Wall clock time and date at job start Tue Mar 31 2020 20:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 C 1.53001 * 109.47049 * 185.00237 * 4 2 1 6 6 N 1.46496 * 109.46907 * 180.02562 * 5 4 2 7 7 C 1.36940 * 119.99895 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99861 * 0.02562 * 7 6 5 9 9 C 1.38814 * 120.00211 * 179.97438 * 7 6 5 10 10 N 1.31621 * 119.99686 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00151 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.46845 * 0.02562 * 11 9 7 13 13 H 1.48493 * 109.47013 * 120.00112 * 11 9 7 14 14 H 1.48508 * 109.47013 * 240.00312 * 11 9 7 15 15 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 16 16 C 1.34770 * 120.00256 * 84.99846 * 15 2 1 17 17 O 1.21283 * 120.00026 * 359.97438 * 16 15 2 18 18 C 1.50701 * 119.99922 * 180.02562 * 16 15 2 19 19 H 1.08991 * 109.47241 * 299.99575 * 18 16 15 20 20 C 1.52999 * 109.47346 * 59.99959 * 18 16 15 21 21 C 1.53002 * 109.47061 * 179.97438 * 18 16 15 22 22 C 1.53002 * 109.47176 * 174.99992 * 21 18 16 23 23 C 1.50698 * 109.47165 * 180.02562 * 22 21 18 24 24 C 1.38268 * 119.98495 * 269.72556 * 23 22 21 25 25 C 1.38226 * 120.04739 * 179.72337 * 24 23 22 26 26 C 1.38219 * 120.02823 * 0.54959 * 25 24 23 27 27 C 1.38437 * 119.97249 * 359.72804 * 26 25 24 28 28 F 1.35104 * 120.02406 * 180.02562 * 27 26 25 29 29 C 1.38180 * 119.98927 * 89.99679 * 23 22 21 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 33 33 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 34 34 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 35 35 H 1.08998 * 109.47250 * 300.00119 * 5 4 2 36 36 H 1.08998 * 109.47252 * 60.00195 * 5 4 2 37 37 H 0.97002 * 120.00674 * 0.02562 * 6 5 4 38 38 H 0.97001 * 119.99967 * 180.02562 * 10 9 7 39 39 H 0.97005 * 119.99374 * 264.99912 * 15 2 1 40 40 H 1.09006 * 109.47048 * 60.00093 * 20 18 16 41 41 H 1.09004 * 109.47178 * 179.97438 * 20 18 16 42 42 H 1.09000 * 109.46920 * 300.00195 * 20 18 16 43 43 H 1.09002 * 109.47267 * 295.00261 * 21 18 16 44 44 H 1.09001 * 109.47055 * 54.99930 * 21 18 16 45 45 H 1.08999 * 109.47042 * 299.99798 * 22 21 18 46 46 H 1.08993 * 109.47068 * 60.00336 * 22 21 18 47 47 H 1.07991 * 119.97499 * 359.97438 * 24 23 22 48 48 H 1.08008 * 119.98634 * 180.27004 * 25 24 23 49 49 H 1.08000 * 120.01137 * 179.74605 * 26 25 24 50 50 H 1.07995 * 120.01273 * 359.97438 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 7 4.0532 -1.3044 2.5095 7 6 5.3954 -1.3413 2.7788 8 1 6.0938 -0.8604 2.1099 9 6 5.8581 -1.9957 3.9122 10 7 5.0069 -2.5812 4.7277 11 14 7.6889 -2.0454 4.2800 12 1 8.4272 -1.3173 3.2171 13 1 7.9477 -1.4005 5.5923 14 1 8.1469 -3.4574 4.3233 15 7 2.0184 -0.6905 -1.1962 16 6 2.1471 -0.0181 -2.3571 17 8 1.8582 1.1586 -2.4116 18 6 2.6490 -0.7286 -3.5877 19 1 3.6480 -1.1210 -3.3987 20 6 1.7045 -1.8821 -3.9315 21 6 2.7000 0.2545 -4.7590 22 6 3.3257 -0.4324 -5.9746 23 6 3.3764 0.5360 -7.1280 24 6 2.3171 0.6125 -8.0133 25 6 2.3598 1.5044 -9.0685 26 6 3.4667 2.3129 -9.2463 27 6 4.5304 2.2331 -8.3639 28 9 5.6126 3.0232 -8.5365 29 6 4.4840 1.3433 -7.3038 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.6054 -0.2618 2.1369 34 1 1.7517 -1.7715 1.2055 35 1 3.9995 -1.0727 0.4259 36 1 3.8532 0.4370 1.3574 37 1 3.4260 -1.7366 3.1101 38 1 5.3302 -3.0382 5.5198 39 1 2.2491 -1.6317 -1.1527 40 1 0.7053 -1.4895 -4.1207 41 1 2.0672 -2.3957 -4.8219 42 1 1.6677 -2.5825 -3.0972 43 1 1.6889 0.5789 -5.0054 44 1 3.3015 1.1199 -4.4811 45 1 4.3367 -0.7567 -5.7282 46 1 2.7241 -1.2978 -6.2525 47 1 1.4539 -0.0222 -7.8779 48 1 1.5299 1.5664 -9.7569 49 1 3.5016 3.0067 -10.0732 50 1 5.3131 1.2806 -6.6146 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668318670.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:10 Heat of formation + Delta-G solvation = -79.181956 kcal Electronic energy + Delta-G solvation = -27948.731692 eV Core-core repulsion = 23889.331593 eV Total energy + Delta-G solvation = -4059.400099 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.18473 -40.16639 -39.47745 -36.82568 -35.65387 -34.35594 -32.85464 -31.70801 -30.90741 -30.50210 -28.52083 -27.87964 -25.65285 -24.12444 -23.22230 -23.03453 -21.69672 -21.23292 -20.55941 -19.87193 -17.78833 -17.20907 -16.90270 -16.67855 -16.51051 -16.14195 -15.88434 -15.53210 -14.87095 -14.63280 -14.52435 -14.04263 -13.99023 -13.75424 -13.62728 -13.40620 -13.29595 -13.12821 -12.99959 -12.83614 -12.68609 -12.34539 -12.14318 -11.88538 -11.82168 -11.79291 -11.46532 -11.22743 -11.05718 -11.01934 -10.91227 -10.80224 -10.64139 -10.56259 -10.02746 -9.72675 -9.65422 -9.30252 -9.00320 -8.98342 -8.86756 -6.93973 -5.78524 -3.07224 0.79464 0.84108 2.70832 3.14761 3.29405 3.42006 3.47937 3.50082 3.87919 4.24592 4.37542 4.53057 4.57028 4.61825 4.67895 4.74376 4.84786 4.93576 4.95099 5.07619 5.15586 5.21938 5.26345 5.32230 5.36143 5.50507 5.53893 5.57499 5.60445 5.64949 5.71625 5.73431 5.76099 5.78335 5.91539 5.93923 5.95321 6.04540 6.09688 6.18633 6.23410 6.27768 6.33236 6.54001 6.58351 6.80184 6.86145 7.59793 7.69118 8.30500 8.40555 9.51670 10.09464 10.44061 11.44412 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012128 B = 0.001977 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.214293 B =14157.622574 C =15695.398189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.144 3.856 3 H 0.087 0.913 4 C -0.135 4.135 5 C 0.154 3.846 6 N -0.734 5.734 7 C -0.238 4.238 8 H 0.070 0.930 9 C -0.016 4.016 10 N -0.934 5.934 11 Si 0.907 3.093 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 N -0.718 5.718 16 C 0.517 3.483 17 O -0.545 6.545 18 C -0.113 4.113 19 H 0.100 0.900 20 C -0.146 4.146 21 C -0.093 4.093 22 C -0.086 4.086 23 C -0.047 4.047 24 C -0.128 4.128 25 C -0.089 4.089 26 C -0.162 4.162 27 C 0.100 3.900 28 F -0.141 7.141 29 C -0.151 4.151 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.018 0.982 36 H 0.017 0.983 37 H 0.383 0.617 38 H 0.254 0.746 39 H 0.401 0.599 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.129 0.871 48 H 0.132 0.868 49 H 0.133 0.867 50 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.888 3.419 -27.924 29.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.039 3.961 3 H 0.105 0.895 4 C -0.173 4.173 5 C 0.027 3.973 6 N -0.378 5.378 7 C -0.370 4.370 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.582 5.582 11 Si 0.738 3.262 12 H -0.206 1.206 13 H -0.218 1.218 14 H -0.218 1.218 15 N -0.370 5.370 16 C 0.304 3.696 17 O -0.422 6.422 18 C -0.135 4.135 19 H 0.118 0.882 20 C -0.203 4.203 21 C -0.131 4.131 22 C -0.123 4.123 23 C -0.047 4.047 24 C -0.146 4.146 25 C -0.107 4.107 26 C -0.181 4.181 27 C 0.081 3.919 28 F -0.119 7.119 29 C -0.170 4.170 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.036 0.964 36 H 0.035 0.965 37 H 0.217 0.783 38 H 0.064 0.936 39 H 0.236 0.764 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.099 0.901 47 H 0.147 0.853 48 H 0.150 0.850 49 H 0.151 0.849 50 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.871 4.335 -27.963 29.969 hybrid contribution 1.188 -0.481 0.538 1.390 sum -8.683 3.854 -27.425 29.024 Atomic orbital electron populations 1.22151 0.95545 1.01904 1.02218 1.20966 0.93496 0.97700 0.83902 0.89471 1.22061 0.98031 1.00753 0.96451 1.20626 0.90393 0.95590 0.90707 1.42378 1.05387 1.64890 1.25179 1.19276 0.83842 1.28345 1.05498 0.91198 1.24754 0.97755 1.00947 0.97675 1.69670 1.32690 1.40781 1.15099 0.86112 0.85044 0.77212 0.77818 1.20556 1.21835 1.21844 1.46147 1.66955 1.14208 1.09651 1.20555 0.77370 0.87188 0.84534 1.90687 1.50280 1.16072 1.85176 1.21343 1.01491 0.97135 0.93495 0.88215 1.21837 0.99185 0.96903 1.02396 1.21361 1.02316 0.97635 0.91771 1.20767 1.02571 0.96621 0.92319 1.19759 0.92932 0.96119 0.95935 1.21144 0.98683 0.99738 0.95052 1.21010 0.97290 0.94753 0.97674 1.21145 0.93873 1.02481 1.00592 1.17730 0.84703 0.92476 0.97016 1.91510 1.53000 1.72279 1.95151 1.21102 1.00341 0.97316 0.98243 0.92584 0.91615 0.92496 0.90314 0.91410 0.96408 0.96468 0.78329 0.93572 0.76442 0.92093 0.91260 0.91924 0.90997 0.90729 0.90384 0.90102 0.85293 0.85043 0.84927 0.84629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.48 37.16 0.35 -1.49 16 2 C 0.14 1.92 2.57 -67.93 -0.17 1.75 16 3 H 0.09 1.34 7.58 -51.93 -0.39 0.94 16 4 C -0.13 -2.05 4.87 -26.73 -0.13 -2.18 16 5 C 0.15 3.06 6.15 -4.04 -0.02 3.04 16 6 N -0.73 -18.54 5.60 -59.91 -0.34 -18.88 16 7 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 10 N -0.93 -28.20 13.06 55.49 0.72 -27.47 16 11 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 14 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 15 N -0.72 -8.57 4.42 -53.80 -0.24 -8.81 16 16 C 0.52 6.48 7.12 -10.99 -0.08 6.40 16 17 O -0.54 -8.85 15.58 5.55 0.09 -8.76 16 18 C -0.11 -1.00 2.73 -91.77 -0.25 -1.25 16 19 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 20 C -0.15 -0.97 8.84 37.16 0.33 -0.64 16 21 C -0.09 -0.82 4.01 -26.73 -0.11 -0.92 16 22 C -0.09 -0.57 5.10 -27.88 -0.14 -0.71 16 23 C -0.05 -0.37 5.13 -104.63 -0.54 -0.91 16 24 C -0.13 -0.88 9.70 -39.57 -0.38 -1.27 16 25 C -0.09 -0.59 10.04 -39.59 -0.40 -0.98 16 26 C -0.16 -1.25 10.03 -39.52 -0.40 -1.65 16 27 C 0.10 0.94 7.30 -39.42 -0.29 0.65 16 28 F -0.14 -1.49 17.27 2.25 0.04 -1.45 16 29 C -0.15 -1.34 9.68 -39.51 -0.38 -1.72 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.02 0.35 7.75 -51.93 -0.40 -0.05 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.38 10.09 7.67 -40.82 -0.31 9.78 16 38 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.40 4.14 8.02 -40.82 -0.33 3.81 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.35 6.56 -51.93 -0.34 0.01 16 42 H 0.06 0.40 7.56 -51.93 -0.39 0.00 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.80 7.96 -51.93 -0.41 0.39 16 45 H 0.08 0.49 8.08 -51.93 -0.42 0.07 16 46 H 0.08 0.42 6.50 -51.93 -0.34 0.08 16 47 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 48 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 49 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 50 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 414.40 15.07 6.24 6.24 Total: -1.00 -33.55 414.40 -9.74 -43.29 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -8.38 Total: 7.68 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -2.86 Total: -9.29 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: 0.15 Total: -55.16 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.55 -9.74 -43.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668318670.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.891 kcal (2) G-P(sol) polarization free energy of solvation -33.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds