Wall clock time and date at job start Tue Mar 31 2020 20:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 C 1.52992 * 109.47159 * 174.99654 * 4 2 1 6 6 N 1.46506 * 109.47390 * 179.97438 * 5 4 2 7 7 C 1.36930 * 120.00358 * 180.02562 * 6 5 4 8 8 H 1.08007 * 119.99903 * 0.02562 * 7 6 5 9 9 C 1.38806 * 120.00165 * 180.02562 * 7 6 5 10 10 N 1.31620 * 120.00294 * 359.97438 * 9 7 6 11 11 Si 1.86810 * 120.00296 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47161 * 89.99507 * 11 9 7 13 13 H 1.48494 * 109.46911 * 210.00050 * 11 9 7 14 14 H 1.48502 * 109.46622 * 330.00023 * 11 9 7 15 15 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 16 16 C 1.34777 * 119.99525 * 274.99614 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 20 20 C 1.52998 * 109.47092 * 300.27576 * 18 16 15 21 21 C 1.53004 * 109.47208 * 180.27843 * 18 16 15 22 22 C 1.52998 * 109.47023 * 185.00002 * 21 18 16 23 23 C 1.50703 * 109.46948 * 180.02562 * 22 21 18 24 24 C 1.38271 * 119.98599 * 269.72610 * 23 22 21 25 25 C 1.38222 * 120.05276 * 179.72478 * 24 23 22 26 26 C 1.38221 * 120.02375 * 0.54495 * 25 24 23 27 27 C 1.38441 * 119.97205 * 359.72921 * 26 25 24 28 28 F 1.35106 * 120.02260 * 180.02562 * 27 26 25 29 29 C 1.38173 * 119.98892 * 89.99614 * 23 22 21 30 30 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 32 32 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 33 33 H 1.09002 * 109.46733 * 294.99544 * 4 2 1 34 34 H 1.09003 * 109.47212 * 54.99369 * 4 2 1 35 35 H 1.08994 * 109.47570 * 300.00116 * 5 4 2 36 36 H 1.09008 * 109.47295 * 60.00253 * 5 4 2 37 37 H 0.97004 * 119.99536 * 0.02562 * 6 5 4 38 38 H 0.97001 * 120.00389 * 179.97438 * 10 9 7 39 39 H 0.97000 * 120.00580 * 95.00360 * 15 2 1 40 40 H 1.09004 * 109.47239 * 60.00118 * 20 18 16 41 41 H 1.09005 * 109.47323 * 180.02562 * 20 18 16 42 42 H 1.09006 * 109.47458 * 299.99989 * 20 18 16 43 43 H 1.08998 * 109.46700 * 305.00017 * 21 18 16 44 44 H 1.09000 * 109.46893 * 64.99959 * 21 18 16 45 45 H 1.09005 * 109.47209 * 299.99293 * 22 21 18 46 46 H 1.08991 * 109.47437 * 59.99960 * 22 21 18 47 47 H 1.08000 * 119.97225 * 359.97438 * 24 23 22 48 48 H 1.08002 * 119.98683 * 180.27316 * 25 24 23 49 49 H 1.07997 * 120.01186 * 179.74540 * 26 25 24 50 50 H 1.08002 * 120.01571 * 359.97438 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 7 4.0532 -1.3040 -2.5099 7 6 5.3952 -1.3408 -2.7793 8 1 6.0938 -0.8608 -2.1099 9 6 5.8579 -1.9950 -3.9127 10 7 5.0068 -2.5805 -4.7283 11 14 7.6889 -2.0459 -4.2799 12 1 8.2879 -3.2473 -3.6450 13 1 7.8976 -2.1062 -5.7489 14 1 8.3365 -0.8245 -3.7376 15 7 2.0184 -0.6908 1.1960 16 6 2.1472 -0.0185 2.3570 17 8 1.8583 1.1582 2.4118 18 6 2.6437 -0.7305 3.5889 19 1 3.6437 -1.1227 3.4038 20 6 1.6978 -1.8846 3.9269 21 6 2.6899 0.2511 4.7616 22 6 3.3104 -0.4375 5.9789 23 6 3.3553 0.5292 7.1342 24 6 4.4648 1.3332 7.3197 25 6 4.5052 2.2244 8.3755 26 6 3.4408 2.3048 9.2537 27 6 2.3318 1.4962 9.0722 28 9 1.2907 1.5744 9.9297 29 6 2.2902 0.6078 8.0108 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.7517 -1.7714 -1.2058 34 1 1.6053 -0.2615 -2.1371 35 1 3.8531 0.4371 -1.3574 36 1 3.9995 -1.0727 -0.4262 37 1 3.4258 -1.7355 -3.1109 38 1 5.3300 -3.0373 -5.5206 39 1 2.2492 -1.6319 1.1524 40 1 1.6648 -2.5840 3.0915 41 1 2.0567 -2.3994 4.8182 42 1 0.6977 -1.4925 4.1122 43 1 3.2928 1.1167 4.4872 44 1 1.6779 0.5753 5.0041 45 1 2.7073 -1.3031 6.2533 46 1 4.3223 -0.7617 5.7364 47 1 5.2989 1.2677 6.6368 48 1 5.3705 2.8550 8.5169 49 1 3.4743 2.9982 10.0810 50 1 1.4253 -0.0231 7.8680 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668318673.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:22 Heat of formation + Delta-G solvation = -97.925766 kcal Electronic energy + Delta-G solvation = -27933.216518 eV Core-core repulsion = 23873.003626 eV Total energy + Delta-G solvation = -4060.212892 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.90830 -41.11508 -40.10449 -38.01716 -36.54058 -36.03729 -33.78669 -33.17866 -31.82901 -31.44945 -29.43273 -29.11002 -26.30522 -25.87003 -24.17814 -23.64475 -23.10558 -22.12575 -21.62777 -20.75123 -19.20080 -18.46053 -17.78598 -17.40314 -17.21568 -17.06621 -16.69788 -16.60894 -16.34890 -15.68240 -15.50411 -15.32639 -15.08530 -14.83711 -14.72183 -14.63467 -14.27134 -14.20466 -13.74380 -13.67352 -13.47731 -13.24104 -13.10028 -12.88811 -12.85952 -12.70541 -12.48857 -12.37984 -12.35868 -12.25806 -12.12113 -11.99433 -11.91554 -11.70093 -11.61453 -11.52355 -10.95004 -10.66300 -10.02208 -9.89212 -9.61025 -9.00919 -7.96016 -5.25084 0.19373 0.26554 1.47600 1.49086 1.57672 1.72866 2.27434 2.55395 2.64105 3.26360 3.37525 3.61582 3.64967 3.78934 3.84104 4.01430 4.04067 4.08713 4.17158 4.19240 4.30817 4.36762 4.39383 4.47086 4.55780 4.56248 4.62499 4.67079 4.76407 4.77298 4.86858 4.95749 4.99096 5.01429 5.03788 5.09397 5.13961 5.18298 5.23417 5.26866 5.33178 5.35782 5.41011 5.44465 5.48403 5.61766 5.62769 5.97114 6.26358 6.63953 7.32936 7.33608 8.08182 8.32163 9.27124 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014578 B = 0.001884 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.255472 B =14860.728976 C =16140.698689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.151 3.849 3 H 0.064 0.936 4 C -0.118 4.118 5 C 0.155 3.845 6 N -0.746 5.746 7 C -0.248 4.248 8 H 0.072 0.928 9 C -0.074 4.074 10 N -0.967 5.967 11 Si 0.973 3.027 12 H -0.284 1.284 13 H -0.295 1.295 14 H -0.272 1.272 15 N -0.713 5.713 16 C 0.512 3.488 17 O -0.587 6.587 18 C -0.106 4.106 19 H 0.116 0.884 20 C -0.143 4.143 21 C -0.086 4.086 22 C -0.077 4.077 23 C -0.057 4.057 24 C -0.134 4.134 25 C -0.090 4.090 26 C -0.168 4.168 27 C 0.074 3.926 28 F -0.153 7.153 29 C -0.161 4.161 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.004 0.996 36 H 0.026 0.974 37 H 0.375 0.625 38 H 0.252 0.748 39 H 0.411 0.589 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.145 0.855 48 H 0.156 0.844 49 H 0.146 0.854 50 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.605 3.358 28.073 29.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.046 3.954 3 H 0.083 0.917 4 C -0.157 4.157 5 C 0.028 3.972 6 N -0.388 5.388 7 C -0.379 4.379 8 H 0.090 0.910 9 C -0.267 4.267 10 N -0.617 5.617 11 Si 0.802 3.198 12 H -0.210 1.210 13 H -0.221 1.221 14 H -0.197 1.197 15 N -0.365 5.365 16 C 0.300 3.700 17 O -0.468 6.468 18 C -0.127 4.127 19 H 0.134 0.866 20 C -0.200 4.200 21 C -0.124 4.124 22 C -0.114 4.114 23 C -0.057 4.057 24 C -0.152 4.152 25 C -0.108 4.108 26 C -0.186 4.186 27 C 0.055 3.945 28 F -0.131 7.131 29 C -0.180 4.180 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.022 0.978 36 H 0.044 0.956 37 H 0.207 0.793 38 H 0.061 0.939 39 H 0.248 0.752 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.113 0.887 46 H 0.112 0.888 47 H 0.163 0.837 48 H 0.174 0.826 49 H 0.164 0.836 50 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.683 4.239 28.164 29.255 hybrid contribution 0.477 -0.293 -0.656 0.862 sum -6.205 3.946 27.509 28.475 Atomic orbital electron populations 1.22066 0.93834 1.02897 1.02195 1.20773 0.94704 0.96291 0.83670 0.91738 1.21891 0.94647 1.01734 0.97381 1.20753 0.93441 0.94070 0.88913 1.42567 1.04487 1.65255 1.26536 1.19596 0.85270 1.27693 1.05384 0.91002 1.25568 1.02042 1.01266 0.97818 1.69804 1.34573 1.41854 1.15516 0.85148 0.80085 0.78001 0.76573 1.21042 1.22138 1.19731 1.46115 1.66585 1.14626 1.09179 1.21269 0.76442 0.86806 0.85470 1.90670 1.52120 1.18084 1.85880 1.21370 1.02607 0.97323 0.91396 0.86603 1.21853 0.98327 0.96127 1.03704 1.21259 1.01240 0.97216 0.92728 1.20733 1.03491 0.96533 0.90655 1.19942 0.92993 0.97118 0.95637 1.21498 0.98848 0.96122 0.98703 1.21347 0.98313 0.97824 0.93344 1.21402 0.93468 1.01066 1.02688 1.18018 0.85921 0.99865 0.90736 1.91468 1.56876 1.95649 1.69153 1.21219 1.01005 1.00621 0.95129 0.91043 0.93308 0.90874 0.90229 0.90451 0.97759 0.95591 0.79270 0.93936 0.75231 0.91178 0.89066 0.92786 0.92763 0.92609 0.88727 0.88811 0.83732 0.82633 0.83586 0.84090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.48 71.98 0.68 -2.64 16 2 C 0.15 3.90 2.57 44.99 0.12 4.02 16 3 H 0.06 1.99 7.58 -2.38 -0.02 1.97 16 4 C -0.12 -3.46 4.87 30.59 0.15 -3.31 16 5 C 0.15 6.01 6.15 86.38 0.53 6.54 16 6 N -0.75 -37.34 5.60 -343.46 -1.92 -39.26 16 7 C -0.25 -13.79 9.99 84.03 0.84 -12.95 16 8 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 9 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 10 N -0.97 -58.38 13.06 21.65 0.28 -58.10 16 11 Si 0.97 45.64 29.55 68.60 2.03 47.67 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 14 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 15 N -0.71 -16.14 4.42 -442.52 -1.96 -18.09 16 16 C 0.51 12.47 7.12 87.66 0.62 13.10 16 17 O -0.59 -19.32 15.58 -3.04 -0.05 -19.37 16 18 C -0.11 -1.69 2.73 -11.54 -0.03 -1.72 16 19 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 20 C -0.14 -1.60 8.84 71.98 0.64 -0.97 16 21 C -0.09 -1.45 4.01 30.59 0.12 -1.32 16 22 C -0.08 -0.88 5.10 29.85 0.15 -0.73 16 23 C -0.06 -0.82 5.13 -19.87 -0.10 -0.93 16 24 C -0.13 -1.79 9.70 22.27 0.22 -1.58 16 25 C -0.09 -1.13 10.04 22.26 0.22 -0.91 16 26 C -0.17 -2.47 10.03 22.31 0.22 -2.25 16 27 C 0.07 1.33 7.30 22.38 0.16 1.49 16 28 F -0.15 -3.10 17.27 44.97 0.78 -2.32 16 29 C -0.16 -2.62 9.68 22.31 0.22 -2.41 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.00 0.18 8.14 -2.39 -0.02 0.17 16 36 H 0.03 0.98 7.75 -2.38 -0.02 0.96 16 37 H 0.38 19.75 7.67 -92.71 -0.71 19.04 16 38 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 39 H 0.41 7.63 8.01 -92.71 -0.74 6.89 16 40 H 0.07 0.70 7.55 -2.38 -0.02 0.69 16 41 H 0.09 0.65 6.56 -2.38 -0.02 0.64 16 42 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 43 H 0.05 1.13 7.95 -2.39 -0.02 1.11 16 44 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.09 0.79 6.51 -2.38 -0.02 0.78 16 46 H 0.09 0.83 8.08 -2.39 -0.02 0.81 16 47 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 48 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 49 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 50 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -72.01 414.38 3.87 -68.14 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: -0.52 Total: 31.67 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: 5.23 Total: -10.33 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -3.60 Total: -115.45 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.05 Total: -19.37 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.78 Total: -2.32 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -72.01 3.87 -68.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668318673.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.785 kcal (2) G-P(sol) polarization free energy of solvation -72.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds