Wall clock time and date at job start Tue Mar 31 2020 20:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 C 1.53004 * 109.46876 * 240.00486 * 2 1 3 5 5 C 1.52998 * 109.47023 * 65.00137 * 4 2 1 6 6 C 1.50703 * 109.46948 * 180.02562 * 5 4 2 7 7 C 1.38271 * 119.98599 * 269.72610 * 6 5 4 8 8 C 1.38222 * 120.05276 * 179.72478 * 7 6 5 9 9 C 1.38221 * 120.02375 * 0.54495 * 8 7 6 10 10 C 1.38441 * 119.97205 * 359.72921 * 9 8 7 11 11 F 1.35106 * 120.02260 * 180.02562 * 10 9 8 12 12 C 1.38173 * 119.98892 * 89.99614 * 6 5 4 13 13 C 1.50700 * 109.47092 * 120.00550 * 2 1 3 14 14 O 1.21283 * 119.99803 * 119.99700 * 13 2 1 15 15 N 1.34777 * 119.99675 * 300.27576 * 13 2 1 16 16 C 1.46497 * 119.99525 * 179.72583 * 15 13 2 17 17 C 1.52999 * 109.46992 * 179.97438 * 16 15 13 18 18 H 1.09007 * 109.47508 * 304.99882 * 17 16 15 19 19 C 1.52992 * 109.47225 * 64.99918 * 17 16 15 20 20 C 1.53001 * 109.47200 * 184.99961 * 17 16 15 21 21 N 1.46507 * 109.47141 * 174.99952 * 20 17 16 22 22 C 1.36932 * 120.00060 * 179.97438 * 21 20 17 23 23 H 1.07999 * 120.00095 * 0.02562 * 22 21 20 24 24 C 1.38812 * 120.00309 * 179.97438 * 22 21 20 25 25 N 1.31622 * 119.99752 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00472 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46871 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.46963 * 119.99950 * 26 24 22 29 29 H 1.48494 * 109.47332 * 240.00207 * 26 24 22 30 30 H 1.09004 * 109.47239 * 299.99568 * 1 2 3 31 31 H 1.09005 * 109.47323 * 59.99789 * 1 2 3 32 32 H 1.09006 * 109.47458 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46700 * 185.00153 * 4 2 1 34 34 H 1.09000 * 109.46893 * 305.00094 * 4 2 1 35 35 H 1.09005 * 109.47209 * 299.99293 * 5 4 2 36 36 H 1.08991 * 109.47437 * 59.99960 * 5 4 2 37 37 H 1.08000 * 119.97225 * 359.97438 * 7 6 5 38 38 H 1.08002 * 119.98683 * 180.27316 * 8 7 6 39 39 H 1.07997 * 120.01186 * 179.74540 * 9 8 7 40 40 H 1.08002 * 120.01571 * 359.97438 * 12 6 5 41 41 H 0.97000 * 119.99894 * 359.71837 * 15 13 2 42 42 H 1.08995 * 109.47421 * 299.99467 * 16 15 13 43 43 H 1.09001 * 109.47621 * 60.00103 * 16 15 13 44 44 H 1.09002 * 109.47301 * 60.00195 * 19 17 16 45 45 H 1.09001 * 109.47633 * 180.02562 * 19 17 16 46 46 H 1.08998 * 109.47345 * 299.99889 * 19 17 16 47 47 H 1.08996 * 109.47431 * 294.99845 * 20 17 16 48 48 H 1.09001 * 109.47356 * 55.00657 * 20 17 16 49 49 H 0.97003 * 120.00137 * 359.97438 * 21 20 17 50 50 H 0.96998 * 120.00372 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.6352 0.0691 -2.4953 6 6 2.1369 -0.6415 -3.7259 7 6 3.3883 -0.3445 -4.2335 8 6 3.8522 -0.9996 -5.3588 9 6 3.0608 -1.9444 -5.9845 10 6 1.8054 -2.2385 -5.4805 11 9 1.0312 -3.1622 -6.0910 12 6 1.3440 -1.5856 -4.3497 13 6 2.0323 -0.7105 1.2304 14 8 2.7295 -1.6966 1.1190 15 7 1.7021 -0.2534 2.4545 16 6 2.1855 -0.9476 3.6505 17 6 1.6714 -0.2294 4.8998 18 1 1.9608 0.8208 4.8602 19 6 0.1464 -0.3363 4.9584 20 6 2.2764 -0.8782 6.1464 21 7 1.8798 -0.1177 7.3341 22 6 2.3049 -0.5136 8.5741 23 1 2.9328 -1.3863 8.6766 24 6 1.9296 0.2073 9.6995 25 7 1.1647 1.2711 9.5746 26 14 2.5088 -0.3333 11.3912 27 1 3.3506 -1.5497 11.2608 28 1 3.3054 0.7551 12.0127 29 1 1.3316 -0.6345 12.2446 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1262 -0.7994 -1.2057 34 1 1.6053 -1.7197 -1.2953 35 1 0.5488 0.1473 -2.5390 36 1 2.0698 1.0676 -2.4494 37 1 4.0054 0.3970 -3.7480 38 1 4.8316 -0.7699 -5.7518 39 1 3.4218 -2.4531 -6.8661 40 1 0.3650 -1.8147 -3.9554 41 1 1.1445 0.5353 2.5435 42 1 1.8217 -1.9751 3.6463 43 1 3.2755 -0.9481 3.6549 44 1 -0.1430 -1.3864 4.9982 45 1 -0.2200 0.1758 5.8482 46 1 -0.2846 0.1260 4.0704 47 1 1.9156 -1.9030 6.2341 48 1 3.3632 -0.8814 6.0633 49 1 1.3161 0.6664 7.2422 50 1 0.9022 1.7747 10.3610 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666666893.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:05 Heat of formation + Delta-G solvation = -79.125654 kcal Electronic energy + Delta-G solvation = -27492.984930 eV Core-core repulsion = 23433.587272 eV Total energy + Delta-G solvation = -4059.397658 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.25387 -40.18368 -39.51377 -37.01378 -35.82510 -34.39418 -32.92296 -32.20689 -30.96455 -30.04762 -28.70551 -26.61519 -25.80195 -25.15586 -23.25339 -22.99352 -22.15947 -21.21394 -20.34337 -19.53861 -17.87498 -17.26162 -16.82433 -16.74429 -16.56357 -16.15073 -15.94552 -15.73584 -14.97579 -14.86982 -14.46246 -14.17872 -14.10508 -14.04037 -13.60806 -13.57267 -13.20145 -13.13348 -12.90313 -12.77479 -12.58941 -12.32251 -12.22429 -12.05702 -11.93846 -11.80641 -11.57431 -11.16253 -11.06561 -10.97958 -10.92984 -10.71754 -10.57691 -10.42434 -10.04727 -9.79933 -9.65101 -9.36629 -9.06227 -9.02305 -8.89263 -6.93328 -5.78409 -3.06678 0.73602 0.78031 2.60675 3.07774 3.22354 3.42709 3.48813 3.50805 3.81382 4.17259 4.30108 4.46795 4.54721 4.58544 4.60654 4.66777 4.77746 4.87441 4.97212 5.01982 5.07925 5.15224 5.20756 5.24278 5.37055 5.43647 5.49298 5.50720 5.56834 5.63354 5.64964 5.69734 5.80402 5.83819 5.91194 5.95224 5.99280 6.01364 6.10219 6.11597 6.23340 6.37874 6.47896 6.49065 6.63655 6.76040 6.85570 7.48580 7.70126 8.19939 8.40758 9.52197 10.09419 10.44254 11.44656 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.033961 B = 0.001450 C = 0.001439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.278176 B =19303.185416 C =19456.713540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 H 0.098 0.902 4 C -0.094 4.094 5 C -0.085 4.085 6 C -0.048 4.048 7 C -0.127 4.127 8 C -0.088 4.088 9 C -0.161 4.161 10 C 0.099 3.901 11 F -0.141 7.141 12 C -0.152 4.152 13 C 0.513 3.487 14 O -0.543 6.543 15 N -0.724 5.724 16 C 0.126 3.874 17 C -0.110 4.110 18 H 0.076 0.924 19 C -0.141 4.141 20 C 0.160 3.840 21 N -0.731 5.731 22 C -0.238 4.238 23 H 0.071 0.929 24 C -0.014 4.014 25 N -0.934 5.934 26 Si 0.907 3.093 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.400 0.600 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.052 0.948 45 H 0.069 0.931 46 H 0.042 0.958 47 H 0.022 0.978 48 H 0.021 0.979 49 H 0.384 0.616 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.491 -0.312 -32.783 32.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.133 4.133 3 H 0.116 0.884 4 C -0.132 4.132 5 C -0.122 4.122 6 C -0.048 4.048 7 C -0.146 4.146 8 C -0.106 4.106 9 C -0.180 4.180 10 C 0.080 3.920 11 F -0.120 7.120 12 C -0.171 4.171 13 C 0.299 3.701 14 O -0.420 6.420 15 N -0.376 5.376 16 C 0.002 3.998 17 C -0.129 4.129 18 H 0.094 0.906 19 C -0.198 4.198 20 C 0.032 3.968 21 N -0.375 5.375 22 C -0.370 4.370 23 H 0.089 0.911 24 C -0.210 4.210 25 N -0.583 5.583 26 Si 0.738 3.262 27 H -0.205 1.205 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.153 0.847 41 H 0.234 0.766 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.088 0.912 46 H 0.061 0.939 47 H 0.040 0.960 48 H 0.039 0.961 49 H 0.218 0.782 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.069 -1.176 -32.730 32.751 hybrid contribution -0.280 0.200 0.933 0.994 sum -0.211 -0.976 -31.797 31.813 Atomic orbital electron populations 1.21856 0.92862 1.02989 1.02800 1.21332 0.97661 1.00964 0.93304 0.88388 1.21373 1.02257 0.98979 0.90590 1.20759 1.01712 0.98687 0.91042 1.19747 0.93823 0.95344 0.95924 1.21172 0.95750 1.00889 0.96744 1.21027 0.99506 0.94926 0.95164 1.21157 0.93578 1.01016 1.02271 1.17727 0.90153 0.90401 0.93724 1.91508 1.74484 1.63692 1.82289 1.21059 1.01735 0.98472 0.95784 1.20594 0.80165 0.84686 0.84669 1.90708 1.38014 1.26382 1.86883 1.46094 1.53589 1.32077 1.05824 1.21409 0.99193 0.96240 0.82947 1.21548 0.96607 1.00534 0.94245 0.90577 1.21785 0.94634 1.01962 1.01449 1.20579 0.96259 0.94468 0.85498 1.42342 1.61278 1.32706 1.01195 1.19295 1.24948 1.08676 0.84053 0.91090 1.24732 1.00554 0.97846 0.97892 1.69665 1.40557 1.19485 1.28612 0.86110 0.77817 0.77665 0.84578 1.20537 1.21881 1.21874 0.91911 0.91216 0.91922 0.90673 0.90947 0.90240 0.90303 0.85216 0.84972 0.84888 0.84735 0.76553 0.91429 0.91442 0.92842 0.91167 0.93945 0.96009 0.96146 0.78225 0.93593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 8.84 37.16 0.33 -0.56 16 2 C -0.11 -0.84 2.73 -91.77 -0.25 -1.09 16 3 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.09 -0.73 4.01 -26.73 -0.11 -0.84 16 5 C -0.08 -0.47 5.10 -27.88 -0.14 -0.62 16 6 C -0.05 -0.34 5.13 -104.63 -0.54 -0.87 16 7 C -0.13 -0.82 9.70 -39.58 -0.38 -1.20 16 8 C -0.09 -0.54 10.04 -39.59 -0.40 -0.94 16 9 C -0.16 -1.15 10.03 -39.51 -0.40 -1.54 16 10 C 0.10 0.84 7.30 -39.42 -0.29 0.56 16 11 F -0.14 -1.35 17.27 2.25 0.04 -1.31 16 12 C -0.15 -1.17 9.68 -39.52 -0.38 -1.56 16 13 C 0.51 5.99 7.16 -10.98 -0.08 5.91 16 14 O -0.54 -8.62 15.92 5.55 0.09 -8.53 16 15 N -0.72 -7.97 5.17 -60.30 -0.31 -8.28 16 16 C 0.13 1.70 5.06 -4.04 -0.02 1.68 16 17 C -0.11 -1.66 2.46 -90.62 -0.22 -1.88 16 18 H 0.08 1.16 8.14 -51.92 -0.42 0.73 16 19 C -0.14 -2.03 8.94 37.15 0.33 -1.69 16 20 C 0.16 3.16 5.65 -4.04 -0.02 3.13 16 21 N -0.73 -18.17 5.33 -59.91 -0.32 -18.49 16 22 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 23 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 24 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 25 N -0.93 -27.98 13.06 55.49 0.72 -27.25 16 26 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 30 H 0.06 0.35 7.55 -51.93 -0.39 -0.04 16 31 H 0.07 0.30 6.57 -51.93 -0.34 -0.04 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.70 7.95 -51.93 -0.41 0.28 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.37 6.51 -51.93 -0.34 0.03 16 36 H 0.08 0.35 8.08 -51.93 -0.42 -0.07 16 37 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 38 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 39 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.40 3.49 7.06 -40.82 -0.29 3.20 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.07 1.19 7.18 -51.93 -0.37 0.82 16 46 H 0.04 0.48 7.18 -51.93 -0.37 0.11 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.38 9.91 6.85 -40.82 -0.28 9.63 16 50 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 411.54 15.07 6.20 6.20 Total: -1.00 -33.32 411.54 -9.68 -43.00 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -8.26 Total: 6.15 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -2.82 Total: -8.84 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.09 Total: -54.03 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.09 Total: -8.53 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.32 -9.68 -43.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666666893.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.126 kcal (2) G-P(sol) polarization free energy of solvation -33.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds