Wall clock time and date at job start Tue Mar 31 2020 20:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34225 * 116.99732 * 2 1 4 4 O 1.20829 * 120.00239 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99886 * 179.97438 * 3 2 1 6 6 C 1.53124 * 109.52075 * 299.68322 * 5 3 2 7 7 C 1.53035 * 109.27214 * 182.43835 * 6 5 3 8 8 N 1.46845 * 109.52549 * 59.18606 * 7 6 5 9 9 C 1.38584 * 111.00155 * 174.15743 * 8 7 6 10 10 N 1.31216 * 126.47079 * 36.07331 * 9 8 7 11 11 N 1.28532 * 109.85821 * 179.97438 * 10 9 8 12 12 C 1.30297 * 110.05425 * 0.02562 * 11 10 9 13 13 C 1.50700 * 126.34983 * 179.97438 * 12 11 10 14 14 H 1.08996 * 109.47204 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.46579 * 60.02479 * 13 12 11 16 16 C 1.52997 * 109.46938 * 300.02709 * 13 12 11 17 17 C 1.50700 * 109.46706 * 184.99627 * 16 13 12 18 18 H 1.07997 * 120.00333 * 359.97438 * 17 16 13 19 19 C 1.37880 * 119.99952 * 180.02562 * 17 16 13 20 20 N 1.31510 * 120.00219 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 119.99926 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.46909 * 90.00446 * 21 19 17 23 23 H 1.48497 * 109.46877 * 210.00635 * 21 19 17 24 24 H 1.48507 * 109.46929 * 330.00191 * 21 19 17 25 25 N 1.36450 * 126.47212 * 215.75817 * 9 8 7 26 26 C 1.46500 * 127.13658 * 0.04070 * 25 9 8 27 27 C 1.46855 * 111.19350 * 298.25321 * 8 7 6 28 28 C 1.53030 * 109.52455 * 61.74260 * 27 8 7 29 29 H 1.08992 * 109.46898 * 59.99866 * 1 2 3 30 30 H 1.09000 * 109.47151 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46898 * 299.99686 * 1 2 3 32 32 H 1.08997 * 109.56869 * 59.84346 * 5 3 2 33 33 H 1.09000 * 109.49785 * 62.50269 * 6 5 3 34 34 H 1.08999 * 109.50542 * 302.38144 * 6 5 3 35 35 H 1.08997 * 109.46923 * 299.16119 * 7 6 5 36 36 H 1.09008 * 109.45764 * 179.19666 * 7 6 5 37 37 H 1.09004 * 109.46506 * 179.97438 * 15 13 12 38 38 H 1.08994 * 109.47584 * 300.00097 * 15 13 12 39 39 H 1.09005 * 109.47296 * 60.00676 * 15 13 12 40 40 H 1.08996 * 109.47344 * 304.99465 * 16 13 12 41 41 H 1.08998 * 109.47176 * 65.00102 * 16 13 12 42 42 H 0.96996 * 120.00215 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.47340 * 95.26337 * 26 25 9 44 44 H 1.08998 * 109.47036 * 215.25916 * 26 25 9 45 45 H 1.09000 * 109.47198 * 335.26205 * 26 25 9 46 46 H 1.09001 * 109.45660 * 181.76125 * 27 8 7 47 47 H 1.08999 * 109.45816 * 301.72446 * 27 8 7 48 48 H 1.09004 * 109.50177 * 60.76044 * 28 27 8 49 49 H 1.08996 * 109.50469 * 180.87794 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.1142 0.5882 1.2548 7 6 5.6383 0.7247 1.2804 8 7 6.0038 2.1469 1.2801 9 6 7.3715 2.3083 1.4347 10 7 8.3089 1.5339 0.9415 11 7 9.4661 1.9789 1.2804 12 6 9.3366 3.0545 2.0044 13 6 10.4552 3.8731 2.5957 14 1 10.0368 4.7126 3.1509 15 6 11.3504 4.3999 1.4723 16 6 11.2828 2.9990 3.5400 17 6 12.3247 3.8458 4.2244 18 1 12.3903 4.9017 4.0073 19 6 13.1950 3.2723 5.1271 20 7 14.1039 4.0113 5.7248 21 14 13.0821 1.4457 5.5021 22 1 13.9521 0.6930 4.5632 23 1 13.5281 1.1984 6.8968 24 1 11.6762 0.9941 5.3446 25 7 7.9978 3.3059 2.1234 26 6 7.3667 4.4141 2.8444 27 6 5.5290 2.8169 0.0626 28 6 4.0018 2.7429 0.0005 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.9583 0.7786 -0.8872 33 1 3.8436 -0.4675 1.2392 34 1 3.6916 1.0599 2.1419 35 1 6.0612 0.2408 0.4000 36 1 6.0304 0.2492 2.1795 37 1 12.1592 4.9925 1.9000 38 1 11.7688 3.5605 0.9171 39 1 10.7607 5.0228 0.7996 40 1 10.6286 2.5523 4.2886 41 1 11.7732 2.2106 2.9690 42 1 14.7159 3.6079 6.3601 43 1 7.2669 4.1524 3.8978 44 1 7.9835 5.3077 2.7490 45 1 6.3802 4.6069 2.4228 46 1 5.8419 3.8609 0.0771 47 1 5.9525 2.3232 -0.8121 48 1 3.5774 3.2484 0.8679 49 1 3.6508 3.2265 -0.9111 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647688821.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:27 Heat of formation + Delta-G solvation = -9.797066 kcal Electronic energy + Delta-G solvation = -29478.421497 eV Core-core repulsion = 25441.950114 eV Total energy + Delta-G solvation = -4036.471383 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.75979 -41.11358 -39.11579 -36.92522 -35.56127 -34.78757 -33.88219 -32.16970 -31.39513 -29.16217 -28.23752 -27.50719 -27.37051 -25.57953 -24.12915 -23.56656 -22.28235 -21.55454 -20.90145 -20.11608 -19.09295 -18.03115 -17.49823 -17.10475 -16.88884 -16.72466 -16.28367 -15.97462 -15.10117 -14.67550 -14.56859 -14.24792 -14.13773 -13.97777 -13.79785 -13.47782 -13.26714 -13.22774 -12.88733 -12.74817 -12.59959 -12.56357 -12.01898 -11.95364 -11.69034 -11.46679 -11.31225 -11.22824 -11.19029 -11.11691 -11.03517 -10.84459 -10.69393 -10.46464 -10.08719 -10.02746 -9.85569 -9.80884 -9.21494 -9.14541 -8.55086 -8.36914 -6.06766 -4.05412 1.76620 1.94991 2.25631 2.35207 3.13324 3.34057 3.40918 3.47282 3.56878 4.03936 4.23586 4.31278 4.45755 4.61416 4.66419 4.70967 4.74639 4.75715 4.82168 4.92076 4.94865 5.06875 5.15419 5.17529 5.22354 5.26728 5.29943 5.35091 5.41445 5.48189 5.50819 5.63711 5.69204 5.86735 5.91525 5.95774 5.98015 6.13095 6.18707 6.49170 6.60670 6.67837 6.72844 6.97845 7.18724 7.29543 7.31023 7.36976 7.73462 8.47121 8.95491 9.04519 9.55673 11.05751 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.024822 B = 0.002256 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.762505 B =12410.636733 C =12873.879484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.468 3.532 4 O -0.505 6.505 5 C -0.083 4.083 6 C -0.107 4.107 7 C 0.073 3.927 8 N -0.459 5.459 9 C 0.322 3.678 10 N -0.314 5.314 11 N -0.288 5.288 12 C 0.214 3.786 13 C 0.007 3.993 14 H 0.079 0.921 15 C -0.127 4.127 16 C 0.002 3.998 17 C -0.519 4.519 18 H 0.077 0.923 19 C 0.071 3.929 20 N -0.901 5.901 21 Si 0.876 3.124 22 H -0.274 1.274 23 H -0.288 1.288 24 H -0.266 1.266 25 N -0.473 5.473 26 C 0.080 3.920 27 C 0.063 3.937 28 C -0.098 4.098 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.033 0.967 40 H 0.014 0.986 41 H 0.027 0.973 42 H 0.264 0.736 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.053 0.947 48 H 0.085 0.915 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.840 -4.109 -11.580 29.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.310 3.690 4 O -0.393 6.393 5 C -0.102 4.102 6 C -0.145 4.145 7 C -0.054 4.054 8 N -0.185 5.185 9 C -0.034 4.034 10 N -0.158 5.158 11 N -0.127 5.127 12 C -0.053 4.053 13 C -0.014 4.014 14 H 0.098 0.902 15 C -0.186 4.186 16 C -0.037 4.037 17 C -0.557 4.557 18 H 0.095 0.905 19 C -0.131 4.131 20 N -0.539 5.539 21 Si 0.703 3.297 22 H -0.200 1.200 23 H -0.214 1.214 24 H -0.191 1.191 25 N -0.166 5.166 26 C -0.063 4.063 27 C -0.064 4.064 28 C -0.136 4.136 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.130 0.870 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.052 0.948 40 H 0.032 0.968 41 H 0.045 0.955 42 H 0.073 0.927 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.100 0.900 47 H 0.071 0.929 48 H 0.103 0.897 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -26.547 -4.724 -11.797 29.431 hybrid contribution -0.624 -0.177 0.473 0.803 sum -27.170 -4.901 -11.324 29.841 Atomic orbital electron populations 1.23286 0.76238 1.03812 1.02587 1.86518 1.23497 1.33448 1.83960 1.23762 0.91901 0.81318 0.71978 1.90677 1.67165 1.36371 1.45052 1.21213 0.86990 0.99710 1.02310 1.21650 0.94918 1.01544 0.96358 1.22031 0.94467 0.85308 1.03610 1.58559 1.05448 1.16072 1.38421 1.22142 0.90981 0.91073 0.99254 1.74531 0.95185 1.24768 1.21357 1.74027 1.15563 1.08738 1.14345 1.25662 0.83182 0.96884 0.99591 1.19783 0.89296 0.95847 0.96479 0.90243 1.21696 0.99327 1.01040 0.96492 1.19584 0.94918 0.95564 0.93599 1.21014 1.14358 0.96774 1.23517 0.90542 1.24946 0.94886 0.97779 0.95473 1.69894 1.19536 1.35895 1.28618 0.86837 0.79123 0.86239 0.77507 1.20009 1.21446 1.19114 1.46227 1.07217 1.22825 1.40292 1.22003 0.99036 0.87781 0.97450 1.22199 0.94746 0.99662 0.89791 1.21525 0.94086 0.93573 1.04445 0.91896 0.87992 0.91819 0.87047 0.89207 0.90225 0.91998 0.89418 0.90102 0.92092 0.94758 0.96787 0.95469 0.92671 0.90004 0.89248 0.89214 0.89952 0.92873 0.89672 0.89862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 101.05 1.07 1.25 16 2 O -0.36 -2.80 10.50 -39.25 -0.41 -3.21 16 3 C 0.47 4.08 7.26 36.01 0.26 4.34 16 4 O -0.51 -5.70 15.73 -18.75 -0.29 -6.00 16 5 C -0.08 -0.60 2.70 -91.64 -0.25 -0.85 16 6 C -0.11 -0.78 5.31 -26.65 -0.14 -0.92 16 7 C 0.07 0.72 5.09 -3.84 -0.02 0.70 16 8 N -0.46 -5.20 4.64 -174.55 -0.81 -6.01 16 9 C 0.32 4.90 6.71 -318.87 -2.14 2.76 16 10 N -0.31 -5.79 11.69 30.31 0.35 -5.44 16 11 N -0.29 -5.91 12.18 32.99 0.40 -5.51 16 12 C 0.21 3.99 6.58 -154.01 -1.01 2.98 16 13 C 0.01 0.14 2.71 -91.77 -0.25 -0.11 16 14 H 0.08 1.42 7.08 -51.93 -0.37 1.05 16 15 C -0.13 -2.32 8.98 37.16 0.33 -1.99 16 16 C 0.00 0.04 3.50 -27.88 -0.10 -0.06 16 17 C -0.52 -14.10 8.96 -34.44 -0.31 -14.41 16 18 H 0.08 2.17 7.30 -52.49 -0.38 1.79 16 19 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 20 N -0.90 -27.11 13.96 55.43 0.77 -26.33 16 21 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 22 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.27 -6.60 6.54 56.52 0.37 -6.23 16 25 N -0.47 -7.25 3.21 -121.46 -0.39 -7.64 16 26 C 0.08 0.87 10.81 59.85 0.65 1.52 16 27 C 0.06 0.58 5.40 -3.83 -0.02 0.56 16 28 C -0.10 -0.75 4.68 -26.65 -0.12 -0.87 16 29 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 30 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.35 8.13 -51.93 -0.42 -0.08 16 32 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.64 8.06 -51.93 -0.42 0.23 16 36 H 0.09 0.97 8.10 -51.92 -0.42 0.55 16 37 H 0.08 1.55 6.95 -51.93 -0.36 1.19 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 41 H 0.03 0.68 7.57 -51.93 -0.39 0.28 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.09 0.87 7.48 -51.93 -0.39 0.48 16 45 H 0.09 0.78 8.11 -51.93 -0.42 0.35 16 46 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 47 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.08 0.72 8.04 -51.93 -0.42 0.30 16 49 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 396.68 15.07 5.98 5.98 Total: -1.00 -34.58 396.68 -9.40 -43.99 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -8.18 Total: -3.95 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -2.15 Total: -3.17 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: 0.33 Total: -50.93 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -0.71 Total: -9.21 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.58 -9.40 -43.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647688821.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.188 kcal (2) G-P(sol) polarization free energy of solvation -34.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds