Wall clock time and date at job start Tue Mar 31 2020 19:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46795 * 2 1 4 4 C 1.53003 * 109.47172 * 240.00180 * 2 1 3 5 5 C 1.50704 * 109.47087 * 64.99890 * 4 2 1 6 6 C 1.34670 * 126.58877 * 84.97392 * 5 4 2 7 7 N 1.34127 * 108.01757 * 180.02562 * 6 5 4 8 8 C 1.30505 * 109.25512 * 0.02562 * 7 6 5 9 9 N 1.35036 * 108.70122 * 359.97438 * 8 7 6 10 10 H 0.96997 * 126.40225 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.47220 * 119.99787 * 2 1 3 12 12 O 1.21280 * 119.99572 * 120.00276 * 11 2 1 13 13 N 1.34773 * 119.99989 * 300.00286 * 11 2 1 14 14 C 1.46498 * 119.99725 * 179.97438 * 13 11 2 15 15 C 1.52998 * 109.47154 * 175.67475 * 14 13 11 16 16 N 1.46503 * 109.54548 * 305.06059 * 15 14 13 17 17 C 1.36936 * 119.99791 * 301.75290 * 16 15 14 18 18 H 1.08006 * 120.00090 * 353.47173 * 17 16 15 19 19 C 1.38809 * 120.00499 * 173.46875 * 17 16 15 20 20 N 1.31611 * 120.00353 * 179.97438 * 19 17 16 21 21 Si 1.86808 * 119.99570 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46828 * 90.00214 * 21 19 17 23 23 H 1.48502 * 109.47036 * 210.00030 * 21 19 17 24 24 H 1.48495 * 109.47063 * 330.00372 * 21 19 17 25 25 C 1.53175 * 109.54606 * 184.88118 * 15 14 13 26 26 C 1.53105 * 109.15581 * 183.24312 * 25 15 14 27 27 O 1.42901 * 109.49339 * 57.47495 * 26 25 15 28 28 C 1.42902 * 114.09421 * 298.88901 * 27 26 25 29 29 C 1.53097 * 109.41664 * 61.15434 * 28 27 26 30 30 H 1.08994 * 109.47630 * 300.00052 * 1 2 3 31 31 H 1.09001 * 109.47181 * 60.00040 * 1 2 3 32 32 H 1.09001 * 109.46795 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47110 * 304.99804 * 4 2 1 34 34 H 1.08999 * 109.46822 * 184.99747 * 4 2 1 35 35 H 1.08002 * 125.99425 * 0.02562 * 6 5 4 36 36 H 1.08005 * 125.64562 * 180.02562 * 8 7 6 37 37 H 0.97002 * 119.99835 * 0.02562 * 13 11 2 38 38 H 1.08998 * 109.47391 * 295.67355 * 14 13 11 39 39 H 1.08995 * 109.47262 * 55.67648 * 14 13 11 40 40 H 0.96995 * 120.00345 * 121.74696 * 16 15 14 41 41 H 0.97006 * 120.00389 * 179.97438 * 20 19 17 42 42 H 1.08998 * 109.51938 * 303.05259 * 25 15 14 43 43 H 1.09000 * 109.52213 * 63.24593 * 25 15 14 44 44 H 1.09001 * 109.40825 * 297.48829 * 26 25 15 45 45 H 1.09001 * 109.49474 * 177.50962 * 26 25 15 46 46 H 1.09004 * 109.48354 * 301.17432 * 28 27 26 47 47 H 1.08998 * 109.49129 * 181.14326 * 28 27 26 48 48 H 1.08996 * 109.52534 * 182.48471 * 29 28 27 49 49 H 1.09001 * 109.56886 * 62.33150 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 6 2.3070 1.0933 -3.0214 7 7 1.6235 1.5048 -4.0996 8 6 0.5592 0.7632 -4.2433 9 7 0.5326 -0.1527 -3.2514 10 1 -0.1455 -0.8324 -3.1136 11 6 2.0324 -0.7104 1.2305 12 8 2.7297 -1.6964 1.1192 13 7 1.7068 -0.2499 2.4545 14 6 2.1947 -0.9408 3.6507 15 6 1.7756 -0.1595 4.8976 16 7 2.2448 1.2241 4.7897 17 6 3.5803 1.4840 4.6352 18 1 4.2980 0.6793 4.6983 19 6 4.0120 2.7817 4.3973 20 7 5.2957 3.0316 4.2492 21 14 2.7707 4.1734 4.2873 22 1 2.5593 4.7559 5.6369 23 1 3.2836 5.2227 3.3701 24 1 1.4827 3.6480 3.7676 25 6 2.3869 -0.8125 6.1410 26 6 1.8970 -0.0732 7.3890 27 8 0.4687 -0.0982 7.4281 28 6 -0.1567 0.5414 6.3137 29 6 0.2489 -0.1745 5.0226 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6055 -1.7197 -1.2952 34 1 3.1263 -0.7994 -1.2056 35 1 3.2295 1.5185 -2.6545 36 1 -0.1776 0.8647 -5.0264 37 1 1.1487 0.5385 2.5435 38 1 1.7691 -1.9435 3.6901 39 1 3.2819 -1.0088 3.6130 40 1 1.6095 1.9561 4.8277 41 1 5.5973 3.9383 4.0826 42 1 2.0784 -1.8566 6.1931 43 1 3.4740 -0.7552 6.0853 44 1 2.2417 0.9604 7.3565 45 1 2.2935 -0.5606 8.2797 46 1 0.1612 1.5830 6.2669 47 1 -1.2396 0.4967 6.4293 48 1 -0.1916 0.3386 4.1677 49 1 -0.1042 -1.2053 5.0503 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671949827.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:47 Heat of formation + Delta-G solvation = -44.517438 kcal Electronic energy + Delta-G solvation = -30421.444582 eV Core-core repulsion = 26383.467611 eV Total energy + Delta-G solvation = -4037.976971 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.99046 -41.24231 -40.32379 -37.44268 -35.98919 -35.14356 -33.92574 -33.28492 -32.01893 -31.67174 -31.00850 -28.29483 -27.34855 -25.72534 -24.86453 -24.25242 -23.12918 -22.44187 -21.70375 -20.86189 -20.02068 -19.80296 -18.83070 -18.05472 -17.18777 -17.05334 -16.75694 -16.47434 -16.34051 -16.16171 -15.76058 -15.60936 -15.34956 -14.95832 -14.81255 -14.66911 -14.40667 -14.30263 -14.13831 -13.88468 -13.61756 -13.46413 -13.23557 -13.15536 -12.95117 -12.90266 -12.68853 -12.30897 -12.19589 -12.12687 -12.12224 -11.73764 -11.56086 -11.17510 -10.99229 -10.93935 -10.92060 -10.74090 -10.38357 -9.91425 -9.33214 -9.29534 -7.96393 -5.31683 1.09552 1.35656 1.40631 1.48698 1.71634 2.17202 2.24280 2.44150 2.50703 3.04045 3.34342 3.46072 3.62998 3.80472 3.83599 3.87986 3.90370 3.97841 4.09006 4.19214 4.22790 4.31099 4.42143 4.48570 4.57355 4.63437 4.70254 4.70591 4.76275 4.77916 4.79126 4.86317 4.88204 5.00584 5.07490 5.08032 5.16637 5.18089 5.25692 5.28088 5.35413 5.59029 5.76692 5.84746 6.25399 6.33720 6.61114 6.65723 7.12153 7.15146 7.33335 7.83464 8.03794 9.25014 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012122 B = 0.003478 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.250848 B = 8047.737664 C = 9143.369337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.101 4.101 3 H 0.094 0.906 4 C -0.016 4.016 5 C -0.007 4.007 6 C -0.054 4.054 7 N -0.540 5.540 8 C 0.193 3.807 9 N -0.552 5.552 10 H 0.435 0.565 11 C 0.512 3.488 12 O -0.590 6.590 13 N -0.696 5.696 14 C 0.128 3.872 15 C 0.192 3.808 16 N -0.733 5.733 17 C -0.204 4.204 18 H 0.052 0.948 19 C -0.059 4.059 20 N -0.985 5.985 21 Si 0.940 3.060 22 H -0.286 1.286 23 H -0.309 1.309 24 H -0.237 1.237 25 C -0.152 4.152 26 C 0.075 3.925 27 O -0.394 6.394 28 C 0.059 3.941 29 C -0.146 4.146 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.157 0.843 36 H 0.247 0.753 37 H 0.405 0.595 38 H 0.070 0.930 39 H 0.028 0.972 40 H 0.366 0.634 41 H 0.253 0.747 42 H 0.081 0.919 43 H 0.052 0.948 44 H 0.038 0.962 45 H 0.099 0.901 46 H 0.040 0.960 47 H 0.119 0.881 48 H 0.088 0.912 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.698 -8.468 -8.253 22.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.122 4.122 3 H 0.112 0.888 4 C -0.055 4.055 5 C -0.124 4.124 6 C -0.201 4.201 7 N -0.259 5.259 8 C -0.091 4.091 9 N -0.157 5.157 10 H 0.277 0.723 11 C 0.299 3.701 12 O -0.471 6.471 13 N -0.345 5.345 14 C 0.002 3.998 15 C 0.102 3.898 16 N -0.377 5.377 17 C -0.335 4.335 18 H 0.070 0.930 19 C -0.250 4.250 20 N -0.636 5.636 21 Si 0.768 3.232 22 H -0.212 1.212 23 H -0.237 1.237 24 H -0.161 1.161 25 C -0.193 4.193 26 C -0.002 4.002 27 O -0.313 6.313 28 C -0.017 4.017 29 C -0.184 4.184 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.175 0.825 36 H 0.263 0.737 37 H 0.242 0.758 38 H 0.088 0.912 39 H 0.047 0.953 40 H 0.201 0.799 41 H 0.062 0.938 42 H 0.099 0.901 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.117 0.883 46 H 0.058 0.942 47 H 0.137 0.863 48 H 0.107 0.893 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -18.855 -8.609 -8.706 22.482 hybrid contribution 0.184 0.897 0.421 1.007 sum -18.672 -7.713 -8.285 21.835 Atomic orbital electron populations 1.21758 0.90536 1.03333 1.03536 1.21276 0.99463 1.00403 0.91083 0.88784 1.19682 1.01630 0.97277 0.86884 1.20997 0.91618 1.01805 0.97939 1.22214 1.02671 0.98897 0.96298 1.70248 1.07405 1.28838 1.19456 1.25722 0.99191 0.88927 0.95272 1.43224 1.20777 1.29164 1.22529 0.72344 1.20993 0.79404 0.84114 0.85542 1.90650 1.40004 1.28953 1.87500 1.45662 1.52394 1.31514 1.04965 1.21576 0.97874 0.95147 0.85195 1.20017 0.93812 0.84145 0.91832 1.42730 1.03998 1.02344 1.88609 1.18687 0.83644 0.93053 1.38103 0.92964 1.25374 0.97006 0.99827 1.02800 1.69884 1.15279 1.20048 1.58395 0.85646 0.80455 0.79788 0.77286 1.21234 1.23670 1.16075 1.22433 1.00744 1.00027 0.96049 1.22364 0.80462 0.99617 0.97747 1.87835 1.19358 1.79057 1.45067 1.22683 0.98724 0.95081 0.85259 1.22388 0.93234 1.03526 0.99256 0.91130 0.90876 0.90984 0.89509 0.90711 0.82529 0.73674 0.75846 0.91186 0.95310 0.79919 0.93830 0.90051 0.92931 0.94395 0.88334 0.94203 0.86348 0.89308 0.88639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 8.90 71.98 0.64 -1.47 16 2 C -0.10 -2.36 2.71 -11.54 -0.03 -2.39 16 3 H 0.09 2.41 8.14 -2.39 -0.02 2.40 16 4 C -0.02 -0.35 4.60 29.85 0.14 -0.21 16 5 C -0.01 -0.15 5.57 40.95 0.23 0.08 16 6 C -0.05 -1.41 11.79 83.52 0.98 -0.42 16 7 N -0.54 -13.75 11.25 -200.31 -2.25 -16.00 16 8 C 0.19 3.03 13.04 180.26 2.35 5.38 16 9 N -0.55 -7.49 5.78 -186.49 -1.08 -8.57 16 10 H 0.44 2.72 8.96 -92.71 -0.83 1.89 16 11 C 0.51 16.10 7.15 87.66 0.63 16.73 16 12 O -0.59 -23.03 15.92 -3.03 -0.05 -23.08 16 13 N -0.70 -21.12 5.06 -463.08 -2.34 -23.46 16 14 C 0.13 4.28 4.30 86.38 0.37 4.65 16 15 C 0.19 5.99 0.41 3.72 0.00 5.99 16 16 N -0.73 -28.40 3.58 -302.80 -1.08 -29.48 16 17 C -0.20 -10.40 9.18 84.03 0.77 -9.63 16 18 H 0.05 3.07 6.99 -2.91 -0.02 3.05 16 19 C -0.06 -3.26 5.50 84.86 0.47 -2.79 16 20 N -0.99 -61.56 13.97 21.65 0.30 -61.25 16 21 Si 0.94 42.30 27.67 68.60 1.90 44.20 16 22 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.31 -14.82 7.11 99.48 0.71 -14.11 16 24 H -0.24 -8.91 6.62 99.48 0.66 -8.25 16 25 C -0.15 -4.82 4.84 30.69 0.15 -4.67 16 26 C 0.07 2.29 6.68 72.02 0.48 2.77 16 27 O -0.39 -11.15 10.77 -148.98 -1.60 -12.76 16 28 C 0.06 1.39 6.67 72.01 0.48 1.87 16 29 C -0.15 -3.32 4.80 30.69 0.15 -3.17 16 30 H 0.07 1.03 7.56 -2.39 -0.02 1.01 16 31 H 0.07 1.01 7.07 -2.39 -0.02 0.99 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.07 2.04 7.95 -2.39 -0.02 2.02 16 35 H 0.16 4.23 8.06 -2.91 -0.02 4.21 16 36 H 0.25 1.44 8.06 -2.91 -0.02 1.42 16 37 H 0.41 10.96 6.72 -92.71 -0.62 10.34 16 38 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.03 1.22 7.50 -2.39 -0.02 1.20 16 40 H 0.37 13.56 4.63 -92.71 -0.43 13.13 16 41 H 0.25 15.33 8.31 -92.70 -0.77 14.56 16 42 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.05 1.97 7.17 -2.39 -0.02 1.96 16 44 H 0.04 1.36 7.75 -2.39 -0.02 1.34 16 45 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 46 H 0.04 1.04 7.06 -2.39 -0.02 1.02 16 47 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 48 H 0.09 1.70 7.20 -2.39 -0.02 1.68 16 49 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -77.14 387.12 0.65 -76.48 By element: Atomic # 1 Polarization: 42.15 SS G_CDS: -0.95 Total: 41.21 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 7.81 Total: 12.71 kcal Atomic # 7 Polarization: -132.31 SS G_CDS: -6.45 Total: -138.76 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -1.65 Total: -35.83 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 1.90 Total: 44.20 kcal Total: -77.14 0.65 -76.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671949827.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.966 kcal (2) G-P(sol) polarization free energy of solvation -77.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds