Wall clock time and date at job start Tue Mar 31 2020 19:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.49415 * 2 1 4 4 C 1.53185 * 109.49962 * 239.93028 * 2 1 3 5 5 N 1.46930 * 108.77801 * 185.37991 * 4 2 1 6 6 C 1.34771 * 120.62913 * 233.58838 * 5 4 2 7 7 O 1.21277 * 120.00789 * 359.97438 * 6 5 4 8 8 C 1.50708 * 119.99782 * 179.97438 * 6 5 4 9 9 O 1.42891 * 109.47146 * 179.97438 * 8 6 5 10 10 C 1.42905 * 113.99971 * 179.97438 * 9 8 6 11 11 C 1.50703 * 109.47061 * 179.97438 * 10 9 8 12 12 C 1.35315 * 126.12762 * 0.19127 * 11 10 9 13 13 C 1.39868 * 107.91900 * 180.26298 * 12 11 10 14 14 N 1.30844 * 108.20218 * 359.73673 * 13 12 11 15 15 N 1.34949 * 126.12243 * 180.02562 * 11 10 9 16 16 C 1.46499 * 126.04009 * 359.97438 * 15 11 10 17 17 C 1.46930 * 118.73376 * 53.85907 * 5 4 2 18 18 C 1.53626 * 108.54451 * 306.09628 * 17 5 4 19 19 C 1.53039 * 109.24005 * 54.85848 * 18 17 5 20 20 H 1.09005 * 109.44716 * 178.49986 * 19 18 17 21 21 N 1.46498 * 109.46283 * 58.53115 * 19 18 17 22 22 C 1.36938 * 120.00001 * 84.92459 * 21 19 18 23 23 H 1.08004 * 119.99860 * 0.02562 * 22 21 19 24 24 C 1.38813 * 120.00018 * 180.02562 * 22 21 19 25 25 N 1.31621 * 120.00019 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99830 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.46623 * 90.00301 * 26 24 22 28 28 H 1.48508 * 109.47007 * 209.99871 * 26 24 22 29 29 H 1.48495 * 109.47391 * 330.00276 * 26 24 22 30 30 H 1.09000 * 109.46710 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47363 * 300.06667 * 1 2 3 32 32 H 1.09000 * 109.46718 * 60.07426 * 1 2 3 33 33 H 1.09004 * 109.58979 * 65.59477 * 4 2 1 34 34 H 1.09002 * 109.58705 * 305.16874 * 4 2 1 35 35 H 1.09005 * 109.47024 * 59.99727 * 8 6 5 36 36 H 1.09004 * 109.46680 * 300.00202 * 8 6 5 37 37 H 1.09005 * 109.46856 * 60.00157 * 10 9 8 38 38 H 1.08994 * 109.47159 * 300.00679 * 10 9 8 39 39 H 1.07994 * 126.03852 * 0.02562 * 12 11 10 40 40 H 1.07999 * 125.89841 * 179.75807 * 13 12 11 41 41 H 1.09002 * 109.47391 * 269.71886 * 16 15 11 42 42 H 1.09001 * 109.46813 * 149.71942 * 16 15 11 43 43 H 1.09004 * 109.47041 * 29.72069 * 16 15 11 44 44 H 1.09004 * 109.58504 * 65.93456 * 17 5 4 45 45 H 1.09001 * 109.58226 * 186.35178 * 17 5 4 46 46 H 1.09000 * 109.63343 * 294.86400 * 18 17 5 47 47 H 1.08998 * 109.42830 * 174.72601 * 18 17 5 48 48 H 0.97001 * 119.99814 * 264.93440 * 21 19 18 49 49 H 0.96996 * 119.99881 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7235 -1.2496 5 7 3.5048 -0.8281 -1.1701 6 6 4.2807 -0.3850 -2.1790 7 8 3.7724 0.1053 -3.1648 8 6 5.7804 -0.4988 -2.0821 9 8 6.3761 0.0348 -3.2662 10 6 7.8038 -0.0245 -3.2761 11 6 8.3220 0.5612 -4.5644 12 6 7.5711 1.0729 -5.5670 13 6 8.4377 1.5032 -6.5771 14 7 9.6651 1.2637 -6.1922 15 7 9.6182 0.6721 -4.9232 16 6 10.7722 0.2446 -4.1285 17 6 4.1058 -1.4305 0.0278 18 6 3.5715 -0.6940 1.2656 19 6 2.0415 -0.7229 1.2482 20 1 1.6590 -0.2243 2.1389 21 7 1.5796 -2.1131 1.2308 22 6 1.4502 -2.8063 2.4046 23 1 1.6881 -2.3281 3.3433 24 6 1.0131 -4.1237 2.3880 25 7 0.8882 -4.7899 3.5163 26 14 0.6022 -4.9511 0.7644 27 1 1.8184 -5.6085 0.2222 28 1 -0.4561 -5.9700 0.9819 29 1 0.1178 -3.9326 -0.2016 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5148 0.8893 32 1 -0.3633 0.5127 -0.8907 33 1 1.7634 -0.1578 -2.1389 34 1 1.6058 -1.7215 -1.2980 35 1 6.0591 -1.5473 -1.9764 36 1 6.1318 0.0598 -1.2145 37 1 8.1249 -1.0630 -3.1946 38 1 8.1970 0.5445 -2.4337 39 1 6.4931 1.1344 -5.5858 40 1 8.1443 1.9553 -7.5130 41 1 11.1035 1.0685 -3.4964 42 1 11.5827 -0.0509 -4.7947 43 1 10.4890 -0.6021 -3.5030 44 1 3.8351 -2.4851 0.0814 45 1 5.1903 -1.3315 -0.0184 46 1 3.9161 0.3400 1.2536 47 1 3.9345 -1.1886 2.1665 48 1 1.3657 -2.5425 0.3877 49 1 0.5831 -5.7106 3.5046 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667182000.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:47 Heat of formation + Delta-G solvation = 1.548251 kcal Electronic energy + Delta-G solvation = -29411.769206 eV Core-core repulsion = 25375.789793 eV Total energy + Delta-G solvation = -4035.979413 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.20351 -41.40008 -39.48485 -38.37836 -35.94594 -34.54385 -34.28236 -33.14035 -32.29384 -31.42090 -29.67998 -27.67974 -27.44453 -26.84595 -25.87721 -24.93308 -23.01613 -22.11403 -21.16915 -20.83301 -19.87854 -19.57805 -18.43037 -17.96810 -17.53971 -17.13340 -16.68779 -16.61542 -16.47939 -16.06932 -15.65360 -15.52310 -15.29266 -15.05338 -14.86558 -14.58603 -14.46078 -14.41172 -13.85113 -13.70904 -13.59344 -13.32257 -13.26554 -13.21011 -13.01865 -12.92991 -12.68718 -12.56238 -12.44432 -12.02935 -11.95411 -11.92427 -11.72505 -11.66458 -11.19558 -10.98323 -10.94149 -10.72651 -10.19590 -9.64971 -9.48978 -9.21540 -7.96506 -5.27015 0.80807 1.35750 1.38180 1.39476 1.46643 1.56083 1.82706 1.84098 2.50678 2.75938 3.35794 3.44352 3.63909 3.64392 3.75172 3.83967 4.00087 4.02822 4.13678 4.18997 4.21566 4.29441 4.34547 4.35823 4.37458 4.45546 4.49336 4.64329 4.67055 4.70780 4.71688 4.79842 4.81447 4.95902 5.01677 5.13767 5.15347 5.20239 5.28119 5.31402 5.44472 5.61546 5.69265 5.86746 5.90643 6.08851 6.27661 6.41882 6.67742 7.13343 7.14677 7.91911 8.09691 9.25312 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018991 B = 0.002334 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.060084 B =11991.434223 C =12461.602823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.100 4.100 3 H 0.091 0.909 4 C 0.120 3.880 5 N -0.602 5.602 6 C 0.510 3.490 7 O -0.573 6.573 8 C 0.050 3.950 9 O -0.382 6.382 10 C 0.129 3.871 11 C 0.073 3.927 12 C -0.272 4.272 13 C 0.039 3.961 14 N -0.327 5.327 15 N -0.373 5.373 16 C 0.086 3.914 17 C 0.112 3.888 18 C -0.143 4.143 19 C 0.174 3.826 20 H 0.049 0.951 21 N -0.742 5.742 22 C -0.209 4.209 23 H 0.063 0.937 24 C -0.060 4.060 25 N -0.984 5.984 26 Si 0.937 3.063 27 H -0.279 1.279 28 H -0.304 1.304 29 H -0.258 1.258 30 H 0.041 0.959 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.141 0.859 40 H 0.205 0.795 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.113 0.887 44 H 0.060 0.940 45 H 0.116 0.884 46 H 0.082 0.918 47 H 0.068 0.932 48 H 0.362 0.638 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.158 11.716 -12.684 25.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.120 4.120 3 H 0.109 0.891 4 C -0.002 4.002 5 N -0.335 5.335 6 C 0.299 3.701 7 O -0.453 6.453 8 C -0.029 4.029 9 O -0.300 6.300 10 C 0.051 3.949 11 C -0.055 4.055 12 C -0.302 4.302 13 C -0.145 4.145 14 N -0.149 5.149 15 N -0.158 5.158 16 C -0.053 4.053 17 C -0.010 4.010 18 C -0.183 4.183 19 C 0.066 3.934 20 H 0.067 0.933 21 N -0.386 5.386 22 C -0.340 4.340 23 H 0.081 0.919 24 C -0.251 4.251 25 N -0.636 5.636 26 Si 0.766 3.234 27 H -0.206 1.206 28 H -0.231 1.231 29 H -0.183 1.183 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.158 0.842 40 H 0.222 0.778 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.132 0.868 44 H 0.078 0.922 45 H 0.134 0.866 46 H 0.101 0.899 47 H 0.087 0.913 48 H 0.196 0.804 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 19.165 12.059 -13.357 26.289 hybrid contribution -1.572 -1.202 -0.243 1.994 sum 17.593 10.857 -13.600 24.746 Atomic orbital electron populations 1.21663 0.94170 1.01592 1.02083 1.21662 0.96550 0.99778 0.94000 0.89107 1.21531 0.79479 1.00214 0.99023 1.48129 1.06610 1.60148 1.18662 1.20813 0.90036 0.77225 0.81985 1.90690 1.76182 1.46022 1.32374 1.22392 0.88965 1.02115 0.89445 1.87957 1.19052 1.83480 1.39543 1.20838 0.80726 1.01294 0.92028 1.20903 0.85175 1.01231 0.98193 1.21434 1.01086 1.11775 0.95884 1.24293 0.89645 0.99635 1.00970 1.77310 1.22586 1.19393 0.95608 1.48720 1.05331 1.47675 1.14060 1.22281 0.85862 1.02154 0.95036 1.21941 0.98968 0.97146 0.82913 1.22443 0.97448 1.00801 0.97601 1.20447 0.92959 0.83913 0.96032 0.93303 1.42820 1.80752 1.10828 1.04244 1.19000 1.34423 0.93648 0.86944 0.91894 1.25287 1.03136 0.97836 0.98885 1.69852 1.55916 1.11019 1.26807 0.85680 0.77668 0.78597 0.81408 1.20569 1.23123 1.18292 0.94010 0.92100 0.91527 0.89742 0.92951 0.87215 0.86460 0.88535 0.88266 0.84154 0.77826 0.89151 0.88732 0.86842 0.92192 0.86571 0.89922 0.91332 0.80434 0.93695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 9.06 71.98 0.65 -3.14 16 2 C -0.10 -2.73 2.67 -10.72 -0.03 -2.76 16 3 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 4 C 0.12 3.45 5.42 86.36 0.47 3.91 16 5 N -0.60 -15.35 2.97 -818.04 -2.43 -17.78 16 6 C 0.51 13.36 7.78 87.66 0.68 14.04 16 7 O -0.57 -20.24 15.91 16.02 0.25 -19.99 16 8 C 0.05 0.81 4.76 71.24 0.34 1.15 16 9 O -0.38 -7.92 9.17 -129.94 -1.19 -9.11 16 10 C 0.13 1.68 5.89 71.24 0.42 2.10 16 11 C 0.07 1.41 6.91 41.41 0.29 1.70 16 12 C -0.27 -6.33 10.14 21.99 0.22 -6.11 16 13 C 0.04 0.83 12.03 85.23 1.02 1.86 16 14 N -0.33 -7.46 12.58 -57.02 -0.72 -8.18 16 15 N -0.37 -6.72 4.01 -356.02 -1.43 -8.15 16 16 C 0.09 0.67 11.28 127.77 1.44 2.11 16 17 C 0.11 2.56 6.11 86.51 0.53 3.09 16 18 C -0.14 -3.64 5.80 30.82 0.18 -3.47 16 19 C 0.17 5.58 2.53 45.02 0.11 5.69 16 20 H 0.05 1.69 8.08 -2.38 -0.02 1.67 16 21 N -0.74 -30.25 3.44 -322.80 -1.11 -31.36 16 22 C -0.21 -10.76 10.41 84.03 0.87 -9.89 16 23 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 24 C -0.06 -3.35 5.50 84.86 0.47 -2.88 16 25 N -0.98 -60.49 13.97 21.65 0.30 -60.18 16 26 Si 0.94 43.71 27.74 68.60 1.90 45.61 16 27 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 28 H -0.30 -14.76 7.11 99.48 0.71 -14.06 16 29 H -0.26 -11.00 6.52 99.48 0.65 -10.36 16 30 H 0.04 1.34 7.54 -2.39 -0.02 1.33 16 31 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.08 2.51 7.01 -2.39 -0.02 2.50 16 34 H 0.05 1.66 6.64 -2.39 -0.02 1.64 16 35 H 0.11 1.22 7.93 -2.38 -0.02 1.20 16 36 H 0.12 1.13 7.70 -2.39 -0.02 1.12 16 37 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.14 3.60 7.85 -2.91 -0.02 3.58 16 40 H 0.21 3.04 8.06 -2.91 -0.02 3.01 16 41 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.11 0.23 7.78 -2.38 -0.02 0.21 16 44 H 0.06 1.69 7.74 -2.39 -0.02 1.67 16 45 H 0.12 1.62 5.93 -2.39 -0.01 1.60 16 46 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.36 14.76 3.79 -92.71 -0.35 14.41 16 49 H 0.25 15.10 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -78.62 392.47 3.79 -74.82 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 0.54 Total: 26.91 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 7.67 Total: 7.41 kcal Atomic # 7 Polarization: -120.27 SS G_CDS: -5.38 Total: -125.66 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.94 Total: -29.10 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.90 Total: 45.61 kcal Total: -78.62 3.79 -74.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667182000.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.372 kcal (2) G-P(sol) polarization free energy of solvation -78.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds