Wall clock time and date at job start Tue Mar 31 2020 20:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 5 5 N 1.46498 * 109.47059 * 64.99625 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31611 * 120.00081 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99814 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47483 * 90.00178 * 10 8 6 12 12 H 1.48498 * 109.47011 * 210.00042 * 10 8 6 13 13 H 1.48502 * 109.47495 * 329.99664 * 10 8 6 14 14 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 15 15 N 1.46490 * 109.47559 * 295.00069 * 14 2 1 16 16 C 1.34773 * 120.00384 * 179.97438 * 15 14 2 17 17 O 1.21279 * 119.99608 * 0.02562 * 16 15 14 18 18 C 1.50699 * 120.00658 * 179.97438 * 16 15 14 19 19 H 1.09002 * 109.46570 * 60.00093 * 18 16 15 20 20 C 1.52995 * 109.47173 * 300.00961 * 18 16 15 21 21 C 1.52993 * 109.47630 * 180.02562 * 18 16 15 22 22 C 1.52996 * 109.47387 * 185.00087 * 21 18 16 23 23 C 1.50700 * 109.47184 * 180.02562 * 22 21 18 24 24 C 1.38269 * 119.98799 * 269.72665 * 23 22 21 25 25 C 1.38231 * 120.05113 * 179.72500 * 24 23 22 26 26 C 1.38221 * 120.02106 * 0.55080 * 25 24 23 27 27 C 1.38436 * 119.97496 * 359.72788 * 26 25 24 28 28 F 1.35100 * 120.02287 * 180.02562 * 27 26 25 29 29 C 1.38175 * 119.98801 * 90.00489 * 23 22 21 30 30 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 31 31 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 32 32 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 34 34 H 1.08994 * 109.46974 * 185.00040 * 4 2 1 35 35 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 36 36 H 0.97008 * 120.00329 * 179.97438 * 9 8 6 37 37 H 1.08998 * 109.46886 * 55.00501 * 14 2 1 38 38 H 1.09002 * 109.46923 * 174.99751 * 14 2 1 39 39 H 0.97002 * 120.00315 * 0.02562 * 15 14 2 40 40 H 1.09001 * 109.47384 * 59.99609 * 20 18 16 41 41 H 1.09006 * 109.46994 * 179.97438 * 20 18 16 42 42 H 1.08996 * 109.47085 * 299.99014 * 20 18 16 43 43 H 1.09001 * 109.47659 * 305.00819 * 21 18 16 44 44 H 1.09003 * 109.47154 * 65.00151 * 21 18 16 45 45 H 1.08994 * 109.47504 * 300.00292 * 22 21 18 46 46 H 1.08997 * 109.47073 * 60.00631 * 22 21 18 47 47 H 1.07995 * 119.97638 * 359.97438 * 24 23 22 48 48 H 1.07997 * 119.98758 * 180.27735 * 25 24 23 49 49 H 1.08000 * 120.01026 * 179.74700 * 26 25 24 50 50 H 1.08003 * 120.00837 * 359.97438 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.0064 -0.4178 -3.6852 7 1 2.5675 -1.3351 -3.7860 8 6 1.6441 0.3020 -4.8155 9 7 1.9838 -0.1336 -6.0100 10 14 0.6743 1.8890 -4.6410 11 1 1.6138 3.0324 -4.5180 12 1 -0.1830 2.0794 -5.8385 13 1 -0.1791 1.8169 -3.4278 14 6 2.0400 -0.7211 1.2494 15 7 1.6525 0.0355 2.4424 16 6 1.9956 -0.4133 3.6660 17 8 2.6256 -1.4434 3.7793 18 6 1.5975 0.3653 4.8933 19 1 0.5112 0.4443 4.9368 20 6 2.2084 1.7665 4.8287 21 6 2.1074 -0.3558 6.1425 22 6 1.5979 0.3658 7.3917 23 6 2.1007 -0.3442 8.6222 24 6 1.3507 -1.3574 9.1904 25 6 1.8134 -2.0134 10.3158 26 6 3.0211 -1.6493 10.8810 27 6 3.7700 -0.6312 10.3163 28 9 4.9508 -0.2749 10.8676 29 6 3.3082 0.0214 9.1856 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6054 -1.7199 -1.2950 34 1 3.1263 -0.7995 -1.2055 35 1 1.1488 0.8593 -2.3518 36 1 1.7304 0.3692 -6.7999 37 1 1.6054 -1.7197 1.2953 38 1 3.1263 -0.7993 1.2057 39 1 1.1483 0.8592 2.3518 40 1 1.8454 2.2806 3.9387 41 1 1.9201 2.3299 5.7163 42 1 3.2947 1.6876 4.7852 43 1 1.7438 -1.3834 6.1428 44 1 3.1974 -0.3562 6.1424 45 1 1.9615 1.3933 7.3915 46 1 0.5079 0.3661 7.3920 47 1 0.4047 -1.6392 8.7523 48 1 1.2289 -2.8076 10.7561 49 1 3.3804 -2.1592 11.7626 50 1 3.8919 0.8156 8.7439 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666666894.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:09 Heat of formation + Delta-G solvation = -74.596372 kcal Electronic energy + Delta-G solvation = -27562.679757 eV Core-core repulsion = 23503.478503 eV Total energy + Delta-G solvation = -4059.201254 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.27470 -40.24319 -39.54993 -37.16745 -35.88648 -34.53209 -32.96462 -32.24597 -30.99215 -30.52350 -28.75515 -26.78316 -25.96594 -25.29843 -23.25017 -22.91418 -21.92437 -21.23837 -20.45417 -19.73559 -17.95353 -17.56644 -16.90072 -16.84166 -16.59084 -16.23249 -15.96540 -15.80172 -15.22176 -14.69804 -14.50274 -14.29553 -14.16376 -14.05445 -13.78963 -13.62699 -13.25628 -13.19868 -12.98596 -12.84867 -12.54598 -12.45863 -12.27435 -12.24343 -11.96391 -11.87457 -11.60964 -11.46823 -11.19379 -11.06326 -11.02000 -10.77889 -10.64473 -10.60883 -10.15968 -9.81899 -9.59629 -9.39240 -9.10130 -9.08681 -8.92125 -7.25213 -5.78365 -3.14108 0.71177 0.75619 2.54530 3.02342 3.17607 3.33571 3.36113 3.42514 3.79054 4.13934 4.27241 4.41237 4.51188 4.56061 4.56579 4.63334 4.74676 4.83788 4.84440 4.94365 5.03263 5.06992 5.09713 5.19012 5.21517 5.39406 5.43919 5.47110 5.52336 5.58919 5.62167 5.63920 5.67298 5.71718 5.79747 5.85034 5.88117 5.89177 5.97144 6.06783 6.08520 6.21102 6.39110 6.43322 6.45549 6.63639 6.72824 7.40580 7.98049 8.13257 8.40439 9.19376 9.91406 10.11088 11.40078 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.031029 B = 0.001524 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.173233 B =18367.809707 C =18440.748878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 H 0.075 0.925 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.245 4.245 7 H 0.090 0.910 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.126 3.874 15 N -0.726 5.726 16 C 0.513 3.487 17 O -0.541 6.541 18 C -0.111 4.111 19 H 0.098 0.902 20 C -0.148 4.148 21 C -0.094 4.094 22 C -0.085 4.085 23 C -0.049 4.049 24 C -0.127 4.127 25 C -0.088 4.088 26 C -0.161 4.161 27 C 0.099 3.901 28 F -0.141 7.141 29 C -0.152 4.152 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.030 0.970 34 H 0.030 0.970 35 H 0.360 0.640 36 H 0.259 0.741 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.399 0.601 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.130 0.870 48 H 0.132 0.868 49 H 0.133 0.867 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.470 2.714 36.066 36.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 H 0.094 0.906 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.375 4.375 7 H 0.108 0.892 8 C -0.192 4.192 9 N -0.582 5.582 10 Si 0.716 3.284 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.002 3.998 15 N -0.377 5.377 16 C 0.299 3.701 17 O -0.418 6.418 18 C -0.132 4.132 19 H 0.116 0.884 20 C -0.205 4.205 21 C -0.132 4.132 22 C -0.122 4.122 23 C -0.049 4.049 24 C -0.146 4.146 25 C -0.106 4.106 26 C -0.180 4.180 27 C 0.080 3.920 28 F -0.120 7.120 29 C -0.170 4.170 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.193 0.807 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.234 0.766 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.148 0.852 48 H 0.150 0.850 49 H 0.151 0.849 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.862 1.823 35.959 36.119 hybrid contribution -0.689 1.585 -0.046 1.729 sum -3.550 3.408 35.913 36.249 Atomic orbital electron populations 1.21815 0.94787 1.02253 1.01209 1.21604 0.96605 1.00516 0.94631 0.90636 1.20553 0.97208 0.94246 0.84313 1.42679 1.67565 1.27384 1.02365 1.19075 1.29413 1.07170 0.81804 0.89175 1.24672 1.00769 0.98625 0.95095 1.69700 1.51282 1.40221 0.96961 0.86544 0.80226 0.84848 0.76830 1.21114 1.21710 1.20409 1.21387 1.00266 0.95293 0.82811 1.46084 1.57766 1.27853 1.06029 1.20596 0.79326 0.85558 0.84611 1.90715 1.39738 1.24573 1.86725 1.21329 1.02290 0.96268 0.93341 0.88417 1.21857 1.01683 0.94254 1.02745 1.21375 1.01864 0.99455 0.90534 1.20752 1.01240 0.99152 0.91030 1.19739 0.93417 0.95735 0.95993 1.21168 1.00605 0.96342 0.96446 1.21029 0.95015 0.99069 0.95504 1.21161 0.96283 0.98386 1.02169 1.17723 0.82812 0.97033 0.94403 1.91508 1.44467 1.91126 1.84849 1.21059 0.97668 1.02225 0.96095 0.93691 0.91788 0.92395 0.95165 0.95240 0.80653 0.93051 0.91226 0.91225 0.76634 0.91980 0.91188 0.91863 0.90654 0.90903 0.90250 0.90331 0.85235 0.84963 0.84870 0.84734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.94 37.16 0.33 -1.54 16 2 C -0.11 -1.59 2.46 -90.62 -0.22 -1.81 16 3 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 4 C 0.16 3.07 5.65 -4.04 -0.02 3.05 16 5 N -0.75 -17.53 5.13 -59.91 -0.31 -17.83 16 6 C -0.24 -6.92 10.47 -15.06 -0.16 -7.07 16 7 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 8 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 9 N -0.93 -29.30 13.97 55.49 0.78 -28.53 16 10 Si 0.89 21.79 27.74 -169.99 -4.71 17.08 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 13 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 14 C 0.13 1.59 5.06 -4.05 -0.02 1.57 16 15 N -0.73 -7.41 5.18 -60.30 -0.31 -7.72 16 16 C 0.51 5.69 7.15 -10.99 -0.08 5.61 16 17 O -0.54 -8.31 15.92 5.56 0.09 -8.22 16 18 C -0.11 -0.78 2.73 -91.78 -0.25 -1.03 16 19 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 20 C -0.15 -0.83 8.84 37.16 0.33 -0.50 16 21 C -0.09 -0.70 4.01 -26.74 -0.11 -0.81 16 22 C -0.08 -0.44 5.10 -27.89 -0.14 -0.59 16 23 C -0.05 -0.33 5.13 -104.63 -0.54 -0.86 16 24 C -0.13 -0.79 9.70 -39.57 -0.38 -1.17 16 25 C -0.09 -0.52 10.04 -39.59 -0.40 -0.92 16 26 C -0.16 -1.11 10.03 -39.51 -0.40 -1.51 16 27 C 0.10 0.83 7.30 -39.42 -0.29 0.54 16 28 F -0.14 -1.33 17.27 2.25 0.04 -1.29 16 29 C -0.15 -1.14 9.68 -39.52 -0.38 -1.52 16 30 H 0.04 0.46 7.18 -51.93 -0.37 0.08 16 31 H 0.06 0.97 7.18 -51.93 -0.37 0.60 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.36 8.08 4.71 -40.82 -0.19 7.88 16 36 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.40 3.12 7.07 -40.82 -0.29 2.83 16 40 H 0.06 0.32 7.57 -51.93 -0.39 -0.08 16 41 H 0.07 0.28 6.57 -51.93 -0.34 -0.06 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.67 7.96 -51.93 -0.41 0.26 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.08 0.34 6.51 -51.93 -0.34 0.00 16 46 H 0.08 0.32 8.08 -51.93 -0.42 -0.10 16 47 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 48 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 49 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 50 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 LS Contribution 408.44 15.07 6.16 6.16 Total: -1.00 -34.31 408.44 -9.32 -43.63 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -8.22 Total: 5.27 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -2.82 Total: -8.54 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.16 Total: -54.09 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.09 Total: -8.22 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.71 Total: 17.08 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.31 -9.32 -43.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666666894.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.970 kcal (2) G-P(sol) polarization free energy of solvation -34.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds