Wall clock time and date at job start Tue Mar 31 2020 19:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46795 * 2 1 4 4 C 1.53003 * 109.47172 * 240.00180 * 2 1 3 5 5 C 1.50704 * 109.47087 * 64.99890 * 4 2 1 6 6 C 1.34670 * 126.58877 * 84.97392 * 5 4 2 7 7 N 1.34127 * 108.01757 * 180.02562 * 6 5 4 8 8 C 1.30505 * 109.25512 * 0.02562 * 7 6 5 9 9 N 1.35036 * 108.70122 * 359.97438 * 8 7 6 10 10 H 0.96997 * 126.40225 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.47220 * 119.99787 * 2 1 3 12 12 O 1.21280 * 119.99572 * 120.00276 * 11 2 1 13 13 N 1.34773 * 119.99989 * 300.00286 * 11 2 1 14 14 C 1.46498 * 119.99725 * 179.97438 * 13 11 2 15 15 C 1.52998 * 109.47154 * 175.67475 * 14 13 11 16 16 N 1.46503 * 109.54548 * 305.06059 * 15 14 13 17 17 C 1.36936 * 119.99791 * 301.75290 * 16 15 14 18 18 H 1.08006 * 120.00090 * 353.47173 * 17 16 15 19 19 C 1.38809 * 120.00499 * 173.46875 * 17 16 15 20 20 N 1.31611 * 120.00353 * 179.97438 * 19 17 16 21 21 Si 1.86808 * 119.99570 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46828 * 90.00214 * 21 19 17 23 23 H 1.48502 * 109.47036 * 210.00030 * 21 19 17 24 24 H 1.48495 * 109.47063 * 330.00372 * 21 19 17 25 25 C 1.53175 * 109.54606 * 184.88118 * 15 14 13 26 26 C 1.53105 * 109.15581 * 183.24312 * 25 15 14 27 27 O 1.42901 * 109.49339 * 57.47495 * 26 25 15 28 28 C 1.42902 * 114.09421 * 298.88901 * 27 26 25 29 29 C 1.53097 * 109.41664 * 61.15434 * 28 27 26 30 30 H 1.08994 * 109.47630 * 300.00052 * 1 2 3 31 31 H 1.09001 * 109.47181 * 60.00040 * 1 2 3 32 32 H 1.09001 * 109.46795 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47110 * 304.99804 * 4 2 1 34 34 H 1.08999 * 109.46822 * 184.99747 * 4 2 1 35 35 H 1.08002 * 125.99425 * 0.02562 * 6 5 4 36 36 H 1.08005 * 125.64562 * 180.02562 * 8 7 6 37 37 H 0.97002 * 119.99835 * 0.02562 * 13 11 2 38 38 H 1.08998 * 109.47391 * 295.67355 * 14 13 11 39 39 H 1.08995 * 109.47262 * 55.67648 * 14 13 11 40 40 H 0.96995 * 120.00345 * 121.74696 * 16 15 14 41 41 H 0.97006 * 120.00389 * 179.97438 * 20 19 17 42 42 H 1.08998 * 109.51938 * 303.05259 * 25 15 14 43 43 H 1.09000 * 109.52213 * 63.24593 * 25 15 14 44 44 H 1.09001 * 109.40825 * 297.48829 * 26 25 15 45 45 H 1.09001 * 109.49474 * 177.50962 * 26 25 15 46 46 H 1.09004 * 109.48354 * 301.17432 * 28 27 26 47 47 H 1.08998 * 109.49129 * 181.14326 * 28 27 26 48 48 H 1.08996 * 109.52534 * 182.48471 * 29 28 27 49 49 H 1.09001 * 109.56886 * 62.33150 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 6 2.3070 1.0933 -3.0214 7 7 1.6235 1.5048 -4.0996 8 6 0.5592 0.7632 -4.2433 9 7 0.5326 -0.1527 -3.2514 10 1 -0.1455 -0.8324 -3.1136 11 6 2.0324 -0.7104 1.2305 12 8 2.7297 -1.6964 1.1192 13 7 1.7068 -0.2499 2.4545 14 6 2.1947 -0.9408 3.6507 15 6 1.7756 -0.1595 4.8976 16 7 2.2448 1.2241 4.7897 17 6 3.5803 1.4840 4.6352 18 1 4.2980 0.6793 4.6983 19 6 4.0120 2.7817 4.3973 20 7 5.2957 3.0316 4.2492 21 14 2.7707 4.1734 4.2873 22 1 2.5593 4.7559 5.6369 23 1 3.2836 5.2227 3.3701 24 1 1.4827 3.6480 3.7676 25 6 2.3869 -0.8125 6.1410 26 6 1.8970 -0.0732 7.3890 27 8 0.4687 -0.0982 7.4281 28 6 -0.1567 0.5414 6.3137 29 6 0.2489 -0.1745 5.0226 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6055 -1.7197 -1.2952 34 1 3.1263 -0.7994 -1.2056 35 1 3.2295 1.5185 -2.6545 36 1 -0.1776 0.8647 -5.0264 37 1 1.1487 0.5385 2.5435 38 1 1.7691 -1.9435 3.6901 39 1 3.2819 -1.0088 3.6130 40 1 1.6095 1.9561 4.8277 41 1 5.5973 3.9383 4.0826 42 1 2.0784 -1.8566 6.1931 43 1 3.4740 -0.7552 6.0853 44 1 2.2417 0.9604 7.3565 45 1 2.2935 -0.5606 8.2797 46 1 0.1612 1.5830 6.2669 47 1 -1.2396 0.4967 6.4293 48 1 -0.1916 0.3386 4.1677 49 1 -0.1042 -1.2053 5.0503 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671949827.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:48 Heat of formation + Delta-G solvation = -20.843418 kcal Electronic energy + Delta-G solvation = -30420.418000 eV Core-core repulsion = 26383.467611 eV Total energy + Delta-G solvation = -4036.950389 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.17515 -39.92757 -39.05245 -36.08036 -34.92613 -33.54366 -32.50482 -32.21304 -30.81923 -30.16275 -29.86885 -27.00839 -26.50591 -24.01689 -23.68235 -22.94429 -21.90761 -21.63865 -20.77831 -19.64603 -18.60537 -17.99195 -17.90015 -16.92249 -15.85799 -15.77317 -15.53054 -15.34612 -15.07858 -14.73390 -14.48683 -14.43896 -14.26576 -13.73105 -13.65484 -13.44903 -13.30569 -12.98235 -12.75084 -12.67966 -12.45520 -12.25506 -12.14534 -11.99264 -11.57708 -11.40887 -11.16034 -11.07553 -11.02227 -10.98109 -10.45080 -10.20411 -10.11134 -10.07007 -9.92924 -9.71026 -9.47116 -9.21512 -8.95004 -8.52213 -8.44702 -7.44155 -5.87119 -3.26245 1.90692 2.96582 3.00322 3.07053 3.23120 3.27323 3.36606 3.61030 4.19993 4.46627 4.54323 4.69843 4.77304 4.82386 4.94371 5.02020 5.04562 5.13574 5.21434 5.30777 5.39345 5.40397 5.45410 5.52400 5.53808 5.55960 5.57507 5.73206 5.80748 5.91708 5.92307 5.96240 6.02121 6.10394 6.13451 6.21252 6.23345 6.40739 6.49211 6.57224 6.65167 6.65743 6.93493 7.22305 7.53777 7.84986 7.94250 7.95211 8.30287 8.61422 9.05735 9.77612 9.95340 11.30455 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012122 B = 0.003478 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.250848 B = 8047.737664 C = 9143.369337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 H 0.103 0.897 4 C -0.024 4.024 5 C -0.012 4.012 6 C -0.024 4.024 7 N -0.493 5.493 8 C 0.175 3.825 9 N -0.568 5.568 10 H 0.417 0.583 11 C 0.517 3.483 12 O -0.553 6.553 13 N -0.699 5.699 14 C 0.121 3.879 15 C 0.196 3.804 16 N -0.738 5.738 17 C -0.243 4.243 18 H 0.092 0.908 19 C 0.014 3.986 20 N -0.926 5.926 21 Si 0.876 3.124 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.278 1.278 25 C -0.154 4.154 26 C 0.069 3.931 27 O -0.391 6.391 28 C 0.066 3.934 29 C -0.155 4.155 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.170 0.830 36 H 0.205 0.795 37 H 0.398 0.602 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.360 0.640 41 H 0.260 0.740 42 H 0.058 0.942 43 H 0.083 0.917 44 H 0.065 0.935 45 H 0.083 0.917 46 H 0.051 0.949 47 H 0.084 0.916 48 H 0.068 0.932 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.759 -7.739 -7.629 18.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.121 0.879 4 C -0.063 4.063 5 C -0.128 4.128 6 C -0.171 4.171 7 N -0.212 5.212 8 C -0.109 4.109 9 N -0.172 5.172 10 H 0.255 0.745 11 C 0.303 3.697 12 O -0.431 6.431 13 N -0.349 5.349 14 C -0.005 4.005 15 C 0.104 3.896 16 N -0.382 5.382 17 C -0.372 4.372 18 H 0.110 0.890 19 C -0.183 4.183 20 N -0.573 5.573 21 Si 0.707 3.293 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.205 1.205 25 C -0.194 4.194 26 C -0.008 4.008 27 O -0.310 6.310 28 C -0.011 4.011 29 C -0.193 4.193 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.117 0.883 35 H 0.187 0.813 36 H 0.221 0.779 37 H 0.232 0.768 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.194 0.806 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.101 0.899 44 H 0.083 0.917 45 H 0.101 0.899 46 H 0.069 0.931 47 H 0.102 0.898 48 H 0.086 0.914 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.820 -7.832 -8.103 17.832 hybrid contribution -1.376 0.818 0.219 1.615 sum -15.196 -7.014 -7.884 18.500 Atomic orbital electron populations 1.21782 0.93466 1.02131 1.02574 1.21307 0.97161 1.01691 0.92855 0.87859 1.19841 1.02979 0.96687 0.86781 1.21317 0.90858 1.02518 0.98072 1.22191 1.02149 0.97543 0.95234 1.70286 1.05525 1.26714 1.18706 1.24925 1.00042 0.90573 0.95321 1.43326 1.21313 1.29035 1.23479 0.74549 1.20308 0.80245 0.84545 0.84621 1.90667 1.38441 1.27068 1.86945 1.45676 1.52539 1.31401 1.05245 1.21746 1.00524 0.93826 0.84401 1.19794 0.91064 0.86430 0.92298 1.42837 1.06020 1.00321 1.88978 1.18886 0.81980 0.94601 1.41781 0.89039 1.24647 0.95359 0.96941 1.01359 1.69680 1.12584 1.20037 1.54996 0.86713 0.81217 0.83632 0.77777 1.21164 1.21735 1.20463 1.22471 1.02620 0.98528 0.95793 1.22482 0.79764 1.01217 0.97323 1.87826 1.20171 1.78928 1.44044 1.22446 0.96958 0.95888 0.85846 1.22415 0.96625 1.01853 0.98440 0.91883 0.92059 0.92320 0.90617 0.88312 0.81262 0.77854 0.76767 0.92972 0.90713 0.80605 0.92952 0.92303 0.89882 0.91679 0.89925 0.93112 0.89768 0.91381 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.90 37.16 0.33 -1.03 16 2 C -0.11 -1.33 2.71 -91.77 -0.25 -1.58 16 3 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 4 C -0.02 -0.27 4.60 -27.88 -0.13 -0.40 16 5 C -0.01 -0.13 5.57 -81.60 -0.45 -0.59 16 6 C -0.02 -0.31 11.79 -17.81 -0.21 -0.52 16 7 N -0.49 -6.52 11.25 -14.66 -0.16 -6.68 16 8 C 0.17 1.63 13.04 -90.38 -1.18 0.45 16 9 N -0.57 -4.69 5.78 -10.30 -0.06 -4.75 16 10 H 0.42 2.13 8.96 -40.82 -0.37 1.77 16 11 C 0.52 8.26 7.15 -10.99 -0.08 8.18 16 12 O -0.55 -10.63 15.92 5.56 0.09 -10.54 16 13 N -0.70 -11.04 5.06 -60.30 -0.30 -11.34 16 14 C 0.12 2.04 4.30 -4.04 -0.02 2.03 16 15 C 0.20 3.19 0.41 -131.63 -0.05 3.13 16 16 N -0.74 -14.59 3.58 -47.06 -0.17 -14.76 16 17 C -0.24 -6.01 9.18 -15.06 -0.14 -6.15 16 18 H 0.09 2.52 6.99 -52.48 -0.37 2.15 16 19 C 0.01 0.36 5.50 -17.44 -0.10 0.27 16 20 N -0.93 -27.51 13.97 55.49 0.78 -26.74 16 21 Si 0.88 20.40 27.67 -169.99 -4.70 15.69 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -5.89 6.62 56.52 0.37 -5.51 16 25 C -0.15 -2.48 4.84 -26.59 -0.13 -2.61 16 26 C 0.07 1.09 6.68 37.21 0.25 1.34 16 27 O -0.39 -6.12 10.77 -35.23 -0.38 -6.50 16 28 C 0.07 0.91 6.67 37.21 0.25 1.15 16 29 C -0.16 -2.08 4.80 -26.59 -0.13 -2.21 16 30 H 0.06 0.59 7.56 -51.93 -0.39 0.20 16 31 H 0.06 0.54 7.07 -51.93 -0.37 0.18 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.10 1.28 7.95 -51.93 -0.41 0.87 16 35 H 0.17 2.10 8.06 -52.49 -0.42 1.68 16 36 H 0.20 1.06 8.06 -52.48 -0.42 0.63 16 37 H 0.40 5.89 6.72 -40.82 -0.27 5.61 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 1.52 7.50 -51.93 -0.39 1.13 16 40 H 0.36 7.11 4.63 -40.82 -0.19 6.92 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.08 1.49 7.17 -51.93 -0.37 1.12 16 44 H 0.06 1.17 7.75 -51.93 -0.40 0.77 16 45 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 46 H 0.05 0.75 7.06 -51.93 -0.37 0.39 16 47 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 48 H 0.07 0.83 7.20 -51.93 -0.37 0.46 16 49 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 387.12 15.07 5.83 5.83 Total: -1.00 -33.02 387.12 -8.78 -41.80 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: -7.66 Total: 16.52 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -2.03 Total: 1.47 kcal Atomic # 7 Polarization: -64.35 SS G_CDS: 0.08 Total: -64.27 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.29 Total: -17.04 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.70 Total: 15.69 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.02 -8.78 -41.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671949827.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.959 kcal (2) G-P(sol) polarization free energy of solvation -33.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds