Wall clock time and date at job start Tue Mar 31 2020 19:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.53120 * 2 1 4 4 C 1.53197 * 109.49483 * 120.08480 * 2 1 3 5 5 N 1.46927 * 108.77749 * 174.58487 * 4 2 1 6 6 C 1.34768 * 120.63448 * 126.36578 * 5 4 2 7 7 O 1.21278 * 120.00058 * 0.02562 * 6 5 4 8 8 C 1.50705 * 120.00401 * 180.02562 * 6 5 4 9 9 O 1.42897 * 109.47378 * 180.02562 * 8 6 5 10 10 C 1.42897 * 113.99932 * 179.97438 * 9 8 6 11 11 C 1.50704 * 109.46994 * 179.97438 * 10 9 8 12 12 C 1.35316 * 126.12643 * 0.03261 * 11 10 9 13 13 C 1.39871 * 107.91779 * 179.97438 * 12 11 10 14 14 N 1.30835 * 108.20589 * 359.97438 * 13 12 11 15 15 N 1.34951 * 126.12444 * 179.71405 * 11 10 9 16 16 C 1.46497 * 126.03686 * 0.03863 * 15 11 10 17 17 C 1.46929 * 118.73416 * 306.39107 * 5 4 2 18 18 C 1.53191 * 108.78221 * 53.60774 * 17 5 4 19 19 C 1.53040 * 109.49606 * 239.91759 * 2 1 3 20 20 H 1.09000 * 109.45235 * 58.67442 * 19 2 1 21 21 N 1.46504 * 109.46016 * 298.70585 * 19 2 1 22 22 C 1.36943 * 119.99781 * 154.93282 * 21 19 2 23 23 H 1.08002 * 119.99788 * 359.97438 * 22 21 19 24 24 C 1.38811 * 119.99622 * 180.27904 * 22 21 19 25 25 N 1.31622 * 119.99400 * 179.72313 * 24 22 21 26 26 Si 1.86800 * 120.00144 * 359.72086 * 24 22 21 27 27 H 1.48506 * 109.46719 * 90.00417 * 26 24 22 28 28 H 1.48501 * 109.46793 * 210.00071 * 26 24 22 29 29 H 1.48489 * 109.47333 * 330.00315 * 26 24 22 30 30 H 1.08994 * 109.47936 * 180.08205 * 1 2 3 31 31 H 1.09004 * 109.47143 * 300.08430 * 1 2 3 32 32 H 1.09003 * 109.47110 * 60.07522 * 1 2 3 33 33 H 1.08995 * 109.59115 * 54.79485 * 4 2 1 34 34 H 1.09002 * 109.70336 * 294.44065 * 4 2 1 35 35 H 1.09001 * 109.46535 * 300.00467 * 8 6 5 36 36 H 1.09001 * 109.46556 * 59.99822 * 8 6 5 37 37 H 1.08993 * 109.47318 * 300.00207 * 10 9 8 38 38 H 1.09007 * 109.46906 * 60.00456 * 10 9 8 39 39 H 1.08000 * 126.03785 * 359.97438 * 12 11 10 40 40 H 1.07999 * 125.89996 * 180.02562 * 13 12 11 41 41 H 1.09006 * 109.47231 * 90.00258 * 16 15 11 42 42 H 1.08999 * 109.46758 * 209.99939 * 16 15 11 43 43 H 1.08996 * 109.47271 * 330.00011 * 16 15 11 44 44 H 1.08999 * 109.58493 * 293.81342 * 17 5 4 45 45 H 1.09002 * 109.70301 * 173.46543 * 17 5 4 46 46 H 1.08994 * 109.50181 * 185.41706 * 18 17 5 47 47 H 1.09004 * 109.52406 * 65.32482 * 18 17 5 48 48 H 0.97000 * 120.00410 * 334.93608 * 21 19 2 49 49 H 0.97009 * 119.99492 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0412 -0.7239 1.2496 5 7 3.5045 -0.8293 1.1697 6 6 4.2811 -0.3859 2.1779 7 8 3.7732 0.1054 3.1636 8 6 5.7806 -0.5005 2.0807 9 8 6.3769 0.0337 3.2643 10 6 7.8045 -0.0274 3.2743 11 6 8.3235 0.5603 4.5614 12 6 7.5730 1.0711 5.5649 13 6 8.4405 1.5088 6.5710 14 7 9.6676 1.2689 6.1858 15 7 9.6196 0.6659 4.9222 16 6 10.7727 0.2298 4.1309 17 6 4.1051 -1.4269 -0.0307 18 6 3.5708 -0.6952 -1.2660 19 6 2.0407 -0.7231 -1.2483 20 1 1.6582 -0.2243 -2.1388 21 7 1.5782 -2.1131 -1.2308 22 6 1.4467 -2.8058 -2.4047 23 1 1.6835 -2.3273 -3.3435 24 6 1.0029 -4.1210 -2.3885 25 7 0.8713 -4.7850 -3.5173 26 14 0.5925 -4.9483 -0.7648 27 1 -0.8394 -4.7225 -0.4422 28 1 0.8515 -6.4066 -0.8730 29 1 1.4390 -4.3737 0.3114 30 1 -0.3635 -1.0276 0.0015 31 1 -0.3633 0.5152 0.8893 32 1 -0.3633 0.5127 -0.8907 33 1 1.6051 -1.7217 1.2980 34 1 1.7636 -0.1602 2.1403 35 1 6.0587 -1.5492 1.9757 36 1 6.1320 0.0573 1.2127 37 1 8.1243 -1.0662 3.1939 38 1 8.1984 0.5404 2.4313 39 1 6.4948 1.1303 5.5852 40 1 8.1478 1.9652 7.5051 41 1 11.1062 1.0484 3.4930 42 1 11.5823 -0.0628 4.7995 43 1 10.4877 -0.6206 3.5115 44 1 3.8374 -2.4820 -0.0867 45 1 5.1897 -1.3270 0.0124 46 1 3.9333 -1.1899 -2.1671 47 1 3.9159 0.3387 -1.2546 48 1 1.3650 -2.5428 -0.3876 49 1 0.5615 -5.7042 -3.5060 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667181998.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:39 Heat of formation + Delta-G solvation = 24.094732 kcal Electronic energy + Delta-G solvation = -29412.136881 eV Core-core repulsion = 25377.135156 eV Total energy + Delta-G solvation = -4035.001725 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.47306 -40.27942 -38.43929 -37.36249 -34.49118 -33.65495 -33.01191 -31.65055 -31.51272 -29.83291 -28.76676 -27.07706 -26.50813 -25.81306 -24.73148 -23.22463 -21.75679 -21.35780 -20.29995 -19.87247 -18.39282 -17.96197 -17.43442 -17.18239 -16.81759 -16.19860 -15.78435 -15.62740 -15.03000 -14.79663 -14.63929 -14.46220 -14.10685 -13.86438 -13.71234 -13.65997 -13.44606 -13.06352 -12.92598 -12.72079 -12.65900 -12.51749 -12.38632 -11.91581 -11.72149 -11.64101 -11.49564 -11.05181 -11.01644 -10.94602 -10.67961 -10.60903 -10.28446 -10.27129 -9.91853 -9.66491 -9.61246 -9.51134 -9.02252 -8.72551 -8.44418 -7.35044 -5.84914 -3.20529 1.54494 2.02595 2.61726 2.64163 2.70700 3.28914 3.32553 3.39520 3.56274 4.20067 4.27370 4.49652 4.50784 4.68100 4.69544 4.80109 4.82070 4.88622 4.96720 5.00319 5.00497 5.09243 5.15718 5.27487 5.40764 5.43463 5.53134 5.54261 5.56997 5.69507 5.79382 5.88064 5.97038 6.01941 6.14652 6.21506 6.32930 6.37475 6.45578 6.46769 6.57890 6.60820 6.69552 6.73155 6.82671 7.43174 7.48141 7.91288 8.20711 8.34176 9.12224 9.84851 10.04500 11.33364 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019022 B = 0.002333 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.655195 B =11997.764828 C =12467.241891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 H 0.072 0.928 4 C 0.120 3.880 5 N -0.603 5.603 6 C 0.516 3.484 7 O -0.528 6.528 8 C 0.047 3.953 9 O -0.350 6.350 10 C 0.130 3.870 11 C 0.073 3.927 12 C -0.239 4.239 13 C 0.044 3.956 14 N -0.295 5.295 15 N -0.374 5.374 16 C 0.098 3.902 17 C 0.110 3.890 18 C -0.150 4.150 19 C 0.184 3.816 20 H 0.061 0.939 21 N -0.744 5.744 22 C -0.242 4.242 23 H 0.091 0.909 24 C 0.007 3.993 25 N -0.932 5.932 26 Si 0.878 3.122 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.279 1.279 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.156 0.844 40 H 0.185 0.815 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.053 0.947 48 H 0.360 0.640 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.960 10.839 12.115 22.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.132 4.132 3 H 0.090 0.910 4 C -0.002 4.002 5 N -0.337 5.337 6 C 0.302 3.698 7 O -0.404 6.404 8 C -0.033 4.033 9 O -0.267 6.267 10 C 0.051 3.949 11 C -0.054 4.054 12 C -0.268 4.268 13 C -0.141 4.141 14 N -0.117 5.117 15 N -0.159 5.159 16 C -0.043 4.043 17 C -0.012 4.012 18 C -0.191 4.191 19 C 0.074 3.926 20 H 0.079 0.921 21 N -0.387 5.387 22 C -0.371 4.371 23 H 0.108 0.892 24 C -0.189 4.189 25 N -0.580 5.580 26 Si 0.709 3.291 27 H -0.210 1.210 28 H -0.218 1.218 29 H -0.205 1.205 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.174 0.826 40 H 0.202 0.798 41 H 0.094 0.906 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.101 0.899 45 H 0.089 0.911 46 H 0.099 0.901 47 H 0.072 0.928 48 H 0.194 0.806 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.920 11.128 12.766 23.939 hybrid contribution -0.899 -1.059 0.471 1.467 sum 16.021 10.069 13.237 23.093 Atomic orbital electron populations 1.21675 0.94112 1.02805 1.01033 1.21761 0.96600 0.99330 0.95477 0.90953 1.21654 0.78307 1.01155 0.99114 1.48071 1.07116 1.60398 1.18146 1.20002 0.88144 0.78563 0.83075 1.90704 1.75000 1.44001 1.30743 1.22301 0.92337 0.99937 0.88749 1.87993 1.17101 1.82917 1.38664 1.20582 0.82348 0.99412 0.92535 1.20506 0.84962 1.02303 0.97596 1.21391 1.01457 1.09576 0.94360 1.23933 0.89974 0.99947 1.00275 1.77374 1.22110 1.17746 0.94476 1.48386 1.04480 1.48243 1.14765 1.21874 0.87000 1.00452 0.94980 1.21790 0.96405 0.99001 0.84034 1.22508 1.00165 0.98985 0.97452 1.20190 0.90877 0.86199 0.95322 0.92074 1.42850 1.80692 1.09361 1.05837 1.19048 1.37558 0.94276 0.86259 0.89155 1.24646 1.01457 0.96789 0.96021 1.69695 1.52860 1.11051 1.24401 0.86666 0.78561 0.79282 0.84600 1.21021 1.21770 1.20488 0.91702 0.93442 0.92251 0.91430 0.89328 0.89940 0.89877 0.91218 0.91175 0.82596 0.79783 0.90641 0.89096 0.89615 0.89917 0.91124 0.90097 0.92824 0.80578 0.93046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.05 37.16 0.34 -1.65 16 2 C -0.11 -1.63 2.67 -90.50 -0.24 -1.87 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 4 C 0.12 1.82 5.42 -3.71 -0.02 1.80 16 5 N -0.60 -8.61 2.97 -172.76 -0.51 -9.13 16 6 C 0.52 7.50 7.77 -10.99 -0.09 7.42 16 7 O -0.53 -9.65 15.91 -14.35 -0.23 -9.88 16 8 C 0.05 0.49 4.77 36.01 0.17 0.66 16 9 O -0.35 -4.17 9.17 -55.14 -0.51 -4.67 16 10 C 0.13 1.11 5.90 36.01 0.21 1.32 16 11 C 0.07 0.78 6.91 -82.26 -0.57 0.21 16 12 C -0.24 -2.80 10.14 -40.01 -0.41 -3.21 16 13 C 0.04 0.47 12.03 -17.37 -0.21 0.26 16 14 N -0.30 -3.49 12.58 30.62 0.39 -3.11 16 15 N -0.37 -3.75 4.01 -63.88 -0.26 -4.00 16 16 C 0.10 0.53 11.27 59.85 0.67 1.21 16 17 C 0.11 1.46 6.08 -3.71 -0.02 1.44 16 18 C -0.15 -2.15 5.78 -26.61 -0.15 -2.30 16 19 C 0.18 3.08 2.53 -67.88 -0.17 2.91 16 20 H 0.06 1.08 8.08 -51.93 -0.42 0.67 16 21 N -0.74 -15.45 3.44 -53.38 -0.18 -15.63 16 22 C -0.24 -6.18 10.41 -15.06 -0.16 -6.34 16 23 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 24 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 25 N -0.93 -27.89 13.97 55.49 0.78 -27.12 16 26 Si 0.88 21.01 27.73 -169.99 -4.71 16.30 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H -0.28 -6.24 6.52 56.52 0.37 -5.87 16 30 H 0.06 1.05 7.54 -51.93 -0.39 0.66 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.11 6.64 -51.93 -0.34 0.77 16 34 H 0.09 1.37 7.00 -51.93 -0.36 1.01 16 35 H 0.08 0.70 7.94 -51.93 -0.41 0.28 16 36 H 0.08 0.67 7.70 -51.93 -0.40 0.27 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.16 1.92 7.85 -52.49 -0.41 1.51 16 40 H 0.19 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 0.27 7.79 -51.93 -0.40 -0.13 16 44 H 0.08 1.30 7.74 -51.93 -0.40 0.90 16 45 H 0.07 0.70 5.95 -51.93 -0.31 0.39 16 46 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.36 7.56 3.79 -40.82 -0.15 7.41 16 49 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 392.47 15.07 5.91 5.91 Total: -1.00 -34.51 392.47 -7.89 -42.40 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -7.83 Total: 6.97 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -0.74 Total: 1.95 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: 0.21 Total: -58.98 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.73 Total: -14.55 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.71 Total: 16.30 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.51 -7.89 -42.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667181998.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.498 kcal (2) G-P(sol) polarization free energy of solvation -34.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds