Wall clock time and date at job start Tue Mar 31 2020 19:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.53120 * 2 1 4 4 C 1.53197 * 109.49483 * 120.08480 * 2 1 3 5 5 N 1.46927 * 108.77749 * 174.58487 * 4 2 1 6 6 C 1.34768 * 120.63448 * 126.36578 * 5 4 2 7 7 O 1.21278 * 120.00058 * 0.02562 * 6 5 4 8 8 C 1.50705 * 120.00401 * 180.02562 * 6 5 4 9 9 O 1.42897 * 109.47378 * 180.02562 * 8 6 5 10 10 C 1.42897 * 113.99932 * 179.97438 * 9 8 6 11 11 C 1.50704 * 109.46994 * 179.97438 * 10 9 8 12 12 C 1.35316 * 126.12643 * 0.03261 * 11 10 9 13 13 C 1.39871 * 107.91779 * 179.97438 * 12 11 10 14 14 N 1.30835 * 108.20589 * 359.97438 * 13 12 11 15 15 N 1.34951 * 126.12444 * 179.71405 * 11 10 9 16 16 C 1.46497 * 126.03686 * 0.03863 * 15 11 10 17 17 C 1.46929 * 118.73416 * 306.39107 * 5 4 2 18 18 C 1.53191 * 108.78221 * 53.60774 * 17 5 4 19 19 C 1.53040 * 109.49606 * 239.91759 * 2 1 3 20 20 H 1.09000 * 109.45235 * 58.67442 * 19 2 1 21 21 N 1.46504 * 109.46016 * 298.70585 * 19 2 1 22 22 C 1.36943 * 119.99781 * 154.93282 * 21 19 2 23 23 H 1.08002 * 119.99788 * 359.97438 * 22 21 19 24 24 C 1.38811 * 119.99622 * 180.27904 * 22 21 19 25 25 N 1.31622 * 119.99400 * 179.72313 * 24 22 21 26 26 Si 1.86800 * 120.00144 * 359.72086 * 24 22 21 27 27 H 1.48506 * 109.46719 * 90.00417 * 26 24 22 28 28 H 1.48501 * 109.46793 * 210.00071 * 26 24 22 29 29 H 1.48489 * 109.47333 * 330.00315 * 26 24 22 30 30 H 1.08994 * 109.47936 * 180.08205 * 1 2 3 31 31 H 1.09004 * 109.47143 * 300.08430 * 1 2 3 32 32 H 1.09003 * 109.47110 * 60.07522 * 1 2 3 33 33 H 1.08995 * 109.59115 * 54.79485 * 4 2 1 34 34 H 1.09002 * 109.70336 * 294.44065 * 4 2 1 35 35 H 1.09001 * 109.46535 * 300.00467 * 8 6 5 36 36 H 1.09001 * 109.46556 * 59.99822 * 8 6 5 37 37 H 1.08993 * 109.47318 * 300.00207 * 10 9 8 38 38 H 1.09007 * 109.46906 * 60.00456 * 10 9 8 39 39 H 1.08000 * 126.03785 * 359.97438 * 12 11 10 40 40 H 1.07999 * 125.89996 * 180.02562 * 13 12 11 41 41 H 1.09006 * 109.47231 * 90.00258 * 16 15 11 42 42 H 1.08999 * 109.46758 * 209.99939 * 16 15 11 43 43 H 1.08996 * 109.47271 * 330.00011 * 16 15 11 44 44 H 1.08999 * 109.58493 * 293.81342 * 17 5 4 45 45 H 1.09002 * 109.70301 * 173.46543 * 17 5 4 46 46 H 1.08994 * 109.50181 * 185.41706 * 18 17 5 47 47 H 1.09004 * 109.52406 * 65.32482 * 18 17 5 48 48 H 0.97000 * 120.00410 * 334.93608 * 21 19 2 49 49 H 0.97009 * 119.99492 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0412 -0.7239 1.2496 5 7 3.5045 -0.8293 1.1697 6 6 4.2811 -0.3859 2.1779 7 8 3.7732 0.1054 3.1636 8 6 5.7806 -0.5005 2.0807 9 8 6.3769 0.0337 3.2643 10 6 7.8045 -0.0274 3.2743 11 6 8.3235 0.5603 4.5614 12 6 7.5730 1.0711 5.5649 13 6 8.4405 1.5088 6.5710 14 7 9.6676 1.2689 6.1858 15 7 9.6196 0.6659 4.9222 16 6 10.7727 0.2298 4.1309 17 6 4.1051 -1.4269 -0.0307 18 6 3.5708 -0.6952 -1.2660 19 6 2.0407 -0.7231 -1.2483 20 1 1.6582 -0.2243 -2.1388 21 7 1.5782 -2.1131 -1.2308 22 6 1.4467 -2.8058 -2.4047 23 1 1.6835 -2.3273 -3.3435 24 6 1.0029 -4.1210 -2.3885 25 7 0.8713 -4.7850 -3.5173 26 14 0.5925 -4.9483 -0.7648 27 1 -0.8394 -4.7225 -0.4422 28 1 0.8515 -6.4066 -0.8730 29 1 1.4390 -4.3737 0.3114 30 1 -0.3635 -1.0276 0.0015 31 1 -0.3633 0.5152 0.8893 32 1 -0.3633 0.5127 -0.8907 33 1 1.6051 -1.7217 1.2980 34 1 1.7636 -0.1602 2.1403 35 1 6.0587 -1.5492 1.9757 36 1 6.1320 0.0573 1.2127 37 1 8.1243 -1.0662 3.1939 38 1 8.1984 0.5404 2.4313 39 1 6.4948 1.1303 5.5852 40 1 8.1478 1.9652 7.5051 41 1 11.1062 1.0484 3.4930 42 1 11.5823 -0.0628 4.7995 43 1 10.4877 -0.6206 3.5115 44 1 3.8374 -2.4820 -0.0867 45 1 5.1897 -1.3270 0.0124 46 1 3.9333 -1.1899 -2.1671 47 1 3.9159 0.3387 -1.2546 48 1 1.3650 -2.5428 -0.3876 49 1 0.5615 -5.7042 -3.5060 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667181998.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:38 Heat of formation + Delta-G solvation = 1.445551 kcal Electronic energy + Delta-G solvation = -29413.119023 eV Core-core repulsion = 25377.135156 eV Total energy + Delta-G solvation = -4035.983867 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.20414 -41.40640 -39.49031 -38.38140 -35.94719 -34.54515 -34.28329 -33.15012 -32.29544 -31.43790 -29.68158 -27.67977 -27.44368 -26.84954 -25.88180 -24.93035 -23.01638 -22.11446 -21.17330 -20.83466 -19.87540 -19.57752 -18.43347 -17.96955 -17.54291 -17.13664 -16.69284 -16.61784 -16.48009 -16.06661 -15.64580 -15.53065 -15.29180 -15.06448 -14.87025 -14.58955 -14.47601 -14.41287 -13.85326 -13.70239 -13.59065 -13.32317 -13.26694 -13.21050 -13.03353 -12.90965 -12.68322 -12.56378 -12.45770 -12.03650 -11.95802 -11.91198 -11.72582 -11.65731 -11.18441 -10.98587 -10.95701 -10.72859 -10.19709 -9.65209 -9.49015 -9.21515 -7.96602 -5.27069 0.80734 1.35657 1.37500 1.39922 1.46485 1.55823 1.82617 1.84057 2.50595 2.75737 3.35810 3.44139 3.63813 3.64311 3.75106 3.83931 4.00038 4.02527 4.13488 4.18845 4.21305 4.29586 4.34439 4.36099 4.37366 4.45501 4.49509 4.64283 4.67030 4.70776 4.71613 4.79768 4.81785 4.96095 5.01946 5.13885 5.15570 5.20280 5.28234 5.31080 5.44751 5.61529 5.69209 5.86728 5.90494 6.08750 6.27608 6.41778 6.67678 7.13083 7.14609 7.91844 8.09592 9.25217 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019022 B = 0.002333 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.655195 B =11997.764828 C =12467.241891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.100 4.100 3 H 0.091 0.909 4 C 0.120 3.880 5 N -0.602 5.602 6 C 0.510 3.490 7 O -0.573 6.573 8 C 0.050 3.950 9 O -0.382 6.382 10 C 0.129 3.871 11 C 0.073 3.927 12 C -0.273 4.273 13 C 0.039 3.961 14 N -0.327 5.327 15 N -0.373 5.373 16 C 0.086 3.914 17 C 0.112 3.888 18 C -0.143 4.143 19 C 0.174 3.826 20 H 0.050 0.950 21 N -0.742 5.742 22 C -0.209 4.209 23 H 0.063 0.937 24 C -0.060 4.060 25 N -0.984 5.984 26 Si 0.939 3.061 27 H -0.286 1.286 28 H -0.301 1.301 29 H -0.255 1.255 30 H 0.042 0.958 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.141 0.859 40 H 0.205 0.795 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.113 0.887 44 H 0.058 0.942 45 H 0.116 0.884 46 H 0.068 0.932 47 H 0.082 0.918 48 H 0.361 0.639 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.217 11.685 12.690 25.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.120 4.120 3 H 0.109 0.891 4 C -0.003 4.003 5 N -0.335 5.335 6 C 0.299 3.701 7 O -0.453 6.453 8 C -0.029 4.029 9 O -0.300 6.300 10 C 0.051 3.949 11 C -0.055 4.055 12 C -0.302 4.302 13 C -0.145 4.145 14 N -0.149 5.149 15 N -0.158 5.158 16 C -0.053 4.053 17 C -0.009 4.009 18 C -0.184 4.184 19 C 0.066 3.934 20 H 0.068 0.932 21 N -0.386 5.386 22 C -0.340 4.340 23 H 0.081 0.919 24 C -0.252 4.252 25 N -0.636 5.636 26 Si 0.768 3.232 27 H -0.213 1.213 28 H -0.228 1.228 29 H -0.180 1.180 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.158 0.842 40 H 0.222 0.778 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.132 0.868 44 H 0.077 0.923 45 H 0.134 0.866 46 H 0.087 0.913 47 H 0.101 0.899 48 H 0.196 0.804 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 19.230 12.024 13.363 26.324 hybrid contribution -1.571 -1.200 0.242 1.992 sum 17.659 10.824 13.605 24.781 Atomic orbital electron populations 1.21663 0.94090 1.01645 1.02125 1.21662 0.96609 0.99762 0.93942 0.89105 1.21538 0.79471 1.00215 0.99050 1.48118 1.06634 1.60229 1.18553 1.20812 0.90037 0.77217 0.82004 1.90689 1.76204 1.45984 1.32394 1.22387 0.88957 1.02093 0.89461 1.87957 1.19057 1.83419 1.39594 1.20838 0.80719 1.01275 0.92054 1.20902 0.85184 1.01276 0.98138 1.21436 1.01075 1.11823 0.95849 1.24292 0.89634 0.99645 1.00966 1.77308 1.22590 1.19043 0.95945 1.48722 1.05353 1.47355 1.14361 1.22279 0.85895 1.02028 0.95128 1.21835 0.98966 0.97214 0.82924 1.22373 0.97545 1.00843 0.97603 1.20452 0.92909 0.83927 0.96075 0.93229 1.42819 1.80858 1.10777 1.04189 1.19001 1.34236 0.93882 0.86891 0.91887 1.25290 1.03111 0.97884 0.98880 1.69858 1.55725 1.11239 1.26765 0.85663 0.78372 0.77599 0.81572 1.21288 1.22848 1.17995 0.93923 0.91473 0.92105 0.92977 0.89714 0.87238 0.86462 0.88529 0.88273 0.84156 0.77823 0.89169 0.88718 0.86840 0.92311 0.86593 0.91302 0.89945 0.80438 0.93696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.05 71.98 0.65 -3.10 16 2 C -0.10 -2.72 2.67 -10.72 -0.03 -2.75 16 3 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 4 C 0.12 3.44 5.42 86.36 0.47 3.91 16 5 N -0.60 -15.46 2.97 -818.90 -2.43 -17.90 16 6 C 0.51 13.43 7.77 87.66 0.68 14.11 16 7 O -0.57 -20.29 15.91 16.01 0.25 -20.04 16 8 C 0.05 0.82 4.77 71.24 0.34 1.16 16 9 O -0.38 -7.94 9.17 -129.94 -1.19 -9.13 16 10 C 0.13 1.69 5.90 71.24 0.42 2.11 16 11 C 0.07 1.41 6.91 41.41 0.29 1.70 16 12 C -0.27 -6.34 10.14 21.99 0.22 -6.12 16 13 C 0.04 0.83 12.03 85.24 1.02 1.86 16 14 N -0.33 -7.46 12.58 -57.02 -0.72 -8.18 16 15 N -0.37 -6.72 4.01 -356.03 -1.43 -8.15 16 16 C 0.09 0.67 11.27 127.77 1.44 2.11 16 17 C 0.11 2.59 6.08 86.36 0.52 3.11 16 18 C -0.14 -3.67 5.78 30.67 0.18 -3.50 16 19 C 0.17 5.57 2.53 45.02 0.11 5.68 16 20 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 21 N -0.74 -30.24 3.44 -322.79 -1.11 -31.36 16 22 C -0.21 -10.76 10.41 84.03 0.87 -9.88 16 23 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 24 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16 25 N -0.98 -60.49 13.97 21.65 0.30 -60.18 16 26 Si 0.94 43.79 27.73 68.60 1.90 45.69 16 27 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 28 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 29 H -0.26 -10.72 6.52 99.48 0.65 -10.07 16 30 H 0.04 1.35 7.54 -2.39 -0.02 1.33 16 31 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.05 1.65 6.64 -2.39 -0.02 1.63 16 34 H 0.08 2.52 7.00 -2.39 -0.02 2.50 16 35 H 0.11 1.23 7.94 -2.39 -0.02 1.22 16 36 H 0.12 1.14 7.70 -2.39 -0.02 1.13 16 37 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 39 H 0.14 3.60 7.85 -2.91 -0.02 3.58 16 40 H 0.21 3.04 8.06 -2.91 -0.02 3.01 16 41 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 42 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.11 0.23 7.79 -2.39 -0.02 0.21 16 44 H 0.06 1.68 7.74 -2.39 -0.02 1.66 16 45 H 0.12 1.64 5.95 -2.39 -0.01 1.62 16 46 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.36 14.75 3.79 -92.71 -0.35 14.40 16 49 H 0.25 15.09 8.31 -92.70 -0.77 14.32 16 Total: -1.00 -78.68 392.47 3.78 -74.91 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: 0.54 Total: 26.83 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 7.66 Total: 7.51 kcal Atomic # 7 Polarization: -120.37 SS G_CDS: -5.39 Total: -125.76 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.94 Total: -29.17 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.90 Total: 45.69 kcal Total: -78.68 3.78 -74.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667181998.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.352 kcal (2) G-P(sol) polarization free energy of solvation -78.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds