Wall clock time and date at job start Tue Mar 31 2020 20:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.47545 * 2 1 4 4 C 1.53001 * 109.47085 * 239.99897 * 2 1 3 5 5 C 1.52998 * 109.46869 * 65.00031 * 4 2 1 6 6 C 1.50710 * 109.47098 * 180.02562 * 5 4 2 7 7 C 1.38271 * 119.98444 * 269.73020 * 6 5 4 8 8 C 1.38218 * 120.04982 * 179.72185 * 7 6 5 9 9 C 1.38219 * 120.02544 * 0.55174 * 8 7 6 10 10 C 1.38443 * 119.97496 * 359.71609 * 9 8 7 11 11 F 1.35091 * 120.02722 * 180.02562 * 10 9 8 12 12 C 1.38173 * 119.98786 * 89.99599 * 6 5 4 13 13 C 1.50700 * 109.46977 * 120.00049 * 2 1 3 14 14 O 1.21282 * 120.00035 * 119.99736 * 13 2 1 15 15 N 1.34772 * 119.99945 * 299.99860 * 13 2 1 16 16 C 1.46499 * 120.00454 * 0.02562 * 15 13 2 17 17 C 1.46507 * 119.99969 * 180.02562 * 15 13 2 18 18 C 1.52999 * 109.47174 * 90.00093 * 17 15 13 19 19 N 1.46498 * 109.46983 * 180.02562 * 18 17 15 20 20 C 1.46495 * 120.00459 * 90.00035 * 19 18 17 21 21 C 1.36936 * 119.99609 * 269.99448 * 19 18 17 22 22 H 1.08005 * 120.00317 * 23.04752 * 21 19 18 23 23 C 1.38815 * 120.00227 * 203.04441 * 21 19 18 24 24 N 1.31621 * 119.99436 * 12.93361 * 23 21 19 25 25 Si 1.86793 * 120.00208 * 192.92738 * 23 21 19 26 26 H 1.48498 * 109.46977 * 60.00510 * 25 23 21 27 27 H 1.48507 * 109.47142 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.47277 * 300.00133 * 25 23 21 29 29 H 1.09000 * 109.47032 * 59.99955 * 1 2 3 30 30 H 1.09003 * 109.47127 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46849 * 299.99916 * 1 2 3 32 32 H 1.09008 * 109.46987 * 305.00197 * 4 2 1 33 33 H 1.08995 * 109.47354 * 185.00211 * 4 2 1 34 34 H 1.08999 * 109.47202 * 299.99728 * 5 4 2 35 35 H 1.08999 * 109.47357 * 60.00315 * 5 4 2 36 36 H 1.08003 * 119.97240 * 359.97438 * 7 6 5 37 37 H 1.08002 * 119.99200 * 180.27045 * 8 7 6 38 38 H 1.08004 * 120.01537 * 179.74875 * 9 8 7 39 39 H 1.07996 * 120.01172 * 359.97438 * 12 6 5 40 40 H 1.08998 * 109.46817 * 89.99827 * 16 15 13 41 41 H 1.08990 * 109.47238 * 210.00284 * 16 15 13 42 42 H 1.08998 * 109.46666 * 329.99982 * 16 15 13 43 43 H 1.09000 * 109.46957 * 209.99940 * 17 15 13 44 44 H 1.09000 * 109.47204 * 330.00161 * 17 15 13 45 45 H 1.09008 * 109.46940 * 300.00077 * 18 17 15 46 46 H 1.08994 * 109.47422 * 59.99955 * 18 17 15 47 47 H 1.09000 * 109.47756 * 95.11729 * 20 19 18 48 48 H 1.09003 * 109.47231 * 215.12044 * 20 19 18 49 49 H 1.09003 * 109.47352 * 335.12058 * 20 19 18 50 50 H 0.97009 * 119.99858 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6352 0.0689 -2.4953 6 6 2.1370 -0.6418 -3.7259 7 6 3.3885 -0.3448 -4.2334 8 6 3.8523 -1.0000 -5.3586 9 6 3.0609 -1.9447 -5.9844 10 6 1.8055 -2.2390 -5.4803 11 9 1.0314 -3.1625 -6.0908 12 6 1.3442 -1.5860 -4.3496 13 6 2.0323 -0.7104 1.2305 14 8 2.7295 -1.6965 1.1192 15 7 1.7067 -0.2500 2.4545 16 6 0.8641 0.9409 2.5890 17 6 2.1955 -0.9403 3.6507 18 6 3.5431 -0.3473 4.0669 19 7 4.0321 -1.0380 5.2627 20 6 4.8749 -2.2287 5.1278 21 6 3.7015 -0.5706 6.5066 22 1 2.8205 0.0404 6.6374 23 6 4.4985 -0.8820 7.5997 24 7 5.6937 -1.4018 7.4157 25 14 3.8751 -0.5633 9.3314 26 1 2.6315 -1.3419 9.5608 27 1 4.9082 -0.9789 10.3138 28 1 3.5901 0.8847 9.4962 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6053 -1.7199 -1.2951 33 1 3.1263 -0.7995 -1.2056 34 1 0.5489 0.1471 -2.5389 35 1 2.0699 1.0674 -2.4494 36 1 4.0056 0.3967 -3.7479 37 1 4.8317 -0.7704 -5.7517 38 1 3.4220 -2.4537 -6.8659 39 1 0.3652 -1.8150 -3.9552 40 1 -0.1837 0.6425 2.6225 41 1 1.1218 1.4664 3.5084 42 1 1.0272 1.5995 1.7361 43 1 1.4776 -0.8150 4.4613 44 1 2.3170 -2.0015 3.4337 45 1 4.2611 -0.4725 3.2563 46 1 3.4217 0.7139 4.2840 47 1 5.9243 -1.9396 5.1856 48 1 4.6461 -2.9287 5.9314 49 1 4.6814 -2.7038 4.1660 50 1 6.2509 -1.6191 8.1795 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667664028.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:02 Heat of formation + Delta-G solvation = -58.899673 kcal Electronic energy + Delta-G solvation = -28489.424679 eV Core-core repulsion = 24430.904086 eV Total energy + Delta-G solvation = -4058.520594 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.91058 -41.22088 -40.09160 -37.91709 -36.58133 -36.41348 -33.71064 -33.00798 -31.48426 -30.38580 -28.97205 -28.01047 -27.65871 -26.20929 -25.29218 -23.69931 -23.23015 -22.33343 -21.52971 -19.90091 -18.76660 -18.38007 -17.77531 -17.39768 -17.36001 -17.07773 -16.69920 -16.60197 -16.39401 -15.68936 -15.53933 -15.47057 -14.89189 -14.70826 -14.51935 -14.42275 -14.24505 -13.95868 -13.80531 -13.68302 -13.63645 -13.32849 -13.07416 -12.94056 -12.76439 -12.72469 -12.63593 -12.47774 -12.43599 -12.26172 -12.17666 -11.99645 -11.93140 -11.67796 -11.60870 -11.50639 -10.71909 -10.59959 -9.88688 -9.72406 -9.60342 -8.76874 -7.83022 -5.35080 0.20010 0.27134 1.47156 1.50991 1.57350 1.71374 2.08302 2.52552 2.63903 3.27050 3.30404 3.55144 3.65682 3.76735 3.84152 4.02010 4.04412 4.13437 4.19374 4.30807 4.32915 4.39626 4.43884 4.49174 4.55911 4.62601 4.65104 4.73199 4.76584 4.80313 4.90381 4.92379 4.98937 5.00964 5.07977 5.10049 5.12851 5.15308 5.19246 5.27938 5.37502 5.41905 5.46644 5.57008 5.61263 5.62589 5.64580 5.97888 6.30071 6.53010 7.10876 7.27245 7.81303 8.29368 9.20672 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.021976 B = 0.001901 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.825050 B =14723.040838 C =15344.006511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.098 4.098 3 H 0.126 0.874 4 C -0.089 4.089 5 C -0.074 4.074 6 C -0.058 4.058 7 C -0.133 4.133 8 C -0.091 4.091 9 C -0.168 4.168 10 C 0.072 3.928 11 F -0.153 7.153 12 C -0.162 4.162 13 C 0.501 3.499 14 O -0.594 6.594 15 N -0.611 5.611 16 C 0.068 3.932 17 C 0.111 3.889 18 C 0.150 3.850 19 N -0.618 5.618 20 C 0.180 3.820 21 C -0.265 4.265 22 H 0.080 0.920 23 C -0.059 4.059 24 N -0.943 5.943 25 Si 0.977 3.023 26 H -0.277 1.277 27 H -0.297 1.297 28 H -0.270 1.270 29 H 0.096 0.904 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.147 0.853 37 H 0.156 0.844 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.102 0.898 43 H 0.078 0.922 44 H 0.046 0.954 45 H 0.023 0.977 46 H 0.053 0.947 47 H 0.005 0.995 48 H 0.019 0.981 49 H 0.016 0.984 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.698 8.368 -26.003 30.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.119 4.119 3 H 0.143 0.857 4 C -0.127 4.127 5 C -0.110 4.110 6 C -0.058 4.058 7 C -0.151 4.151 8 C -0.109 4.109 9 C -0.187 4.187 10 C 0.053 3.947 11 F -0.132 7.132 12 C -0.181 4.181 13 C 0.291 3.709 14 O -0.475 6.475 15 N -0.344 5.344 16 C -0.073 4.073 17 C -0.015 4.015 18 C 0.023 3.977 19 N -0.342 5.342 20 C 0.034 3.966 21 C -0.394 4.394 22 H 0.098 0.902 23 C -0.253 4.253 24 N -0.589 5.589 25 Si 0.804 3.196 26 H -0.203 1.203 27 H -0.224 1.224 28 H -0.195 1.195 29 H 0.115 0.885 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.165 0.835 37 H 0.174 0.826 38 H 0.164 0.836 39 H 0.158 0.842 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.121 0.879 43 H 0.097 0.903 44 H 0.064 0.936 45 H 0.042 0.958 46 H 0.072 0.928 47 H 0.024 0.976 48 H 0.038 0.962 49 H 0.034 0.966 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -12.259 7.786 -25.950 29.737 hybrid contribution 0.205 -0.856 1.075 1.389 sum -12.054 6.930 -24.875 28.497 Atomic orbital electron populations 1.22129 0.90978 1.02763 1.05308 1.21334 0.99128 1.01196 0.90211 0.85673 1.21279 1.00646 0.98516 0.92257 1.20722 1.02789 0.98804 0.88728 1.19973 0.94089 0.95357 0.96360 1.21510 0.95732 1.01090 0.96741 1.21356 1.00319 0.94269 0.94937 1.21406 0.93210 1.01272 1.02808 1.18031 0.90942 0.91071 0.94612 1.91461 1.74887 1.64265 1.82586 1.21231 1.02345 0.98733 0.95777 1.21614 0.79256 0.84230 0.85776 1.90686 1.40392 1.29160 1.87218 1.48030 1.51024 1.30117 1.05199 1.22281 0.94503 0.86035 1.04474 1.21901 0.97026 0.96261 0.86284 1.21028 0.93521 0.95486 0.87709 1.44080 1.59013 1.29082 1.01982 1.20489 0.93372 0.87690 0.95010 1.19539 1.05603 1.29418 0.84884 0.90249 1.25949 0.95373 1.01407 1.02614 1.70264 1.09509 1.49132 1.30017 0.85203 0.76988 0.78402 0.78998 1.20284 1.22368 1.19512 0.88497 0.93725 0.89696 0.93285 0.93062 0.88544 0.88236 0.83514 0.82598 0.83637 0.84180 0.90350 0.90987 0.87945 0.90334 0.93581 0.95838 0.92830 0.97645 0.96226 0.96571 0.94250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.58 71.98 0.62 -1.16 16 2 C -0.10 -1.66 1.92 -11.54 -0.02 -1.68 16 3 H 0.13 1.45 7.40 -2.39 -0.02 1.43 16 4 C -0.09 -1.64 4.01 30.59 0.12 -1.52 16 5 C -0.07 -0.83 5.10 29.85 0.15 -0.68 16 6 C -0.06 -0.87 5.13 -19.87 -0.10 -0.97 16 7 C -0.13 -1.83 9.70 22.27 0.22 -1.61 16 8 C -0.09 -1.20 10.04 22.26 0.22 -0.98 16 9 C -0.17 -2.64 10.03 22.31 0.22 -2.42 16 10 C 0.07 1.38 7.30 22.38 0.16 1.55 16 11 F -0.15 -3.29 17.27 44.97 0.78 -2.51 16 12 C -0.16 -2.80 9.68 22.31 0.22 -2.58 16 13 C 0.50 14.52 7.08 87.66 0.62 15.14 16 14 O -0.59 -23.75 15.50 -3.03 -0.05 -23.79 16 15 N -0.61 -16.84 2.87 -846.77 -2.43 -19.28 16 16 C 0.07 1.12 8.80 127.77 1.12 2.25 16 17 C 0.11 4.08 5.73 86.38 0.50 4.57 16 18 C 0.15 6.48 5.97 86.38 0.52 6.99 16 19 N -0.62 -32.68 2.92 -726.94 -2.12 -34.81 16 20 C 0.18 9.78 8.98 127.77 1.15 10.92 16 21 C -0.26 -14.60 9.65 84.03 0.81 -13.79 16 22 H 0.08 4.08 7.86 -2.91 -0.02 4.06 16 23 C -0.06 -3.33 5.10 84.86 0.43 -2.90 16 24 N -0.94 -57.42 10.71 21.65 0.23 -57.18 16 25 Si 0.98 44.95 29.57 68.60 2.03 46.98 16 26 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 27 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 28 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 29 H 0.10 0.58 6.56 -2.39 -0.02 0.56 16 30 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.78 4.53 -2.38 -0.01 0.77 16 32 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.05 1.19 7.95 -2.39 -0.02 1.17 16 34 H 0.10 0.76 6.51 -2.39 -0.02 0.75 16 35 H 0.10 0.74 8.08 -2.39 -0.02 0.72 16 36 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 37 H 0.16 1.22 8.06 -2.91 -0.02 1.19 16 38 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 39 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 40 H 0.08 0.99 6.95 -2.39 -0.02 0.97 16 41 H 0.07 1.26 8.07 -2.39 -0.02 1.24 16 42 H 0.10 1.03 6.01 -2.39 -0.01 1.02 16 43 H 0.08 2.78 8.07 -2.39 -0.02 2.76 16 44 H 0.05 1.96 7.42 -2.39 -0.02 1.95 16 45 H 0.02 1.06 8.07 -2.38 -0.02 1.05 16 46 H 0.05 2.20 8.04 -2.39 -0.02 2.18 16 47 H 0.01 0.31 7.34 -2.39 -0.02 0.29 16 48 H 0.02 1.10 7.34 -2.39 -0.02 1.08 16 49 H 0.02 0.80 8.03 -2.39 -0.02 0.78 16 50 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16 Total: -1.00 -76.69 404.05 6.31 -70.39 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 0.92 Total: 9.06 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 6.96 Total: 11.15 kcal Atomic # 7 Polarization: -106.94 SS G_CDS: -4.33 Total: -111.27 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.05 Total: -23.79 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.78 Total: -2.51 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -76.69 6.31 -70.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667664028.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.487 kcal (2) G-P(sol) polarization free energy of solvation -76.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds