Wall clock time and date at job start Tue Mar 31 2020 20:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.47545 * 2 1 4 4 C 1.53001 * 109.47085 * 239.99897 * 2 1 3 5 5 C 1.52998 * 109.46869 * 65.00031 * 4 2 1 6 6 C 1.50710 * 109.47098 * 180.02562 * 5 4 2 7 7 C 1.38271 * 119.98444 * 269.73020 * 6 5 4 8 8 C 1.38218 * 120.04982 * 179.72185 * 7 6 5 9 9 C 1.38219 * 120.02544 * 0.55174 * 8 7 6 10 10 C 1.38443 * 119.97496 * 359.71609 * 9 8 7 11 11 F 1.35091 * 120.02722 * 180.02562 * 10 9 8 12 12 C 1.38173 * 119.98786 * 89.99599 * 6 5 4 13 13 C 1.50700 * 109.46977 * 120.00049 * 2 1 3 14 14 O 1.21282 * 120.00035 * 119.99736 * 13 2 1 15 15 N 1.34772 * 119.99945 * 299.99860 * 13 2 1 16 16 C 1.46499 * 120.00454 * 0.02562 * 15 13 2 17 17 C 1.46507 * 119.99969 * 180.02562 * 15 13 2 18 18 C 1.52999 * 109.47174 * 90.00093 * 17 15 13 19 19 N 1.46498 * 109.46983 * 180.02562 * 18 17 15 20 20 C 1.46495 * 120.00459 * 90.00035 * 19 18 17 21 21 C 1.36936 * 119.99609 * 269.99448 * 19 18 17 22 22 H 1.08005 * 120.00317 * 23.04752 * 21 19 18 23 23 C 1.38815 * 120.00227 * 203.04441 * 21 19 18 24 24 N 1.31621 * 119.99436 * 12.93361 * 23 21 19 25 25 Si 1.86793 * 120.00208 * 192.92738 * 23 21 19 26 26 H 1.48498 * 109.46977 * 60.00510 * 25 23 21 27 27 H 1.48507 * 109.47142 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.47277 * 300.00133 * 25 23 21 29 29 H 1.09000 * 109.47032 * 59.99955 * 1 2 3 30 30 H 1.09003 * 109.47127 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46849 * 299.99916 * 1 2 3 32 32 H 1.09008 * 109.46987 * 305.00197 * 4 2 1 33 33 H 1.08995 * 109.47354 * 185.00211 * 4 2 1 34 34 H 1.08999 * 109.47202 * 299.99728 * 5 4 2 35 35 H 1.08999 * 109.47357 * 60.00315 * 5 4 2 36 36 H 1.08003 * 119.97240 * 359.97438 * 7 6 5 37 37 H 1.08002 * 119.99200 * 180.27045 * 8 7 6 38 38 H 1.08004 * 120.01537 * 179.74875 * 9 8 7 39 39 H 1.07996 * 120.01172 * 359.97438 * 12 6 5 40 40 H 1.08998 * 109.46817 * 89.99827 * 16 15 13 41 41 H 1.08990 * 109.47238 * 210.00284 * 16 15 13 42 42 H 1.08998 * 109.46666 * 329.99982 * 16 15 13 43 43 H 1.09000 * 109.46957 * 209.99940 * 17 15 13 44 44 H 1.09000 * 109.47204 * 330.00161 * 17 15 13 45 45 H 1.09008 * 109.46940 * 300.00077 * 18 17 15 46 46 H 1.08994 * 109.47422 * 59.99955 * 18 17 15 47 47 H 1.09000 * 109.47756 * 95.11729 * 20 19 18 48 48 H 1.09003 * 109.47231 * 215.12044 * 20 19 18 49 49 H 1.09003 * 109.47352 * 335.12058 * 20 19 18 50 50 H 0.97009 * 119.99858 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6352 0.0689 -2.4953 6 6 2.1370 -0.6418 -3.7259 7 6 3.3885 -0.3448 -4.2334 8 6 3.8523 -1.0000 -5.3586 9 6 3.0609 -1.9447 -5.9844 10 6 1.8055 -2.2390 -5.4803 11 9 1.0314 -3.1625 -6.0908 12 6 1.3442 -1.5860 -4.3496 13 6 2.0323 -0.7104 1.2305 14 8 2.7295 -1.6965 1.1192 15 7 1.7067 -0.2500 2.4545 16 6 0.8641 0.9409 2.5890 17 6 2.1955 -0.9403 3.6507 18 6 3.5431 -0.3473 4.0669 19 7 4.0321 -1.0380 5.2627 20 6 4.8749 -2.2287 5.1278 21 6 3.7015 -0.5706 6.5066 22 1 2.8205 0.0404 6.6374 23 6 4.4985 -0.8820 7.5997 24 7 5.6937 -1.4018 7.4157 25 14 3.8751 -0.5633 9.3314 26 1 2.6315 -1.3419 9.5608 27 1 4.9082 -0.9789 10.3138 28 1 3.5901 0.8847 9.4962 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6053 -1.7199 -1.2951 33 1 3.1263 -0.7995 -1.2056 34 1 0.5489 0.1471 -2.5389 35 1 2.0699 1.0674 -2.4494 36 1 4.0056 0.3967 -3.7479 37 1 4.8317 -0.7704 -5.7517 38 1 3.4220 -2.4537 -6.8659 39 1 0.3652 -1.8150 -3.9552 40 1 -0.1837 0.6425 2.6225 41 1 1.1218 1.4664 3.5084 42 1 1.0272 1.5995 1.7361 43 1 1.4776 -0.8150 4.4613 44 1 2.3170 -2.0015 3.4337 45 1 4.2611 -0.4725 3.2563 46 1 3.4217 0.7139 4.2840 47 1 5.9243 -1.9396 5.1856 48 1 4.6461 -2.9287 5.9314 49 1 4.6814 -2.7038 4.1660 50 1 6.2509 -1.6191 8.1795 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667664028.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:03 Heat of formation + Delta-G solvation = -40.931493 kcal Electronic energy + Delta-G solvation = -28488.645521 eV Core-core repulsion = 24430.904086 eV Total energy + Delta-G solvation = -4057.741435 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.17509 -40.14389 -39.42149 -36.31155 -35.62968 -34.91557 -32.65934 -31.36230 -30.86299 -29.06991 -27.99744 -26.74845 -25.80670 -25.31090 -23.87785 -23.05745 -22.16805 -21.05640 -20.29787 -18.83094 -17.65289 -16.86623 -16.71942 -16.58752 -16.48050 -16.04915 -15.86605 -15.43275 -14.81367 -14.77745 -14.33887 -14.03320 -13.87696 -13.69924 -13.52884 -13.19500 -13.12489 -12.85853 -12.76073 -12.62746 -12.42276 -12.28761 -12.11079 -11.91942 -11.77902 -11.50682 -11.38669 -11.24570 -10.95921 -10.83556 -10.82247 -10.80464 -10.50301 -10.18074 -9.88799 -9.79156 -9.46062 -9.26059 -8.96291 -8.65798 -8.34422 -6.69169 -5.69060 -3.17130 0.83320 0.87668 2.85190 3.17526 3.30226 3.38988 3.44498 3.45417 3.90548 4.28807 4.40307 4.46864 4.53078 4.65187 4.75261 4.79120 4.88633 4.99180 5.04580 5.09978 5.21628 5.28766 5.34342 5.39783 5.45969 5.55647 5.56746 5.60624 5.68885 5.72907 5.74177 5.77963 5.80893 5.83428 5.96604 6.04850 6.17291 6.19550 6.23295 6.33266 6.57285 6.58946 6.70059 6.91357 7.00692 7.44413 7.65768 7.77464 7.83487 8.40046 8.45264 9.26170 9.89851 10.40156 11.35234 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.021976 B = 0.001901 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.825050 B =14723.040838 C =15344.006511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.109 4.109 3 H 0.096 0.904 4 C -0.094 4.094 5 C -0.084 4.084 6 C -0.047 4.047 7 C -0.127 4.127 8 C -0.088 4.088 9 C -0.162 4.162 10 C 0.099 3.901 11 F -0.142 7.142 12 C -0.152 4.152 13 C 0.511 3.489 14 O -0.538 6.538 15 N -0.611 5.611 16 C 0.077 3.923 17 C 0.092 3.908 18 C 0.144 3.856 19 N -0.600 5.600 20 C 0.162 3.838 21 C -0.258 4.258 22 H 0.067 0.933 23 C 0.001 3.999 24 N -0.906 5.906 25 Si 0.906 3.094 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.283 1.283 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.056 0.944 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.037 0.963 46 H 0.044 0.956 47 H 0.031 0.969 48 H 0.040 0.960 49 H 0.001 0.999 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.715 5.627 -25.359 28.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.131 4.131 3 H 0.114 0.886 4 C -0.132 4.132 5 C -0.121 4.121 6 C -0.048 4.048 7 C -0.145 4.145 8 C -0.106 4.106 9 C -0.181 4.181 10 C 0.079 3.921 11 F -0.120 7.120 12 C -0.171 4.171 13 C 0.299 3.701 14 O -0.415 6.415 15 N -0.344 5.344 16 C -0.067 4.067 17 C -0.032 4.032 18 C 0.015 3.985 19 N -0.323 5.323 20 C 0.017 3.983 21 C -0.387 4.387 22 H 0.084 0.916 23 C -0.197 4.197 24 N -0.551 5.551 25 Si 0.735 3.265 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.210 1.210 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.056 0.944 46 H 0.062 0.938 47 H 0.049 0.951 48 H 0.059 0.941 49 H 0.020 0.980 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.215 4.993 -25.273 27.713 hybrid contribution -0.439 -0.012 0.954 1.050 sum -10.654 4.981 -24.318 27.013 Atomic orbital electron populations 1.22105 0.93240 1.03043 1.03197 1.21291 0.97508 1.00799 0.93454 0.88604 1.21372 1.02340 0.98908 0.90570 1.20759 1.01577 0.98689 0.91092 1.19764 0.93820 0.95312 0.95867 1.21181 0.95728 1.00902 0.96685 1.21025 0.99474 0.94928 0.95176 1.21148 0.93582 1.01048 1.02294 1.17718 0.90166 0.90419 0.93757 1.91498 1.74498 1.63736 1.82302 1.21049 1.01741 0.98499 0.95781 1.20564 0.80363 0.84758 0.84459 1.90709 1.37859 1.26517 1.86387 1.47966 1.50821 1.29077 1.06554 1.21930 0.94205 0.87510 1.03019 1.22513 0.98607 0.97763 0.84340 1.20965 0.92494 0.95244 0.89759 1.43835 1.58771 1.28880 1.00821 1.20803 0.94642 0.87622 0.95198 1.19118 1.05449 1.29943 0.84212 0.91569 1.25050 0.95170 1.01049 0.98446 1.70078 1.08182 1.47533 1.29273 0.86328 0.77793 0.77962 0.84370 1.21092 1.21636 1.20970 0.91522 0.92177 0.90917 0.91037 0.90637 0.90342 0.90361 0.85177 0.84976 0.84928 0.84783 0.92604 0.90771 0.91222 0.90923 0.90642 0.94434 0.93759 0.95117 0.94143 0.98017 0.93691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 8.58 37.16 0.32 -0.88 16 2 C -0.11 -1.07 1.92 -91.77 -0.18 -1.24 16 3 H 0.10 0.77 7.40 -51.93 -0.38 0.39 16 4 C -0.09 -0.92 4.01 -26.73 -0.11 -1.03 16 5 C -0.08 -0.59 5.10 -27.88 -0.14 -0.73 16 6 C -0.05 -0.39 5.13 -104.63 -0.54 -0.93 16 7 C -0.13 -0.98 9.70 -39.58 -0.38 -1.37 16 8 C -0.09 -0.64 10.04 -39.60 -0.40 -1.04 16 9 C -0.16 -1.32 10.03 -39.51 -0.40 -1.72 16 10 C 0.10 0.94 7.30 -39.42 -0.29 0.65 16 11 F -0.14 -1.48 17.27 2.25 0.04 -1.44 16 12 C -0.15 -1.35 9.68 -39.52 -0.38 -1.73 16 13 C 0.51 7.60 7.08 -10.99 -0.08 7.52 16 14 O -0.54 -10.41 15.50 5.56 0.09 -10.33 16 15 N -0.61 -8.88 2.87 -181.57 -0.52 -9.40 16 16 C 0.08 0.77 8.80 59.85 0.53 1.30 16 17 C 0.09 1.70 5.73 -4.04 -0.02 1.68 16 18 C 0.14 3.11 5.97 -4.04 -0.02 3.08 16 19 N -0.60 -15.65 2.92 -181.12 -0.53 -16.18 16 20 C 0.16 4.25 8.98 59.84 0.54 4.79 16 21 C -0.26 -7.13 9.65 -15.06 -0.15 -7.27 16 22 H 0.07 1.75 7.86 -52.48 -0.41 1.34 16 23 C 0.00 0.04 5.10 -17.43 -0.09 -0.05 16 24 N -0.91 -26.98 10.71 55.49 0.59 -26.39 16 25 Si 0.91 21.89 29.57 -169.99 -5.03 16.87 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 29 H 0.07 0.37 6.56 -51.93 -0.34 0.03 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.51 4.53 -51.93 -0.24 0.27 16 32 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 33 H 0.07 0.88 7.95 -51.93 -0.41 0.46 16 34 H 0.08 0.46 6.51 -51.93 -0.34 0.12 16 35 H 0.08 0.46 8.08 -51.93 -0.42 0.04 16 36 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 37 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 38 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 39 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.06 0.47 6.95 -51.93 -0.36 0.11 16 41 H 0.07 0.77 8.07 -51.93 -0.42 0.36 16 42 H 0.07 0.53 6.01 -51.93 -0.31 0.22 16 43 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 44 H 0.08 1.57 7.42 -51.93 -0.39 1.18 16 45 H 0.04 0.84 8.07 -51.92 -0.42 0.42 16 46 H 0.04 0.93 8.04 -51.93 -0.42 0.51 16 47 H 0.03 0.86 7.34 -51.93 -0.38 0.48 16 48 H 0.04 1.11 7.34 -51.93 -0.38 0.73 16 49 H 0.00 0.03 8.03 -51.93 -0.42 -0.39 16 50 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 404.05 15.07 6.09 6.09 Total: -1.00 -33.70 404.05 -9.19 -42.89 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -8.13 Total: -3.12 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -1.79 Total: 1.02 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.46 Total: -51.97 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.70 -9.19 -42.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667664028.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.954 kcal (2) G-P(sol) polarization free energy of solvation -33.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds