Wall clock time and date at job start Tue Mar 31 2020 20:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 C 1.52992 * 109.47159 * 174.99654 * 4 2 1 6 6 N 1.46506 * 109.47390 * 179.97438 * 5 4 2 7 7 C 1.36930 * 120.00358 * 180.02562 * 6 5 4 8 8 H 1.08007 * 119.99903 * 0.02562 * 7 6 5 9 9 C 1.38806 * 120.00165 * 180.02562 * 7 6 5 10 10 N 1.31620 * 120.00294 * 359.97438 * 9 7 6 11 11 Si 1.86810 * 120.00296 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47161 * 89.99507 * 11 9 7 13 13 H 1.48494 * 109.46911 * 210.00050 * 11 9 7 14 14 H 1.48502 * 109.46622 * 330.00023 * 11 9 7 15 15 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 16 16 C 1.34777 * 119.99525 * 274.99614 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 20 20 C 1.52998 * 109.47092 * 300.27576 * 18 16 15 21 21 C 1.53004 * 109.47208 * 180.27843 * 18 16 15 22 22 C 1.52998 * 109.47023 * 185.00002 * 21 18 16 23 23 C 1.50703 * 109.46948 * 180.02562 * 22 21 18 24 24 C 1.38271 * 119.98599 * 269.72610 * 23 22 21 25 25 C 1.38222 * 120.05276 * 179.72478 * 24 23 22 26 26 C 1.38221 * 120.02375 * 0.54495 * 25 24 23 27 27 C 1.38441 * 119.97205 * 359.72921 * 26 25 24 28 28 F 1.35106 * 120.02260 * 180.02562 * 27 26 25 29 29 C 1.38173 * 119.98892 * 89.99614 * 23 22 21 30 30 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 32 32 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 33 33 H 1.09002 * 109.46733 * 294.99544 * 4 2 1 34 34 H 1.09003 * 109.47212 * 54.99369 * 4 2 1 35 35 H 1.08994 * 109.47570 * 300.00116 * 5 4 2 36 36 H 1.09008 * 109.47295 * 60.00253 * 5 4 2 37 37 H 0.97004 * 119.99536 * 0.02562 * 6 5 4 38 38 H 0.97001 * 120.00389 * 179.97438 * 10 9 7 39 39 H 0.97000 * 120.00580 * 95.00360 * 15 2 1 40 40 H 1.09004 * 109.47239 * 60.00118 * 20 18 16 41 41 H 1.09005 * 109.47323 * 180.02562 * 20 18 16 42 42 H 1.09006 * 109.47458 * 299.99989 * 20 18 16 43 43 H 1.08998 * 109.46700 * 305.00017 * 21 18 16 44 44 H 1.09000 * 109.46893 * 64.99959 * 21 18 16 45 45 H 1.09005 * 109.47209 * 299.99293 * 22 21 18 46 46 H 1.08991 * 109.47437 * 59.99960 * 22 21 18 47 47 H 1.08000 * 119.97225 * 359.97438 * 24 23 22 48 48 H 1.08002 * 119.98683 * 180.27316 * 25 24 23 49 49 H 1.07997 * 120.01186 * 179.74540 * 26 25 24 50 50 H 1.08002 * 120.01571 * 359.97438 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 7 4.0532 -1.3040 -2.5099 7 6 5.3952 -1.3408 -2.7793 8 1 6.0938 -0.8608 -2.1099 9 6 5.8579 -1.9950 -3.9127 10 7 5.0068 -2.5805 -4.7283 11 14 7.6889 -2.0459 -4.2799 12 1 8.2879 -3.2473 -3.6450 13 1 7.8976 -2.1062 -5.7489 14 1 8.3365 -0.8245 -3.7376 15 7 2.0184 -0.6908 1.1960 16 6 2.1472 -0.0185 2.3570 17 8 1.8583 1.1582 2.4118 18 6 2.6437 -0.7305 3.5889 19 1 3.6437 -1.1227 3.4038 20 6 1.6978 -1.8846 3.9269 21 6 2.6899 0.2511 4.7616 22 6 3.3104 -0.4375 5.9789 23 6 3.3553 0.5292 7.1342 24 6 4.4648 1.3332 7.3197 25 6 4.5052 2.2244 8.3755 26 6 3.4408 2.3048 9.2537 27 6 2.3318 1.4962 9.0722 28 9 1.2907 1.5744 9.9297 29 6 2.2902 0.6078 8.0108 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.7517 -1.7714 -1.2058 34 1 1.6053 -0.2615 -2.1371 35 1 3.8531 0.4371 -1.3574 36 1 3.9995 -1.0727 -0.4262 37 1 3.4258 -1.7355 -3.1109 38 1 5.3300 -3.0373 -5.5206 39 1 2.2492 -1.6319 1.1524 40 1 1.6648 -2.5840 3.0915 41 1 2.0567 -2.3994 4.8182 42 1 0.6977 -1.4925 4.1122 43 1 3.2928 1.1167 4.4872 44 1 1.6779 0.5753 5.0041 45 1 2.7073 -1.3031 6.2533 46 1 4.3223 -0.7617 5.7364 47 1 5.2989 1.2677 6.6368 48 1 5.3705 2.8550 8.5169 49 1 3.4743 2.9982 10.0810 50 1 1.4253 -0.0231 7.8680 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668318673.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:23 Heat of formation + Delta-G solvation = -79.190564 kcal Electronic energy + Delta-G solvation = -27932.404098 eV Core-core repulsion = 23873.003626 eV Total energy + Delta-G solvation = -4059.400473 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.21153 -40.16623 -39.47739 -36.82533 -35.65436 -34.35707 -32.84985 -31.70623 -30.91680 -30.50526 -28.51305 -27.88007 -25.65004 -24.12514 -23.27699 -22.98307 -21.69572 -21.23803 -20.56013 -19.87124 -17.80719 -17.19557 -16.83165 -16.76495 -16.51829 -16.13672 -15.90853 -15.53388 -14.94353 -14.65332 -14.24586 -14.20572 -14.00091 -13.75804 -13.62915 -13.47598 -13.31964 -13.06863 -12.98583 -12.81834 -12.69782 -12.34805 -12.16277 -11.87766 -11.83479 -11.72455 -11.50446 -11.23144 -11.06216 -11.02207 -10.89368 -10.79717 -10.64988 -10.56425 -10.06043 -9.72462 -9.65509 -9.30790 -9.00323 -8.98298 -8.86601 -6.94304 -5.78549 -3.07353 0.79510 0.83783 2.70762 3.14839 3.29455 3.41862 3.47163 3.49027 3.86630 4.24398 4.36795 4.53348 4.57041 4.61482 4.69205 4.74693 4.84938 4.94558 4.95053 5.04545 5.16167 5.23537 5.26743 5.32038 5.36115 5.51996 5.53692 5.57026 5.57854 5.70380 5.70972 5.72512 5.74922 5.77138 5.90677 5.93678 5.98368 6.04716 6.09536 6.18840 6.23357 6.27815 6.33140 6.53759 6.58321 6.79859 6.85969 7.59771 7.68111 8.30462 8.40408 9.51457 10.09285 10.43954 11.44283 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014578 B = 0.001884 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.255472 B =14860.728976 C =16140.698689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.144 3.856 3 H 0.087 0.913 4 C -0.135 4.135 5 C 0.155 3.845 6 N -0.734 5.734 7 C -0.239 4.239 8 H 0.069 0.931 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.907 3.093 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 N -0.718 5.718 16 C 0.517 3.483 17 O -0.545 6.545 18 C -0.113 4.113 19 H 0.100 0.900 20 C -0.146 4.146 21 C -0.093 4.093 22 C -0.086 4.086 23 C -0.047 4.047 24 C -0.127 4.127 25 C -0.088 4.088 26 C -0.162 4.162 27 C 0.098 3.902 28 F -0.142 7.142 29 C -0.152 4.152 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.017 0.983 36 H 0.018 0.982 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.401 0.599 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.131 0.869 48 H 0.132 0.868 49 H 0.133 0.867 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.447 4.234 27.087 28.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.039 3.961 3 H 0.105 0.895 4 C -0.173 4.173 5 C 0.027 3.973 6 N -0.378 5.378 7 C -0.370 4.370 8 H 0.087 0.913 9 C -0.211 4.211 10 N -0.582 5.582 11 Si 0.738 3.262 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.208 1.208 15 N -0.370 5.370 16 C 0.304 3.696 17 O -0.422 6.422 18 C -0.134 4.134 19 H 0.118 0.882 20 C -0.204 4.204 21 C -0.131 4.131 22 C -0.123 4.123 23 C -0.048 4.048 24 C -0.145 4.145 25 C -0.106 4.106 26 C -0.181 4.181 27 C 0.079 3.921 28 F -0.120 7.120 29 C -0.171 4.171 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.035 0.965 36 H 0.036 0.964 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.236 0.764 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.097 0.903 46 H 0.098 0.902 47 H 0.149 0.851 48 H 0.150 0.850 49 H 0.151 0.849 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.523 5.122 27.142 28.627 hybrid contribution 0.746 -0.635 -0.377 1.050 sum -6.776 4.486 26.765 27.971 Atomic orbital electron populations 1.22153 0.95549 1.01912 1.02221 1.20966 0.93494 0.97690 0.83903 0.89467 1.22063 0.98031 1.00758 0.96450 1.20626 0.90394 0.95581 0.90705 1.42371 1.05365 1.64939 1.25147 1.19225 0.83838 1.28492 1.05489 0.91258 1.24750 0.97733 1.00938 0.97663 1.69657 1.32772 1.40714 1.15096 0.86184 0.85094 0.77669 0.77225 1.21715 1.21738 1.20763 1.46147 1.66946 1.14203 1.09666 1.20557 0.77353 0.87197 0.84537 1.90687 1.50231 1.16097 1.85203 1.21341 1.01506 0.97119 0.93471 0.88197 1.21841 0.99202 0.96912 1.02413 1.21361 1.02346 0.97645 0.91734 1.20768 1.02614 0.96644 0.92248 1.19761 0.92974 0.96645 0.95380 1.21195 0.98517 0.96365 0.98407 1.21032 0.97861 0.97826 0.93895 1.21148 0.93688 1.01147 1.02077 1.17720 0.85512 0.98681 0.90183 1.91503 1.56315 1.95474 1.68753 1.21048 1.00441 1.00492 0.95092 0.92583 0.92490 0.91616 0.91412 0.90316 0.96477 0.96413 0.78327 0.93520 0.76439 0.91908 0.91263 0.92104 0.90650 0.91074 0.90279 0.90204 0.85137 0.84966 0.84927 0.84781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.48 37.16 0.35 -1.51 16 2 C 0.14 1.92 2.57 -67.93 -0.17 1.75 16 3 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 4 C -0.13 -2.04 4.87 -26.73 -0.13 -2.17 16 5 C 0.15 3.05 6.15 -4.04 -0.02 3.02 16 6 N -0.73 -18.47 5.60 -59.91 -0.34 -18.80 16 7 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 10 N -0.93 -28.11 13.06 55.49 0.72 -27.38 16 11 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 13 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 N -0.72 -8.57 4.42 -53.80 -0.24 -8.81 16 16 C 0.52 6.47 7.12 -10.98 -0.08 6.40 16 17 O -0.54 -8.83 15.58 5.55 0.09 -8.75 16 18 C -0.11 -0.99 2.73 -91.77 -0.25 -1.24 16 19 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 20 C -0.15 -1.00 8.84 37.16 0.33 -0.67 16 21 C -0.09 -0.82 4.01 -26.73 -0.11 -0.92 16 22 C -0.09 -0.57 5.10 -27.88 -0.14 -0.71 16 23 C -0.05 -0.37 5.13 -104.63 -0.54 -0.91 16 24 C -0.13 -0.94 9.70 -39.58 -0.38 -1.32 16 25 C -0.09 -0.61 10.04 -39.59 -0.40 -1.01 16 26 C -0.16 -1.25 10.03 -39.51 -0.40 -1.65 16 27 C 0.10 0.89 7.30 -39.42 -0.29 0.60 16 28 F -0.14 -1.41 17.27 2.25 0.04 -1.37 16 29 C -0.15 -1.27 9.68 -39.52 -0.38 -1.65 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.02 0.35 7.75 -51.92 -0.40 -0.05 16 37 H 0.38 10.07 7.67 -40.82 -0.31 9.75 16 38 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.40 4.14 8.01 -40.82 -0.33 3.81 16 40 H 0.06 0.41 7.55 -51.93 -0.39 0.01 16 41 H 0.07 0.37 6.56 -51.93 -0.34 0.03 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.79 7.95 -51.93 -0.41 0.37 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.08 0.44 6.51 -51.93 -0.34 0.10 16 46 H 0.08 0.47 8.08 -51.93 -0.42 0.05 16 47 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 48 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 49 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 50 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 414.38 15.07 6.24 6.24 Total: -1.00 -33.31 414.38 -9.74 -43.06 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -8.38 Total: 7.87 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -2.86 Total: -9.39 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.15 Total: -54.99 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.09 Total: -8.75 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.31 -9.74 -43.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668318673.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.135 kcal (2) G-P(sol) polarization free energy of solvation -33.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds