Wall clock time and date at job start Tue Mar 31 2020 20:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 C 1.53001 * 109.47049 * 185.00237 * 4 2 1 6 6 N 1.46496 * 109.46907 * 180.02562 * 5 4 2 7 7 C 1.36940 * 119.99895 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99861 * 0.02562 * 7 6 5 9 9 C 1.38814 * 120.00211 * 179.97438 * 7 6 5 10 10 N 1.31621 * 119.99686 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00151 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.46845 * 0.02562 * 11 9 7 13 13 H 1.48493 * 109.47013 * 120.00112 * 11 9 7 14 14 H 1.48508 * 109.47013 * 240.00312 * 11 9 7 15 15 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 16 16 C 1.34770 * 120.00256 * 84.99846 * 15 2 1 17 17 O 1.21283 * 120.00026 * 359.97438 * 16 15 2 18 18 C 1.50701 * 119.99922 * 180.02562 * 16 15 2 19 19 H 1.08991 * 109.47241 * 299.99575 * 18 16 15 20 20 C 1.52999 * 109.47346 * 59.99959 * 18 16 15 21 21 C 1.53002 * 109.47061 * 179.97438 * 18 16 15 22 22 C 1.53002 * 109.47176 * 174.99992 * 21 18 16 23 23 C 1.50698 * 109.47165 * 180.02562 * 22 21 18 24 24 C 1.38268 * 119.98495 * 269.72556 * 23 22 21 25 25 C 1.38226 * 120.04739 * 179.72337 * 24 23 22 26 26 C 1.38219 * 120.02823 * 0.54959 * 25 24 23 27 27 C 1.38437 * 119.97249 * 359.72804 * 26 25 24 28 28 F 1.35104 * 120.02406 * 180.02562 * 27 26 25 29 29 C 1.38180 * 119.98927 * 89.99679 * 23 22 21 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 33 33 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 34 34 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 35 35 H 1.08998 * 109.47250 * 300.00119 * 5 4 2 36 36 H 1.08998 * 109.47252 * 60.00195 * 5 4 2 37 37 H 0.97002 * 120.00674 * 0.02562 * 6 5 4 38 38 H 0.97001 * 119.99967 * 180.02562 * 10 9 7 39 39 H 0.97005 * 119.99374 * 264.99912 * 15 2 1 40 40 H 1.09006 * 109.47048 * 60.00093 * 20 18 16 41 41 H 1.09004 * 109.47178 * 179.97438 * 20 18 16 42 42 H 1.09000 * 109.46920 * 300.00195 * 20 18 16 43 43 H 1.09002 * 109.47267 * 295.00261 * 21 18 16 44 44 H 1.09001 * 109.47055 * 54.99930 * 21 18 16 45 45 H 1.08999 * 109.47042 * 299.99798 * 22 21 18 46 46 H 1.08993 * 109.47068 * 60.00336 * 22 21 18 47 47 H 1.07991 * 119.97499 * 359.97438 * 24 23 22 48 48 H 1.08008 * 119.98634 * 180.27004 * 25 24 23 49 49 H 1.08000 * 120.01137 * 179.74605 * 26 25 24 50 50 H 1.07995 * 120.01273 * 359.97438 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 7 4.0532 -1.3044 2.5095 7 6 5.3954 -1.3413 2.7788 8 1 6.0938 -0.8604 2.1099 9 6 5.8581 -1.9957 3.9122 10 7 5.0069 -2.5812 4.7277 11 14 7.6889 -2.0454 4.2800 12 1 8.4272 -1.3173 3.2171 13 1 7.9477 -1.4005 5.5923 14 1 8.1469 -3.4574 4.3233 15 7 2.0184 -0.6905 -1.1962 16 6 2.1471 -0.0181 -2.3571 17 8 1.8582 1.1586 -2.4116 18 6 2.6490 -0.7286 -3.5877 19 1 3.6480 -1.1210 -3.3987 20 6 1.7045 -1.8821 -3.9315 21 6 2.7000 0.2545 -4.7590 22 6 3.3257 -0.4324 -5.9746 23 6 3.3764 0.5360 -7.1280 24 6 2.3171 0.6125 -8.0133 25 6 2.3598 1.5044 -9.0685 26 6 3.4667 2.3129 -9.2463 27 6 4.5304 2.2331 -8.3639 28 9 5.6126 3.0232 -8.5365 29 6 4.4840 1.3433 -7.3038 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.6054 -0.2618 2.1369 34 1 1.7517 -1.7715 1.2055 35 1 3.9995 -1.0727 0.4259 36 1 3.8532 0.4370 1.3574 37 1 3.4260 -1.7366 3.1101 38 1 5.3302 -3.0382 5.5198 39 1 2.2491 -1.6317 -1.1527 40 1 0.7053 -1.4895 -4.1207 41 1 2.0672 -2.3957 -4.8219 42 1 1.6677 -2.5825 -3.0972 43 1 1.6889 0.5789 -5.0054 44 1 3.3015 1.1199 -4.4811 45 1 4.3367 -0.7567 -5.7282 46 1 2.7241 -1.2978 -6.2525 47 1 1.4539 -0.0222 -7.8779 48 1 1.5299 1.5664 -9.7569 49 1 3.5016 3.0067 -10.0732 50 1 5.3131 1.2806 -6.6146 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668318670.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:09 Heat of formation + Delta-G solvation = -98.293567 kcal Electronic energy + Delta-G solvation = -27949.560434 eV Core-core repulsion = 23889.331593 eV Total energy + Delta-G solvation = -4060.228841 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.91929 -41.11669 -40.10319 -38.02251 -36.54171 -36.04487 -33.79177 -33.18583 -31.83829 -31.43474 -29.43777 -29.10953 -26.29745 -25.88068 -24.16439 -23.65013 -23.12204 -22.12799 -21.62845 -20.75232 -19.21406 -18.44905 -17.84322 -17.35190 -17.23590 -17.06352 -16.70798 -16.62267 -16.34946 -15.63773 -15.50773 -15.35616 -15.10503 -14.97466 -14.73708 -14.50601 -14.26860 -14.17563 -13.78171 -13.65786 -13.48405 -13.22072 -13.10685 -12.91927 -12.86864 -12.68392 -12.47625 -12.41356 -12.38618 -12.23171 -12.08400 -12.00121 -11.91771 -11.67625 -11.60794 -11.56079 -10.97429 -10.66174 -10.02398 -9.89520 -9.60618 -9.02104 -7.97554 -5.26492 0.19785 0.26442 1.46370 1.47251 1.57268 1.72685 2.27326 2.54069 2.64501 3.26708 3.36089 3.61173 3.65193 3.79453 3.84345 3.99950 4.04351 4.08358 4.16759 4.19325 4.31481 4.37260 4.38825 4.52437 4.55387 4.56230 4.57987 4.66716 4.76528 4.77491 4.87157 4.97310 4.99789 5.02256 5.04558 5.07654 5.15608 5.20195 5.23170 5.26574 5.33215 5.37819 5.40021 5.44548 5.47420 5.61860 5.62586 5.97615 6.25281 6.63726 7.31734 7.33411 8.06833 8.30939 9.25816 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012128 B = 0.001977 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.214293 B =14157.622574 C =15695.398189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.151 3.849 3 H 0.063 0.937 4 C -0.118 4.118 5 C 0.154 3.846 6 N -0.745 5.745 7 C -0.247 4.247 8 H 0.071 0.929 9 C -0.074 4.074 10 N -0.966 5.966 11 Si 0.973 3.027 12 H -0.269 1.269 13 H -0.293 1.293 14 H -0.289 1.289 15 N -0.713 5.713 16 C 0.512 3.488 17 O -0.587 6.587 18 C -0.107 4.107 19 H 0.111 0.889 20 C -0.141 4.141 21 C -0.086 4.086 22 C -0.077 4.077 23 C -0.057 4.057 24 C -0.128 4.128 25 C -0.089 4.089 26 C -0.167 4.167 27 C 0.071 3.929 28 F -0.155 7.155 29 C -0.168 4.168 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.025 0.975 36 H 0.004 0.996 37 H 0.376 0.624 38 H 0.252 0.748 39 H 0.411 0.589 40 H 0.057 0.943 41 H 0.092 0.908 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.045 0.955 45 H 0.082 0.918 46 H 0.105 0.895 47 H 0.153 0.847 48 H 0.161 0.839 49 H 0.146 0.854 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.731 1.985 -29.445 31.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.045 3.955 3 H 0.081 0.919 4 C -0.156 4.156 5 C 0.028 3.972 6 N -0.388 5.388 7 C -0.379 4.379 8 H 0.089 0.911 9 C -0.267 4.267 10 N -0.617 5.617 11 Si 0.802 3.198 12 H -0.193 1.193 13 H -0.220 1.220 14 H -0.216 1.216 15 N -0.365 5.365 16 C 0.300 3.700 17 O -0.468 6.468 18 C -0.128 4.128 19 H 0.129 0.871 20 C -0.199 4.199 21 C -0.124 4.124 22 C -0.114 4.114 23 C -0.057 4.057 24 C -0.146 4.146 25 C -0.106 4.106 26 C -0.186 4.186 27 C 0.052 3.948 28 F -0.134 7.134 29 C -0.186 4.186 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.043 0.957 36 H 0.022 0.978 37 H 0.208 0.792 38 H 0.061 0.939 39 H 0.248 0.752 40 H 0.076 0.924 41 H 0.111 0.889 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.101 0.899 46 H 0.123 0.877 47 H 0.171 0.829 48 H 0.178 0.822 49 H 0.164 0.836 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.714 2.896 -29.516 31.534 hybrid contribution 1.409 0.020 0.976 1.714 sum -9.305 2.916 -28.541 30.160 Atomic orbital electron populations 1.22060 0.93674 1.02955 1.02234 1.20777 0.94823 0.96227 0.83651 0.91867 1.21890 0.94535 1.01787 0.97421 1.20754 0.93544 0.94021 0.88893 1.42567 1.04489 1.65200 1.26565 1.19626 0.85278 1.27580 1.05388 0.91097 1.25564 1.02031 1.01262 0.97822 1.69810 1.34487 1.41878 1.15534 0.85087 0.80125 0.77122 0.77504 1.19339 1.22041 1.21611 1.46116 1.66596 1.14631 1.09159 1.21275 0.76457 0.86792 0.85485 1.90670 1.52191 1.18053 1.85868 1.21374 1.02477 0.97493 0.91440 0.87083 1.21850 0.98402 0.95919 1.03705 1.21260 1.01457 0.96949 0.92766 1.20735 1.03117 0.96759 0.90796 1.19953 0.92905 0.96215 0.96638 1.21506 0.98896 0.99708 0.94488 1.21389 0.97497 0.93821 0.97917 1.21417 0.93699 1.02913 1.00578 1.18063 0.85180 0.93291 0.98261 1.91464 1.53805 1.72787 1.95334 1.21240 1.01072 0.97936 0.98388 0.90957 0.90898 0.93206 0.90419 0.90146 0.95679 0.97843 0.79223 0.93900 0.75233 0.92353 0.88900 0.91306 0.91787 0.93589 0.89917 0.87683 0.82888 0.82181 0.83577 0.84957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.48 71.98 0.68 -2.58 16 2 C 0.15 3.90 2.57 44.99 0.12 4.02 16 3 H 0.06 1.97 7.58 -2.39 -0.02 1.95 16 4 C -0.12 -3.48 4.87 30.59 0.15 -3.33 16 5 C 0.15 6.07 6.15 86.38 0.53 6.60 16 6 N -0.75 -37.61 5.60 -343.46 -1.92 -39.53 16 7 C -0.25 -13.87 9.99 84.03 0.84 -13.03 16 8 H 0.07 3.89 7.83 -2.91 -0.02 3.86 16 9 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 10 N -0.97 -58.61 13.06 21.65 0.28 -58.33 16 11 Si 0.97 46.09 29.55 68.60 2.03 48.12 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 13 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 14 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 15 N -0.71 -16.21 4.42 -442.53 -1.96 -18.17 16 16 C 0.51 12.54 7.12 87.66 0.62 13.16 16 17 O -0.59 -19.44 15.58 -3.04 -0.05 -19.49 16 18 C -0.11 -1.71 2.73 -11.54 -0.03 -1.74 16 19 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 20 C -0.14 -1.46 8.84 71.98 0.64 -0.82 16 21 C -0.09 -1.45 4.01 30.60 0.12 -1.33 16 22 C -0.08 -0.89 5.10 29.85 0.15 -0.73 16 23 C -0.06 -0.83 5.13 -19.87 -0.10 -0.93 16 24 C -0.13 -1.48 9.70 22.27 0.22 -1.26 16 25 C -0.09 -0.98 10.04 22.26 0.22 -0.76 16 26 C -0.17 -2.46 10.03 22.31 0.22 -2.24 16 27 C 0.07 1.38 7.30 22.37 0.16 1.54 16 28 F -0.16 -3.47 17.27 44.97 0.78 -2.69 16 29 C -0.17 -3.04 9.68 22.31 0.22 -2.83 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 33 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.03 0.96 7.75 -2.39 -0.02 0.94 16 36 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 37 H 0.38 19.86 7.67 -92.71 -0.71 19.15 16 38 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 39 H 0.41 7.67 8.02 -92.70 -0.74 6.93 16 40 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 41 H 0.09 0.55 6.56 -2.38 -0.02 0.54 16 42 H 0.07 0.65 7.56 -2.39 -0.02 0.63 16 43 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.05 1.03 7.96 -2.39 -0.02 1.01 16 45 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 46 H 0.10 0.71 6.50 -2.39 -0.02 0.69 16 47 H 0.15 0.99 8.06 -2.92 -0.02 0.97 16 48 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 49 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 50 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -73.36 414.40 3.87 -69.49 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: -0.52 Total: 30.66 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: 5.23 Total: -10.06 kcal Atomic # 7 Polarization: -112.43 SS G_CDS: -3.60 Total: -116.03 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.05 Total: -19.49 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.78 Total: -2.69 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -73.36 3.87 -69.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668318670.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.806 kcal (2) G-P(sol) polarization free energy of solvation -73.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds