Wall clock time and date at job start Tue Mar 31 2020 20:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 C 1.53004 * 109.46876 * 240.00486 * 2 1 3 5 5 C 1.52998 * 109.47023 * 65.00137 * 4 2 1 6 6 C 1.50703 * 109.46948 * 180.02562 * 5 4 2 7 7 C 1.38271 * 119.98599 * 269.72610 * 6 5 4 8 8 C 1.38222 * 120.05276 * 179.72478 * 7 6 5 9 9 C 1.38221 * 120.02375 * 0.54495 * 8 7 6 10 10 C 1.38441 * 119.97205 * 359.72921 * 9 8 7 11 11 F 1.35106 * 120.02260 * 180.02562 * 10 9 8 12 12 C 1.38173 * 119.98892 * 89.99614 * 6 5 4 13 13 C 1.50700 * 109.47092 * 120.00550 * 2 1 3 14 14 O 1.21283 * 119.99803 * 119.99700 * 13 2 1 15 15 N 1.34777 * 119.99675 * 300.27576 * 13 2 1 16 16 C 1.46497 * 119.99525 * 179.72583 * 15 13 2 17 17 C 1.52999 * 109.46992 * 179.97438 * 16 15 13 18 18 H 1.09007 * 109.47508 * 304.99882 * 17 16 15 19 19 C 1.52992 * 109.47225 * 64.99918 * 17 16 15 20 20 C 1.53001 * 109.47200 * 184.99961 * 17 16 15 21 21 N 1.46507 * 109.47141 * 174.99952 * 20 17 16 22 22 C 1.36932 * 120.00060 * 179.97438 * 21 20 17 23 23 H 1.07999 * 120.00095 * 0.02562 * 22 21 20 24 24 C 1.38812 * 120.00309 * 179.97438 * 22 21 20 25 25 N 1.31622 * 119.99752 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00472 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46871 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.46963 * 119.99950 * 26 24 22 29 29 H 1.48494 * 109.47332 * 240.00207 * 26 24 22 30 30 H 1.09004 * 109.47239 * 299.99568 * 1 2 3 31 31 H 1.09005 * 109.47323 * 59.99789 * 1 2 3 32 32 H 1.09006 * 109.47458 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46700 * 185.00153 * 4 2 1 34 34 H 1.09000 * 109.46893 * 305.00094 * 4 2 1 35 35 H 1.09005 * 109.47209 * 299.99293 * 5 4 2 36 36 H 1.08991 * 109.47437 * 59.99960 * 5 4 2 37 37 H 1.08000 * 119.97225 * 359.97438 * 7 6 5 38 38 H 1.08002 * 119.98683 * 180.27316 * 8 7 6 39 39 H 1.07997 * 120.01186 * 179.74540 * 9 8 7 40 40 H 1.08002 * 120.01571 * 359.97438 * 12 6 5 41 41 H 0.97000 * 119.99894 * 359.71837 * 15 13 2 42 42 H 1.08995 * 109.47421 * 299.99467 * 16 15 13 43 43 H 1.09001 * 109.47621 * 60.00103 * 16 15 13 44 44 H 1.09002 * 109.47301 * 60.00195 * 19 17 16 45 45 H 1.09001 * 109.47633 * 180.02562 * 19 17 16 46 46 H 1.08998 * 109.47345 * 299.99889 * 19 17 16 47 47 H 1.08996 * 109.47431 * 294.99845 * 20 17 16 48 48 H 1.09001 * 109.47356 * 55.00657 * 20 17 16 49 49 H 0.97003 * 120.00137 * 359.97438 * 21 20 17 50 50 H 0.96998 * 120.00372 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.6352 0.0691 -2.4953 6 6 2.1369 -0.6415 -3.7259 7 6 3.3883 -0.3445 -4.2335 8 6 3.8522 -0.9996 -5.3588 9 6 3.0608 -1.9444 -5.9845 10 6 1.8054 -2.2385 -5.4805 11 9 1.0312 -3.1622 -6.0910 12 6 1.3440 -1.5856 -4.3497 13 6 2.0323 -0.7105 1.2304 14 8 2.7295 -1.6966 1.1190 15 7 1.7021 -0.2534 2.4545 16 6 2.1855 -0.9476 3.6505 17 6 1.6714 -0.2294 4.8998 18 1 1.9608 0.8208 4.8602 19 6 0.1464 -0.3363 4.9584 20 6 2.2764 -0.8782 6.1464 21 7 1.8798 -0.1177 7.3341 22 6 2.3049 -0.5136 8.5741 23 1 2.9328 -1.3863 8.6766 24 6 1.9296 0.2073 9.6995 25 7 1.1647 1.2711 9.5746 26 14 2.5088 -0.3333 11.3912 27 1 3.3506 -1.5497 11.2608 28 1 3.3054 0.7551 12.0127 29 1 1.3316 -0.6345 12.2446 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1262 -0.7994 -1.2057 34 1 1.6053 -1.7197 -1.2953 35 1 0.5488 0.1473 -2.5390 36 1 2.0698 1.0676 -2.4494 37 1 4.0054 0.3970 -3.7480 38 1 4.8316 -0.7699 -5.7518 39 1 3.4218 -2.4531 -6.8661 40 1 0.3650 -1.8147 -3.9554 41 1 1.1445 0.5353 2.5435 42 1 1.8217 -1.9751 3.6463 43 1 3.2755 -0.9481 3.6549 44 1 -0.1430 -1.3864 4.9982 45 1 -0.2200 0.1758 5.8482 46 1 -0.2846 0.1260 4.0704 47 1 1.9156 -1.9030 6.2341 48 1 3.3632 -0.8814 6.0633 49 1 1.3161 0.6664 7.2422 50 1 0.9022 1.7747 10.3610 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666666893.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:04 Heat of formation + Delta-G solvation = -98.325676 kcal Electronic energy + Delta-G solvation = -27493.817506 eV Core-core repulsion = 23433.587272 eV Total energy + Delta-G solvation = -4060.230233 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.90706 -41.05665 -40.08520 -38.32049 -36.55024 -35.94167 -34.17515 -33.14482 -31.81754 -31.46381 -29.28134 -27.76642 -27.14263 -26.10406 -24.53719 -23.69042 -23.20458 -21.86941 -21.49224 -20.56663 -19.19141 -18.43790 -17.71374 -17.38544 -17.26961 -17.06972 -16.62995 -16.59373 -16.48568 -15.96466 -15.53657 -15.46808 -15.07627 -14.88641 -14.66210 -14.58486 -14.23101 -14.08247 -13.75594 -13.61903 -13.57397 -13.48617 -13.23277 -12.95505 -12.82916 -12.70179 -12.48307 -12.36384 -12.18773 -12.13280 -12.10607 -11.98846 -11.72666 -11.67727 -11.62605 -11.50922 -10.95802 -10.71899 -10.05311 -9.88641 -9.60276 -8.99496 -7.96015 -5.24087 0.20119 0.27196 1.47933 1.47957 1.58316 1.69842 2.22139 2.56519 2.64827 3.27408 3.37904 3.65277 3.72996 3.75759 3.84671 3.96313 4.02608 4.05235 4.08993 4.19762 4.31807 4.34012 4.38895 4.47245 4.54740 4.56623 4.61326 4.71344 4.76970 4.80930 4.93942 4.97681 5.00850 5.04247 5.05254 5.10121 5.13031 5.15023 5.19435 5.34070 5.36428 5.40932 5.44328 5.45758 5.50076 5.52506 5.62405 5.98017 6.26966 6.60963 7.30628 7.33953 8.08870 8.33587 9.27519 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.033961 B = 0.001450 C = 0.001439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.278176 B =19303.185416 C =19456.713540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.101 4.101 3 H 0.126 0.874 4 C -0.089 4.089 5 C -0.076 4.076 6 C -0.057 4.057 7 C -0.132 4.132 8 C -0.091 4.091 9 C -0.169 4.169 10 C 0.072 3.928 11 F -0.154 7.154 12 C -0.163 4.163 13 C 0.509 3.491 14 O -0.590 6.590 15 N -0.714 5.714 16 C 0.138 3.862 17 C -0.093 4.093 18 H 0.080 0.920 19 C -0.135 4.135 20 C 0.156 3.844 21 N -0.740 5.740 22 C -0.248 4.248 23 H 0.073 0.927 24 C -0.072 4.072 25 N -0.967 5.967 26 Si 0.972 3.028 27 H -0.269 1.269 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.149 0.851 38 H 0.157 0.843 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.414 0.586 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.049 0.951 45 H 0.042 0.958 46 H 0.078 0.922 47 H 0.019 0.981 48 H 0.018 0.982 49 H 0.377 0.623 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.387 0.879 -33.810 33.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 H 0.144 0.856 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.057 4.057 7 C -0.150 4.150 8 C -0.108 4.108 9 C -0.187 4.187 10 C 0.053 3.947 11 F -0.133 7.133 12 C -0.182 4.182 13 C 0.297 3.703 14 O -0.471 6.471 15 N -0.366 5.366 16 C 0.013 3.987 17 C -0.112 4.112 18 H 0.098 0.902 19 C -0.192 4.192 20 C 0.029 3.971 21 N -0.384 5.384 22 C -0.380 4.380 23 H 0.091 0.909 24 C -0.265 4.265 25 N -0.617 5.617 26 Si 0.801 3.199 27 H -0.193 1.193 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.167 0.833 38 H 0.174 0.826 39 H 0.163 0.837 40 H 0.157 0.843 41 H 0.252 0.748 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.097 0.903 47 H 0.037 0.963 48 H 0.036 0.964 49 H 0.210 0.790 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.166 0.016 -33.784 33.784 hybrid contribution -0.263 -0.211 1.199 1.246 sum -0.096 -0.196 -32.585 32.585 Atomic orbital electron populations 1.21888 0.91298 1.02670 1.04494 1.21362 0.98734 1.01538 0.90599 0.85574 1.21283 1.00941 0.98494 0.91982 1.20735 1.02677 0.98890 0.89009 1.19965 0.94075 0.95263 0.96401 1.21511 0.95716 1.01027 0.96724 1.21361 1.00330 0.94211 0.94934 1.21408 0.93214 1.01330 1.02789 1.18053 0.90955 0.91095 0.94630 1.91467 1.74918 1.64283 1.82606 1.21235 1.02315 0.98809 0.95807 1.21401 0.79128 0.84113 0.85676 1.90693 1.40200 1.28635 1.87527 1.45959 1.53467 1.32258 1.04963 1.21085 0.98510 0.95836 0.83288 1.21324 0.96916 1.00291 0.92695 0.90186 1.21720 0.93900 1.01746 1.01851 1.20733 0.96315 0.94171 0.85916 1.42496 1.61094 1.32896 1.01878 1.19669 1.24356 1.08452 0.85500 0.90941 1.25518 1.01266 0.98244 1.01439 1.69803 1.41982 1.20651 1.29292 0.85097 0.77245 0.77484 0.80071 1.19335 1.21913 1.21937 0.90941 0.88848 0.93282 0.92481 0.93070 0.88868 0.88283 0.83341 0.82560 0.83715 0.84283 0.74836 0.92291 0.92471 0.93199 0.93891 0.90334 0.96294 0.96377 0.79031 0.93947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.84 71.98 0.64 -0.68 16 2 C -0.10 -1.27 2.73 -11.54 -0.03 -1.30 16 3 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 4 C -0.09 -1.26 4.01 30.59 0.12 -1.14 16 5 C -0.08 -0.66 5.10 29.85 0.15 -0.51 16 6 C -0.06 -0.71 5.13 -19.87 -0.10 -0.81 16 7 C -0.13 -1.45 9.70 22.27 0.22 -1.23 16 8 C -0.09 -0.97 10.04 22.26 0.22 -0.74 16 9 C -0.17 -2.30 10.03 22.31 0.22 -2.08 16 10 C 0.07 1.23 7.30 22.38 0.16 1.40 16 11 F -0.15 -3.06 17.27 44.97 0.78 -2.28 16 12 C -0.16 -2.47 9.68 22.31 0.22 -2.25 16 13 C 0.51 11.19 7.16 87.66 0.63 11.81 16 14 O -0.59 -18.76 15.92 -3.04 -0.05 -18.80 16 15 N -0.71 -14.33 5.17 -463.07 -2.40 -16.72 16 16 C 0.14 3.59 5.06 86.38 0.44 4.03 16 17 C -0.09 -2.72 2.46 -10.80 -0.03 -2.74 16 18 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 19 C -0.13 -3.70 8.94 71.98 0.64 -3.05 16 20 C 0.16 6.13 5.65 86.38 0.49 6.62 16 21 N -0.74 -37.06 5.33 -343.45 -1.83 -38.89 16 22 C -0.25 -13.89 9.99 84.03 0.84 -13.05 16 23 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 24 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 25 N -0.97 -58.33 13.06 21.65 0.28 -58.05 16 26 Si 0.97 46.06 29.55 68.60 2.03 48.08 16 27 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 28 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 29 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 30 H 0.07 0.53 7.55 -2.38 -0.02 0.52 16 31 H 0.09 0.44 6.57 -2.38 -0.02 0.42 16 32 H 0.05 0.59 8.14 -2.38 -0.02 0.58 16 33 H 0.06 1.02 7.95 -2.39 -0.02 1.00 16 34 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.09 0.57 6.51 -2.38 -0.02 0.55 16 36 H 0.10 0.50 8.08 -2.39 -0.02 0.48 16 37 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 38 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 39 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 40 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 41 H 0.41 5.93 7.06 -92.71 -0.65 5.28 16 42 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.04 1.43 7.18 -2.39 -0.02 1.41 16 46 H 0.08 1.57 7.18 -2.39 -0.02 1.55 16 47 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.38 19.68 6.85 -92.71 -0.64 19.05 16 50 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -73.41 411.54 3.76 -69.66 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: -0.35 Total: 26.41 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: 5.30 Total: -9.40 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -3.94 Total: -113.67 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.05 Total: -18.80 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.78 Total: -2.28 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.08 kcal Total: -73.41 3.76 -69.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666666893.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.669 kcal (2) G-P(sol) polarization free energy of solvation -73.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds