * 154.22730 * 25 24 23 45 45 H 1.09002 * 110.69529 * 206.04175 * 26 25 24 46 46 H 1.09002 * 110.84452 * 82.90427 * 26 25 24 47 47 H 1.09005 * 109.47186 * 90.00132 * 29 28 16 48 48 H 1.09002 * 109.46841 * 210.00062 * 29 28 16 49 49 H 1.08995 * 109.47603 * 329.99999 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0572 2.4765 6 1 1.0800 0.9743 2.3757 7 6 1.9932 -0.4015 3.7283 8 7 2.6764 -1.5186 3.8512 9 14 1.4984 0.5630 5.2496 10 1 0.7412 1.7740 4.8433 11 1 0.6451 -0.2868 6.1185 12 1 2.7163 0.9685 5.9963 13 6 2.0323 -0.7105 -1.2304 14 7 1.7955 -1.9493 -1.5576 15 7 2.3724 -2.2289 -2.6715 16 6 3.0214 -1.1776 -3.1136 17 7 3.7644 -1.0989 -4.2808 18 6 4.1549 -2.4447 -4.7520 19 6 4.1517 -2.3390 -6.2974 20 6 2.9383 -1.4047 -6.5452 21 6 2.9998 -0.4307 -5.3497 22 1 3.5020 0.4907 -5.6446 23 6 1.5845 -0.1178 -4.8599 24 8 0.8827 -1.3444 -4.5961 25 6 -0.4854 -1.0800 -4.9895 26 6 -0.2868 -0.1648 -6.2235 27 8 0.8755 0.6119 -5.8699 28 7 2.8216 -0.1749 -2.2101 29 6 3.3447 1.1920 -2.2757 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6053 -1.7197 1.2953 34 1 3.1263 -0.7994 1.2057 35 1 2.9237 -1.8415 4.7318 36 1 5.1516 -2.6987 -4.3911 37 1 3.4296 -3.1879 -4.4209 38 1 5.0742 -1.8853 -6.6598 39 1 3.9932 -3.3155 -6.7553 40 1 2.0070 -1.9710 -6.5333 41 1 3.0517 -0.8671 -7.4866 42 1 1.6358 0.4756 -3.9472 43 1 -1.0249 -0.5580 -4.1993 44 1 -0.9977 -2.0018 -5.2657 45 1 -1.1527 0.4813 -6.3673 46 1 -0.0967 -0.7568 -7.1188 47 1 2.6355 1.8274 -2.8064 48 1 3.4898 1.5744 -1.2653 49 1 4.2980 1.1913 -2.8043 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646689805.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:45 Heat of formation + Delta-G solvation = -7.295438 kcal Electronic energy + Delta-G solvation = -31703.813076 eV Core-core repulsion = 27667.450171 eV Total energy + Delta-G solvation = -4036.362904 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.08382 -41.75084 -39.63928 -37.06639 -36.09901 -35.88965 -34.35857 -32.98692 -32.17511 -29.72785 -29.51445 -28.71219 -28.35452 -25.90023 -25.49655 -24.22184 -23.96656 -23.26854 -22.15942 -21.03989 -20.44253 -18.75189 -18.60785 -18.43003 -17.58940 -17.40051 -17.16465 -16.86448 -16.48818 -16.18543 -15.70906 -15.43168 -15.03017 -14.79540 -14.61950 -14.40322 -14.25874 -14.23100 -14.00989 -13.80316 -13.70984 -13.47944 -13.20241 -12.96563 -12.79485 -12.67362 -12.65433 -12.48935 -12.37472 -12.23957 -12.14979 -11.97151 -11.68752 -11.49389 -11.44520 -11.22035 -11.15193 -11.01941 -10.76470 -10.55701 -10.34114 -9.32831 -8.16203 -6.28177 0.82385 1.29420 1.43525 1.44337 1.57199 1.95846 2.27916 2.43837 2.71583 2.79828 3.17840 3.40624 3.52474 3.54806 3.61496 3.78419 3.79088 3.90421 4.01588 4.05880 4.09967 4.21791 4.27492 4.34690 4.35978 4.42564 4.50167 4.52124 4.57215 4.60708 4.67373 4.73964 4.83748 4.86403 4.92014 4.96859 5.04319 5.08735 5.10168 5.17272 5.31704 5.35282 5.46052 5.50635 5.61666 5.70632 5.84025 5.91899 6.19886 6.25975 6.88024 7.41136 7.89410 8.96559 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019360 B = 0.003281 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.945380 B = 8531.136020 C = 9151.287601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.009 3.991 3 H 0.092 0.908 4 C 0.052 3.948 5 C -0.528 4.528 6 H 0.077 0.923 7 C -0.002 4.002 8 N -0.937 5.937 9 Si 0.967 3.033 10 H -0.252 1.252 11 H -0.284 1.284 12 H -0.282 1.282 13 C 0.197 3.803 14 N -0.323 5.323 15 N -0.323 5.323 16 C 0.342 3.658 17 N -0.437 5.437 18 C 0.045 3.955 19 C -0.112 4.112 20 C -0.120 4.120 21 C 0.064 3.936 22 H 0.126 0.874 23 C 0.214 3.786 24 O -0.372 6.372 25 C 0.006 3.994 26 C 0.027 3.973 27 O -0.388 6.388 28 N -0.481 5.481 29 C 0.068 3.932 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.039 0.961 33 H -0.011 1.011 34 H -0.023 1.023 35 H 0.261 0.739 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.066 0.934 41 H 0.103 0.897 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.094 0.906 47 H 0.095 0.905 48 H 0.097 0.903 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.465 6.947 -26.504 27.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.012 4.012 3 H 0.111 0.889 4 C 0.014 3.986 5 C -0.566 4.566 6 H 0.095 0.905 7 C -0.200 4.200 8 N -0.578 5.578 9 Si 0.792 3.208 10 H -0.176 1.176 11 H -0.210 1.210 12 H -0.208 1.208 13 C -0.071 4.071 14 N -0.162 5.162 15 N -0.166 5.166 16 C -0.015 4.015 17 N -0.163 5.163 18 C -0.081 4.081 19 C -0.149 4.149 20 C -0.159 4.159 21 C -0.044 4.044 22 H 0.144 0.856 23 C 0.117 3.883 24 O -0.292 6.292 25 C -0.070 4.070 26 C -0.049 4.049 27 O -0.308 6.308 28 N -0.176 5.176 29 C -0.074 4.074 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.007 0.993 34 H -0.005 1.005 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.074 0.926 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.085 0.915 41 H 0.122 0.878 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.112 0.888 47 H 0.113 0.887 48 H 0.115 0.885 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.329 5.752 -26.236 26.892 hybrid contribution -0.232 0.695 1.306 1.498 sum -1.561 6.447 -24.929 25.797 Atomic orbital electron populations 1.21534 0.92456 1.01440 1.01692 1.19711 0.97118 0.97735 0.86607 0.88942 1.18831 0.93548 0.94811 0.91435 1.21609 1.34902 1.08881 0.91171 0.90532 1.26027 0.95047 0.95966 1.02949 1.70165 1.40164 1.23150 1.24295 0.85364 0.77982 0.78946 0.78540 1.17576 1.20958 1.20753 1.25235 0.96097 0.91861 0.93913 1.73908 1.21499 1.12310 1.08452 1.74356 1.11169 1.24278 1.06830 1.22487 0.98669 0.86225 0.94073 1.60739 1.34327 1.22102 0.99170 1.23165 1.01351 0.86710 0.96913 1.22689 0.99013 1.01114 0.92126 1.22696 0.99374 0.96643 0.97156 1.23205 0.89920 1.00355 0.90905 0.85602 1.24487 0.91565 0.82264 0.89987 1.89506 1.20960 1.32985 1.85777 1.24564 0.84188 1.02086 0.96137 1.24392 0.88640 0.94457 0.97394 1.88829 1.39280 1.45114 1.57566 1.46352 1.40196 1.13465 1.17550 1.22360 1.01648 0.77574 1.05804 0.90795 0.92346 0.94204 0.99297 1.00471 0.92986 0.89356 0.92576 0.88468 0.88643 0.91500 0.87812 0.92045 0.91881 0.85892 0.85974 0.88781 0.88669 0.88478 0.87227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.32 8.98 71.98 0.65 -3.68 16 2 C 0.01 0.39 2.70 -11.54 -0.03 0.36 16 3 H 0.09 3.45 6.94 -2.39 -0.02 3.43 16 4 C 0.05 2.83 4.43 29.85 0.13 2.96 16 5 C -0.53 -29.21 8.41 25.60 0.22 -29.00 16 6 H 0.08 3.88 7.06 -2.91 -0.02 3.86 16 7 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 8 N -0.94 -58.64 13.29 21.45 0.28 -58.35 16 9 Si 0.97 43.85 29.54 68.60 2.03 45.88 16 10 H -0.25 -10.53 7.11 99.48 0.71 -9.82 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 13 C 0.20 8.21 6.58 137.64 0.91 9.12 16 14 N -0.32 -15.11 12.18 -49.54 -0.60 -15.71 16 15 N -0.32 -13.59 9.41 -58.00 -0.55 -14.14 16 16 C 0.34 11.77 4.47 260.11 1.16 12.93 16 17 N -0.44 -11.50 5.20 -672.23 -3.50 -15.00 16 18 C 0.05 1.09 6.62 86.77 0.57 1.66 16 19 C -0.11 -1.69 7.08 31.98 0.23 -1.46 16 20 C -0.12 -1.97 6.19 31.78 0.20 -1.77 16 21 C 0.06 1.33 3.53 45.26 0.16 1.49 16 22 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 23 C 0.21 5.24 2.91 71.98 0.21 5.45 16 24 O -0.37 -10.59 7.65 -126.22 -0.97 -11.56 16 25 C 0.01 0.13 7.95 72.64 0.58 0.71 16 26 C 0.03 0.40 8.07 72.64 0.59 0.99 16 27 O -0.39 -8.07 11.03 -126.22 -1.39 -9.46 16 28 N -0.48 -16.28 2.25 -538.18 -1.21 -17.49 16 29 C 0.07 1.57 10.33 127.77 1.32 2.89 16 30 H 0.07 2.79 6.95 -2.38 -0.02 2.77 16 31 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 33 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 34 H -0.02 -1.41 8.14 -2.38 -0.02 -1.43 16 35 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 36 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.06 1.70 6.79 -2.39 -0.02 1.69 16 38 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.07 1.29 6.97 -2.39 -0.02 1.27 16 41 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.06 1.75 4.73 -2.39 -0.01 1.74 16 43 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.12 2.08 8.14 -2.38 -0.02 2.06 16 45 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.09 1.77 7.29 -2.38 -0.02 1.75 16 48 H 0.10 2.24 7.23 -2.39 -0.02 2.23 16 49 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -78.75 381.83 2.39 -76.36 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.95 Total: 16.49 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 7.34 Total: 2.98 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -5.57 Total: -120.69 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -2.36 Total: -21.02 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -78.75 2.39 -76.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646689805.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.069 kcal (2) G-P(sol) polarization free energy of solvation -78.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds