Wall clock time and date at job start Tue Mar 31 2020 20:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34225 * 116.99732 * 2 1 4 4 O 1.20829 * 120.00239 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99886 * 179.97438 * 3 2 1 6 6 C 1.53124 * 109.52075 * 299.68322 * 5 3 2 7 7 C 1.53035 * 109.27214 * 182.43835 * 6 5 3 8 8 N 1.46845 * 109.52549 * 59.18606 * 7 6 5 9 9 C 1.38584 * 111.00155 * 174.15743 * 8 7 6 10 10 N 1.31216 * 126.47079 * 36.07331 * 9 8 7 11 11 N 1.28532 * 109.85821 * 179.97438 * 10 9 8 12 12 C 1.30297 * 110.05425 * 0.02562 * 11 10 9 13 13 C 1.50700 * 126.34983 * 179.97438 * 12 11 10 14 14 H 1.08996 * 109.47204 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.46579 * 60.02479 * 13 12 11 16 16 C 1.52997 * 109.46938 * 300.02709 * 13 12 11 17 17 C 1.50700 * 109.46706 * 184.99627 * 16 13 12 18 18 H 1.07997 * 120.00333 * 359.97438 * 17 16 13 19 19 C 1.37880 * 119.99952 * 180.02562 * 17 16 13 20 20 N 1.31510 * 120.00219 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 119.99926 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.46909 * 90.00446 * 21 19 17 23 23 H 1.48497 * 109.46877 * 210.00635 * 21 19 17 24 24 H 1.48507 * 109.46929 * 330.00191 * 21 19 17 25 25 N 1.36450 * 126.47212 * 215.75817 * 9 8 7 26 26 C 1.46500 * 127.13658 * 0.04070 * 25 9 8 27 27 C 1.46855 * 111.19350 * 298.25321 * 8 7 6 28 28 C 1.53030 * 109.52455 * 61.74260 * 27 8 7 29 29 H 1.08992 * 109.46898 * 59.99866 * 1 2 3 30 30 H 1.09000 * 109.47151 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46898 * 299.99686 * 1 2 3 32 32 H 1.08997 * 109.56869 * 59.84346 * 5 3 2 33 33 H 1.09000 * 109.49785 * 62.50269 * 6 5 3 34 34 H 1.08999 * 109.50542 * 302.38144 * 6 5 3 35 35 H 1.08997 * 109.46923 * 299.16119 * 7 6 5 36 36 H 1.09008 * 109.45764 * 179.19666 * 7 6 5 37 37 H 1.09004 * 109.46506 * 179.97438 * 15 13 12 38 38 H 1.08994 * 109.47584 * 300.00097 * 15 13 12 39 39 H 1.09005 * 109.47296 * 60.00676 * 15 13 12 40 40 H 1.08996 * 109.47344 * 304.99465 * 16 13 12 41 41 H 1.08998 * 109.47176 * 65.00102 * 16 13 12 42 42 H 0.96996 * 120.00215 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.47340 * 95.26337 * 26 25 9 44 44 H 1.08998 * 109.47036 * 215.25916 * 26 25 9 45 45 H 1.09000 * 109.47198 * 335.26205 * 26 25 9 46 46 H 1.09001 * 109.45660 * 181.76125 * 27 8 7 47 47 H 1.08999 * 109.45816 * 301.72446 * 27 8 7 48 48 H 1.09004 * 109.50177 * 60.76044 * 28 27 8 49 49 H 1.08996 * 109.50469 * 180.87794 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.1142 0.5882 1.2548 7 6 5.6383 0.7247 1.2804 8 7 6.0038 2.1469 1.2801 9 6 7.3715 2.3083 1.4347 10 7 8.3089 1.5339 0.9415 11 7 9.4661 1.9789 1.2804 12 6 9.3366 3.0545 2.0044 13 6 10.4552 3.8731 2.5957 14 1 10.0368 4.7126 3.1509 15 6 11.3504 4.3999 1.4723 16 6 11.2828 2.9990 3.5400 17 6 12.3247 3.8458 4.2244 18 1 12.3903 4.9017 4.0073 19 6 13.1950 3.2723 5.1271 20 7 14.1039 4.0113 5.7248 21 14 13.0821 1.4457 5.5021 22 1 13.9521 0.6930 4.5632 23 1 13.5281 1.1984 6.8968 24 1 11.6762 0.9941 5.3446 25 7 7.9978 3.3059 2.1234 26 6 7.3667 4.4141 2.8444 27 6 5.5290 2.8169 0.0626 28 6 4.0018 2.7429 0.0005 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.9583 0.7786 -0.8872 33 1 3.8436 -0.4675 1.2392 34 1 3.6916 1.0599 2.1419 35 1 6.0612 0.2408 0.4000 36 1 6.0304 0.2492 2.1795 37 1 12.1592 4.9925 1.9000 38 1 11.7688 3.5605 0.9171 39 1 10.7607 5.0228 0.7996 40 1 10.6286 2.5523 4.2886 41 1 11.7732 2.2106 2.9690 42 1 14.7159 3.6079 6.3601 43 1 7.2669 4.1524 3.8978 44 1 7.9835 5.3077 2.7490 45 1 6.3802 4.6069 2.4228 46 1 5.8419 3.8609 0.0771 47 1 5.9525 2.3232 -0.8121 48 1 3.5774 3.2484 0.8679 49 1 3.6508 3.2265 -0.9111 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647688821.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:26 Heat of formation + Delta-G solvation = -29.215360 kcal Electronic energy + Delta-G solvation = -29479.263538 eV Core-core repulsion = 25441.950114 eV Total energy + Delta-G solvation = -4037.313424 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.03850 -41.77421 -39.91796 -37.59879 -37.15588 -35.93140 -34.93539 -34.12744 -32.10065 -30.46467 -29.36184 -28.76718 -28.37894 -26.36904 -25.71739 -24.39708 -23.53686 -22.76056 -21.88697 -20.98914 -20.39455 -19.08066 -18.68068 -18.37284 -17.73619 -17.48000 -17.42802 -17.06355 -16.32273 -15.93275 -15.80222 -15.26426 -15.17832 -15.01927 -14.71053 -14.65786 -14.51432 -14.23796 -13.93018 -13.83110 -13.62637 -13.42627 -13.10666 -13.08262 -12.95054 -12.78760 -12.64499 -12.49724 -12.32494 -12.06680 -11.90530 -11.86709 -11.77807 -11.73346 -11.67329 -11.51415 -11.38879 -11.24842 -11.06815 -10.74932 -10.34317 -9.58601 -8.27449 -6.28884 0.71229 1.11676 1.23335 1.33844 1.36579 1.46778 1.71250 1.76986 2.35676 2.60624 3.08075 3.38957 3.42086 3.59177 3.70645 3.75997 3.90555 4.02153 4.05911 4.23051 4.23960 4.30003 4.31627 4.33697 4.36957 4.38818 4.47266 4.52854 4.57769 4.65267 4.66826 4.70372 4.74037 4.79905 4.91361 5.01376 5.06146 5.07139 5.12214 5.20304 5.25262 5.34924 5.37482 5.47019 5.55496 5.65345 5.69714 6.18656 6.28381 6.68047 6.76993 7.34955 7.71499 8.87812 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.024822 B = 0.002256 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.762505 B =12410.636733 C =12873.879484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.472 3.528 4 O -0.535 6.535 5 C -0.081 4.081 6 C -0.094 4.094 7 C 0.073 3.927 8 N -0.455 5.455 9 C 0.342 3.658 10 N -0.346 5.346 11 N -0.323 5.323 12 C 0.201 3.799 13 C 0.015 3.985 14 H 0.096 0.904 15 C -0.120 4.120 16 C 0.009 3.991 17 C -0.513 4.513 18 H 0.056 0.944 19 C 0.016 3.984 20 N -0.942 5.942 21 Si 0.932 3.068 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.262 1.262 25 N -0.470 5.470 26 C 0.071 3.929 27 C 0.066 3.934 28 C -0.089 4.089 29 H 0.062 0.938 30 H 0.129 0.871 31 H 0.061 0.939 32 H 0.128 0.872 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.062 0.938 40 H 0.006 0.994 41 H 0.013 0.987 42 H 0.266 0.734 43 H 0.087 0.913 44 H 0.102 0.898 45 H 0.115 0.885 46 H 0.086 0.914 47 H 0.051 0.949 48 H 0.080 0.920 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.470 -4.687 -12.218 32.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.316 3.684 4 O -0.424 6.424 5 C -0.100 4.100 6 C -0.132 4.132 7 C -0.054 4.054 8 N -0.181 5.181 9 C -0.016 4.016 10 N -0.191 5.191 11 N -0.163 5.163 12 C -0.068 4.068 13 C -0.006 4.006 14 H 0.114 0.886 15 C -0.178 4.178 16 C -0.029 4.029 17 C -0.551 4.551 18 H 0.075 0.925 19 C -0.181 4.181 20 N -0.582 5.582 21 Si 0.757 3.243 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.187 1.187 25 N -0.162 5.162 26 C -0.070 4.070 27 C -0.061 4.061 28 C -0.127 4.127 29 H 0.081 0.919 30 H 0.147 0.853 31 H 0.080 0.920 32 H 0.146 0.854 33 H 0.124 0.876 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.025 0.975 41 H 0.031 0.969 42 H 0.075 0.925 43 H 0.105 0.895 44 H 0.121 0.879 45 H 0.134 0.866 46 H 0.105 0.895 47 H 0.069 0.931 48 H 0.098 0.902 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -29.203 -5.306 -12.438 32.182 hybrid contribution 0.057 0.029 0.633 0.636 sum -29.145 -5.278 -11.806 31.885 Atomic orbital electron populations 1.23537 0.74927 1.05631 1.02477 1.86511 1.24841 1.32881 1.83528 1.23927 0.92244 0.81138 0.71070 1.90670 1.67861 1.37297 1.46565 1.21231 0.86235 0.99582 1.02908 1.21559 0.92620 1.02643 0.96380 1.22074 0.96216 0.84316 1.02805 1.58832 1.02718 1.17097 1.39494 1.22536 0.92066 0.89708 0.97246 1.74451 0.95261 1.26267 1.23090 1.73926 1.17123 1.09800 1.15433 1.25231 0.84335 0.96867 1.00338 1.19549 0.89434 0.95535 0.96114 0.88595 1.21594 0.99079 1.00687 0.96444 1.19414 0.94356 0.95300 0.93860 1.21276 1.14649 0.96336 1.22869 0.92534 1.25706 0.94895 1.01727 0.95802 1.70005 1.20741 1.37676 1.29815 0.85935 0.79206 0.81550 0.77588 1.19715 1.20654 1.18680 1.46382 1.06189 1.23605 1.40000 1.22372 1.00302 0.86826 0.97521 1.22254 0.95714 0.99572 0.88530 1.21437 0.92548 0.93970 1.04704 0.91947 0.85284 0.92044 0.85442 0.87568 0.90325 0.92413 0.90705 0.91603 0.93370 0.91873 0.97529 0.96870 0.92514 0.89473 0.87939 0.86643 0.89514 0.93109 0.90174 0.88923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 113.37 1.20 1.44 16 2 O -0.36 -4.83 10.50 -51.37 -0.54 -5.37 16 3 C 0.47 7.23 7.26 71.24 0.52 7.75 16 4 O -0.53 -11.17 15.73 21.95 0.35 -10.82 16 5 C -0.08 -0.96 2.70 -11.46 -0.03 -0.99 16 6 C -0.09 -1.15 5.31 30.65 0.16 -0.98 16 7 C 0.07 1.32 5.09 86.33 0.44 1.76 16 8 N -0.45 -9.38 4.64 -706.15 -3.28 -12.66 16 9 C 0.34 9.90 6.71 260.11 1.75 11.64 16 10 N -0.35 -12.59 11.69 -58.00 -0.68 -13.27 16 11 N -0.32 -13.24 12.18 -49.53 -0.60 -13.85 16 12 C 0.20 7.33 6.58 137.64 0.91 8.23 16 13 C 0.01 0.56 2.71 -11.54 -0.03 0.53 16 14 H 0.10 3.29 7.08 -2.39 -0.02 3.28 16 15 C -0.12 -4.32 8.98 71.98 0.65 -3.68 16 16 C 0.01 0.44 3.50 29.85 0.10 0.54 16 17 C -0.51 -28.23 8.96 25.60 0.23 -28.00 16 18 H 0.06 3.27 7.30 -2.91 -0.02 3.25 16 19 C 0.02 0.95 5.47 84.66 0.46 1.41 16 20 N -0.94 -57.52 13.96 21.45 0.30 -57.22 16 21 Si 0.93 45.54 27.47 68.60 1.88 47.43 16 22 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 23 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 24 H -0.26 -12.53 6.54 99.48 0.65 -11.88 16 25 N -0.47 -13.59 3.21 -538.18 -1.73 -15.31 16 26 C 0.07 1.36 10.81 127.77 1.38 2.74 16 27 C 0.07 1.05 5.40 86.32 0.47 1.52 16 28 C -0.09 -1.13 4.68 30.64 0.14 -0.99 16 29 H 0.06 0.56 8.13 -2.39 -0.02 0.54 16 30 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.57 8.13 -2.39 -0.02 0.55 16 32 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.11 0.99 8.14 -2.39 -0.02 0.98 16 34 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 35 H 0.06 1.12 8.06 -2.39 -0.02 1.10 16 36 H 0.07 1.57 8.10 -2.38 -0.02 1.55 16 37 H 0.07 2.54 6.95 -2.39 -0.02 2.53 16 38 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.06 1.88 8.14 -2.38 -0.02 1.87 16 40 H 0.01 0.31 7.20 -2.39 -0.02 0.30 16 41 H 0.01 0.65 7.57 -2.39 -0.02 0.64 16 42 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 43 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.10 1.71 7.48 -2.39 -0.02 1.69 16 45 H 0.12 1.60 8.11 -2.39 -0.02 1.59 16 46 H 0.09 1.34 8.10 -2.39 -0.02 1.32 16 47 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.08 1.15 8.04 -2.39 -0.02 1.13 16 49 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -75.31 396.68 4.92 -70.39 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 0.88 Total: 7.77 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 8.34 Total: 2.92 kcal Atomic # 7 Polarization: -106.33 SS G_CDS: -5.99 Total: -112.31 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.19 Total: -16.19 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.88 Total: 47.43 kcal Total: -75.31 4.92 -70.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647688821.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.174 kcal (2) G-P(sol) polarization free energy of solvation -75.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds