Wall clock time and date at job start Tue Mar 31 2020 20:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 5 5 N 1.46498 * 109.47059 * 64.99625 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31611 * 120.00081 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99814 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47483 * 90.00178 * 10 8 6 12 12 H 1.48498 * 109.47011 * 210.00042 * 10 8 6 13 13 H 1.48502 * 109.47495 * 329.99664 * 10 8 6 14 14 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 15 15 N 1.46490 * 109.47559 * 295.00069 * 14 2 1 16 16 C 1.34773 * 120.00384 * 179.97438 * 15 14 2 17 17 O 1.21279 * 119.99608 * 0.02562 * 16 15 14 18 18 C 1.50699 * 120.00658 * 179.97438 * 16 15 14 19 19 H 1.09002 * 109.46570 * 60.00093 * 18 16 15 20 20 C 1.52995 * 109.47173 * 300.00961 * 18 16 15 21 21 C 1.52993 * 109.47630 * 180.02562 * 18 16 15 22 22 C 1.52996 * 109.47387 * 185.00087 * 21 18 16 23 23 C 1.50700 * 109.47184 * 180.02562 * 22 21 18 24 24 C 1.38269 * 119.98799 * 269.72665 * 23 22 21 25 25 C 1.38231 * 120.05113 * 179.72500 * 24 23 22 26 26 C 1.38221 * 120.02106 * 0.55080 * 25 24 23 27 27 C 1.38436 * 119.97496 * 359.72788 * 26 25 24 28 28 F 1.35100 * 120.02287 * 180.02562 * 27 26 25 29 29 C 1.38175 * 119.98801 * 90.00489 * 23 22 21 30 30 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 31 31 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 32 32 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 34 34 H 1.08994 * 109.46974 * 185.00040 * 4 2 1 35 35 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 36 36 H 0.97008 * 120.00329 * 179.97438 * 9 8 6 37 37 H 1.08998 * 109.46886 * 55.00501 * 14 2 1 38 38 H 1.09002 * 109.46923 * 174.99751 * 14 2 1 39 39 H 0.97002 * 120.00315 * 0.02562 * 15 14 2 40 40 H 1.09001 * 109.47384 * 59.99609 * 20 18 16 41 41 H 1.09006 * 109.46994 * 179.97438 * 20 18 16 42 42 H 1.08996 * 109.47085 * 299.99014 * 20 18 16 43 43 H 1.09001 * 109.47659 * 305.00819 * 21 18 16 44 44 H 1.09003 * 109.47154 * 65.00151 * 21 18 16 45 45 H 1.08994 * 109.47504 * 300.00292 * 22 21 18 46 46 H 1.08997 * 109.47073 * 60.00631 * 22 21 18 47 47 H 1.07995 * 119.97638 * 359.97438 * 24 23 22 48 48 H 1.07997 * 119.98758 * 180.27735 * 25 24 23 49 49 H 1.08000 * 120.01026 * 179.74700 * 26 25 24 50 50 H 1.08003 * 120.00837 * 359.97438 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.0064 -0.4178 -3.6852 7 1 2.5675 -1.3351 -3.7860 8 6 1.6441 0.3020 -4.8155 9 7 1.9838 -0.1336 -6.0100 10 14 0.6743 1.8890 -4.6410 11 1 1.6138 3.0324 -4.5180 12 1 -0.1830 2.0794 -5.8385 13 1 -0.1791 1.8169 -3.4278 14 6 2.0400 -0.7211 1.2494 15 7 1.6525 0.0355 2.4424 16 6 1.9956 -0.4133 3.6660 17 8 2.6256 -1.4434 3.7793 18 6 1.5975 0.3653 4.8933 19 1 0.5112 0.4443 4.9368 20 6 2.2084 1.7665 4.8287 21 6 2.1074 -0.3558 6.1425 22 6 1.5979 0.3658 7.3917 23 6 2.1007 -0.3442 8.6222 24 6 1.3507 -1.3574 9.1904 25 6 1.8134 -2.0134 10.3158 26 6 3.0211 -1.6493 10.8810 27 6 3.7700 -0.6312 10.3163 28 9 4.9508 -0.2749 10.8676 29 6 3.3082 0.0214 9.1856 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6054 -1.7199 -1.2950 34 1 3.1263 -0.7995 -1.2055 35 1 1.1488 0.8593 -2.3518 36 1 1.7304 0.3692 -6.7999 37 1 1.6054 -1.7197 1.2953 38 1 3.1263 -0.7993 1.2057 39 1 1.1483 0.8592 2.3518 40 1 1.8454 2.2806 3.9387 41 1 1.9201 2.3299 5.7163 42 1 3.2947 1.6876 4.7852 43 1 1.7438 -1.3834 6.1428 44 1 3.1974 -0.3562 6.1424 45 1 1.9615 1.3933 7.3915 46 1 0.5079 0.3661 7.3920 47 1 0.4047 -1.6392 8.7523 48 1 1.2289 -2.8076 10.7561 49 1 3.3804 -2.1592 11.7626 50 1 3.8919 0.8156 8.7439 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666666894.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:08 Heat of formation + Delta-G solvation = -95.460113 kcal Electronic energy + Delta-G solvation = -27563.584476 eV Core-core repulsion = 23503.478503 eV Total energy + Delta-G solvation = -4060.105973 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.91369 -41.06371 -40.08992 -38.42036 -36.57072 -36.01237 -34.22118 -33.22232 -32.24177 -31.47353 -29.28870 -27.88209 -27.25734 -26.08498 -24.24854 -23.68097 -23.16356 -21.87665 -21.59395 -20.69729 -19.58783 -18.45187 -17.70975 -17.39926 -17.25919 -17.07260 -16.67613 -16.61438 -16.47408 -16.04635 -15.68529 -15.32927 -15.06872 -14.92579 -14.70638 -14.61755 -14.32909 -14.05819 -13.84712 -13.74195 -13.60117 -13.53147 -13.23647 -13.19755 -12.87194 -12.70669 -12.47957 -12.37454 -12.18340 -12.13314 -12.09000 -12.00092 -11.76160 -11.68415 -11.66134 -11.51397 -10.98726 -10.72610 -10.05868 -9.89044 -9.60643 -9.30517 -8.02841 -5.37235 0.19760 0.26771 1.37505 1.42984 1.50349 1.69775 2.21265 2.49045 2.64251 3.27147 3.28370 3.55710 3.64913 3.73802 3.84104 3.93621 4.00699 4.03185 4.05997 4.13516 4.19389 4.31467 4.38369 4.46769 4.52719 4.55891 4.60933 4.69237 4.76469 4.80582 4.92690 4.97299 5.00368 5.02690 5.03973 5.08768 5.10821 5.14683 5.19120 5.29210 5.35537 5.39557 5.42834 5.45197 5.51483 5.61915 5.75012 5.97689 6.20476 6.60859 7.07734 7.31168 7.82373 8.03738 9.18761 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.031029 B = 0.001524 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.173233 B =18367.809707 C =18440.748878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 H 0.088 0.912 4 C 0.158 3.842 5 N -0.753 5.753 6 C -0.241 4.241 7 H 0.051 0.949 8 C -0.066 4.066 9 N -0.985 5.985 10 Si 0.960 3.040 11 H -0.277 1.277 12 H -0.296 1.296 13 H -0.245 1.245 14 C 0.136 3.864 15 N -0.713 5.713 16 C 0.508 3.492 17 O -0.591 6.591 18 C -0.100 4.100 19 H 0.129 0.871 20 C -0.147 4.147 21 C -0.090 4.090 22 C -0.076 4.076 23 C -0.057 4.057 24 C -0.131 4.131 25 C -0.091 4.091 26 C -0.169 4.169 27 C 0.071 3.929 28 F -0.154 7.154 29 C -0.163 4.163 30 H 0.082 0.918 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.023 0.977 34 H 0.021 0.979 35 H 0.369 0.631 36 H 0.258 0.742 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.415 0.585 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.046 0.954 43 H 0.057 0.943 44 H 0.049 0.951 45 H 0.092 0.908 46 H 0.100 0.900 47 H 0.150 0.850 48 H 0.157 0.843 49 H 0.145 0.855 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.148 5.023 38.360 39.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 H 0.107 0.893 4 C 0.031 3.969 5 N -0.399 5.399 6 C -0.372 4.372 7 H 0.069 0.931 8 C -0.257 4.257 9 N -0.635 5.635 10 Si 0.786 3.214 11 H -0.203 1.203 12 H -0.223 1.223 13 H -0.169 1.169 14 C 0.011 3.989 15 N -0.366 5.366 16 C 0.296 3.704 17 O -0.471 6.471 18 C -0.121 4.121 19 H 0.147 0.853 20 C -0.204 4.204 21 C -0.128 4.128 22 C -0.113 4.113 23 C -0.057 4.057 24 C -0.149 4.149 25 C -0.108 4.108 26 C -0.188 4.188 27 C 0.052 3.948 28 F -0.133 7.133 29 C -0.182 4.182 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.041 0.959 34 H 0.039 0.961 35 H 0.203 0.797 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.253 0.747 40 H 0.092 0.908 41 H 0.111 0.889 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.111 0.889 46 H 0.118 0.882 47 H 0.167 0.833 48 H 0.174 0.826 49 H 0.162 0.838 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.558 4.156 38.311 38.934 hybrid contribution 0.218 0.718 -0.746 1.058 sum -5.341 4.874 37.564 38.254 Atomic orbital electron populations 1.21799 0.93517 1.02278 1.02199 1.21389 0.97443 1.00393 0.92387 0.89343 1.20710 0.96837 0.94227 0.85090 1.42604 1.67507 1.27952 1.01836 1.19044 1.28212 1.05758 0.84162 0.93056 1.25586 1.02593 1.03038 0.94479 1.69903 1.53331 1.42293 0.98022 0.85345 0.78808 0.79448 0.77779 1.20287 1.22305 1.16883 1.21080 0.99294 0.95112 0.83411 1.45925 1.57536 1.28083 1.05053 1.21403 0.78173 0.85088 0.85693 1.90701 1.41989 1.26978 1.87412 1.21356 1.04078 0.96133 0.90577 0.85325 1.21889 1.00620 0.93386 1.04497 1.21287 1.00452 0.98998 0.92047 1.20732 1.02413 0.99189 0.88935 1.19974 0.93137 0.96092 0.96531 1.21514 1.01267 0.95816 0.96328 1.21367 0.94693 0.99409 0.95377 1.21409 0.96645 0.98084 1.02640 1.18056 0.82971 0.98340 0.95400 1.91466 1.45294 1.91395 1.85151 1.21237 0.98305 1.02563 0.96098 0.89938 0.93453 0.92959 0.95916 0.96065 0.79718 0.93308 0.92186 0.92678 0.74720 0.90832 0.88860 0.93479 0.92443 0.93229 0.88915 0.88163 0.83252 0.82552 0.83758 0.84330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.94 71.98 0.64 -2.57 16 2 C -0.10 -2.48 2.46 -10.79 -0.03 -2.51 16 3 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 4 C 0.16 5.85 5.65 86.38 0.49 6.34 16 5 N -0.75 -34.37 5.13 -343.46 -1.76 -36.13 16 6 C -0.24 -13.85 10.47 84.03 0.88 -12.97 16 7 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16 8 C -0.07 -3.86 5.50 84.86 0.47 -3.40 16 9 N -0.99 -63.43 13.97 21.65 0.30 -63.13 16 10 Si 0.96 44.34 27.74 68.60 1.90 46.25 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 12 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 13 H -0.24 -9.86 6.52 99.48 0.65 -9.21 16 14 C 0.14 3.25 5.06 86.38 0.44 3.69 16 15 N -0.71 -12.68 5.18 -463.08 -2.40 -15.07 16 16 C 0.51 10.38 7.15 87.66 0.63 11.01 16 17 O -0.59 -18.13 15.92 -3.03 -0.05 -18.18 16 18 C -0.10 -1.11 2.73 -11.54 -0.03 -1.14 16 19 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 20 C -0.15 -1.14 8.84 71.98 0.64 -0.50 16 21 C -0.09 -1.19 4.01 30.59 0.12 -1.06 16 22 C -0.08 -0.58 5.10 29.85 0.15 -0.43 16 23 C -0.06 -0.68 5.13 -19.87 -0.10 -0.78 16 24 C -0.13 -1.35 9.70 22.28 0.22 -1.14 16 25 C -0.09 -0.92 10.04 22.26 0.22 -0.70 16 26 C -0.17 -2.25 10.03 22.31 0.22 -2.02 16 27 C 0.07 1.20 7.30 22.37 0.16 1.37 16 28 F -0.15 -3.04 17.27 44.97 0.78 -2.26 16 29 C -0.16 -2.41 9.68 22.31 0.22 -2.19 16 30 H 0.08 1.27 7.18 -2.39 -0.02 1.26 16 31 H 0.05 1.26 7.18 -2.39 -0.02 1.25 16 32 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.37 15.58 4.71 -92.71 -0.44 15.14 16 36 H 0.26 15.77 8.31 -92.70 -0.77 15.00 16 37 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.42 4.70 7.07 -92.71 -0.66 4.05 16 40 H 0.07 0.43 7.57 -2.39 -0.02 0.41 16 41 H 0.09 0.33 6.57 -2.38 -0.02 0.32 16 42 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.06 0.97 7.96 -2.39 -0.02 0.95 16 44 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.09 0.49 6.51 -2.39 -0.02 0.47 16 46 H 0.10 0.38 8.08 -2.39 -0.02 0.36 16 47 H 0.15 0.89 8.06 -2.91 -0.02 0.86 16 48 H 0.16 0.75 8.06 -2.91 -0.02 0.72 16 49 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 50 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -78.31 408.44 3.90 -74.41 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -0.22 Total: 23.14 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: 5.34 Total: -9.02 kcal Atomic # 7 Polarization: -110.48 SS G_CDS: -3.86 Total: -114.33 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.05 Total: -18.18 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.78 Total: -2.26 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.90 Total: 46.25 kcal Total: -78.31 3.90 -74.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666666894.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.047 kcal (2) G-P(sol) polarization free energy of solvation -78.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds