Wall clock time and date at job start Tue Mar 31 2020 19:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46942 * 2 1 4 4 C 1.52997 * 109.47090 * 239.99961 * 2 1 3 5 5 C 1.50695 * 109.47262 * 64.99874 * 4 2 1 6 6 C 1.34669 * 126.59301 * 274.68253 * 5 4 2 7 7 N 1.34129 * 108.02348 * 179.87422 * 6 5 4 8 8 C 1.30502 * 109.25550 * 0.40411 * 7 6 5 9 9 N 1.35045 * 108.69738 * 359.74888 * 8 7 6 10 10 H 0.97007 * 126.39757 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47010 * 119.99793 * 2 1 3 12 12 O 1.21282 * 120.00127 * 120.00332 * 11 2 1 13 13 N 1.34773 * 119.99858 * 299.99935 * 11 2 1 14 14 C 1.46501 * 119.99842 * 185.05180 * 13 11 2 15 15 C 1.53002 * 109.50281 * 298.57093 * 14 13 11 16 16 O 1.42902 * 109.46845 * 300.56338 * 15 14 13 17 17 C 1.53039 * 109.49557 * 58.63532 * 14 13 11 18 18 C 1.53040 * 109.54025 * 58.58625 * 17 14 13 19 19 C 1.53194 * 109.31291 * 61.36422 * 18 17 14 20 20 N 1.46927 * 108.77364 * 305.36691 * 19 18 17 21 21 C 1.36941 * 120.62808 * 233.58780 * 20 19 18 22 22 H 1.08000 * 120.00340 * 30.51592 * 21 20 19 23 23 C 1.38813 * 119.99496 * 210.51928 * 21 20 19 24 24 N 1.31617 * 120.00341 * 12.30185 * 23 21 20 25 25 Si 1.86807 * 119.99821 * 192.29651 * 23 21 20 26 26 H 1.48502 * 109.46664 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47072 * 119.99851 * 25 23 21 28 28 H 1.48496 * 109.47161 * 240.00134 * 25 23 21 29 29 C 1.46921 * 118.73941 * 53.61032 * 20 19 18 30 30 H 1.09003 * 109.47665 * 300.00085 * 1 2 3 31 31 H 1.09006 * 109.47132 * 60.00457 * 1 2 3 32 32 H 1.08998 * 109.46942 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47047 * 185.00088 * 4 2 1 34 34 H 1.09005 * 109.47181 * 304.99789 * 4 2 1 35 35 H 1.08000 * 125.98668 * 0.02886 * 6 5 4 36 36 H 1.07997 * 125.65035 * 179.73522 * 8 7 6 37 37 H 0.96998 * 120.00414 * 5.05719 * 13 11 2 38 38 H 1.08994 * 109.46744 * 60.55647 * 15 14 13 39 39 H 1.08996 * 109.47488 * 180.56377 * 15 14 13 40 40 H 0.96699 * 113.99918 * 179.97438 * 16 15 14 41 41 H 1.09000 * 109.46387 * 298.56358 * 17 14 13 42 42 H 1.09003 * 109.45049 * 178.59723 * 17 14 13 43 43 H 1.08999 * 109.50253 * 181.31898 * 18 17 14 44 44 H 1.09005 * 109.49820 * 301.41255 * 18 17 14 45 45 H 1.08998 * 109.58713 * 65.15708 * 19 18 17 46 46 H 1.09002 * 109.58467 * 185.58293 * 19 18 17 47 47 H 0.97005 * 119.99636 * 180.02562 * 24 23 21 48 48 H 1.09007 * 109.58798 * 186.60062 * 29 20 19 49 49 H 1.08996 * 109.70348 * 66.24859 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0570 -2.4765 6 6 0.4687 -0.0254 -3.1336 7 7 0.5106 0.8296 -4.1662 8 6 1.6680 1.4324 -4.1791 9 7 2.4038 0.9791 -3.1414 10 1 3.3046 1.2551 -2.9105 11 6 2.0323 -0.7104 1.2305 12 8 2.7296 -1.6964 1.1193 13 7 1.7067 -0.2498 2.4545 14 6 2.2836 -0.8722 3.6486 15 6 1.8623 -2.3417 3.7129 16 8 0.4367 -2.4268 3.7602 17 6 3.8100 -0.7808 3.5854 18 6 4.2312 0.6872 3.4873 19 6 3.7533 1.4360 4.7354 20 7 2.3058 1.2321 4.8838 21 6 1.4596 2.3017 5.0065 22 1 1.7031 3.2403 4.5311 23 6 0.2888 2.1795 5.7422 24 7 0.1043 1.1312 6.5164 25 14 -1.0251 3.5029 5.6334 26 1 -0.5783 4.5683 4.7003 27 1 -2.2892 2.9055 5.1331 28 1 -1.2523 4.0867 6.9797 29 6 1.7837 -0.1411 4.8986 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1263 -0.7995 -1.2055 34 1 1.6054 -1.7198 -1.2951 35 1 -0.3611 -0.6657 -2.8730 36 1 1.9849 2.1711 -4.9004 37 1 1.0903 0.4937 2.5449 38 1 2.2283 -2.8635 2.8288 39 1 2.2836 -2.8017 4.6068 40 1 0.0978 -3.3315 3.8019 41 1 4.1703 -1.3213 2.7101 42 1 4.2376 -1.2218 4.4859 43 1 5.3172 0.7503 3.4187 44 1 3.7836 1.1356 2.6003 45 1 4.2689 1.0483 5.6140 46 1 3.9631 2.5000 4.6259 47 1 -0.7141 1.0457 7.0301 48 1 0.6939 -0.1178 4.8969 49 1 2.1365 -0.6589 5.7905 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672499437.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:08 Heat of formation + Delta-G solvation = -37.169918 kcal Electronic energy + Delta-G solvation = -31183.279052 eV Core-core repulsion = 27145.620693 eV Total energy + Delta-G solvation = -4037.658359 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.95574 -41.46744 -39.15718 -37.34863 -35.95880 -35.34711 -34.17150 -33.36119 -32.04183 -31.51112 -30.27946 -27.53499 -27.31560 -26.61811 -24.73526 -23.94418 -22.50514 -22.19621 -21.72395 -20.93831 -20.01844 -18.82979 -18.71844 -18.15232 -17.90843 -16.98095 -16.44830 -16.38922 -15.95629 -15.80218 -15.49477 -15.33159 -15.03630 -14.89303 -14.76304 -14.49178 -14.35505 -14.11171 -13.95527 -13.75668 -13.47029 -13.44028 -13.02553 -12.99867 -12.84197 -12.75023 -12.52915 -12.24603 -12.18748 -12.07681 -11.93418 -11.67168 -11.46417 -11.17660 -11.02838 -10.91015 -10.89199 -10.54702 -10.25710 -9.74353 -9.26233 -8.61894 -7.83842 -5.33871 1.13358 1.47285 1.50703 1.58961 1.80650 2.20874 2.28693 2.48668 2.52168 3.31694 3.37220 3.63389 3.69439 3.88151 3.93570 3.99791 4.12081 4.14764 4.26319 4.30948 4.37866 4.43734 4.46412 4.51436 4.65097 4.66821 4.78832 4.82896 4.83382 4.86704 4.91704 4.96610 4.99155 5.12521 5.14314 5.21514 5.27628 5.33657 5.39803 5.49723 5.65291 5.79089 5.80768 5.82871 6.43341 6.60734 6.82341 6.95985 7.17371 7.17457 7.41737 7.86466 8.40384 9.21272 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011287 B = 0.003851 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.230970 B = 7269.634346 C = 8196.650017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 H 0.098 0.902 4 C -0.011 4.011 5 C -0.016 4.016 6 C -0.042 4.042 7 N -0.538 5.538 8 C 0.188 3.812 9 N -0.558 5.558 10 H 0.433 0.567 11 C 0.520 3.480 12 O -0.574 6.574 13 N -0.686 5.686 14 C 0.159 3.841 15 C 0.074 3.926 16 O -0.578 6.578 17 C -0.114 4.114 18 C -0.115 4.115 19 C 0.139 3.861 20 N -0.603 5.603 21 C -0.259 4.259 22 H 0.068 0.932 23 C -0.040 4.040 24 N -0.929 5.929 25 Si 0.960 3.040 26 H -0.265 1.265 27 H -0.292 1.292 28 H -0.297 1.297 29 C 0.193 3.807 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.169 0.831 36 H 0.243 0.757 37 H 0.401 0.599 38 H 0.064 0.936 39 H 0.047 0.953 40 H 0.387 0.613 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.078 0.922 44 H 0.053 0.947 45 H 0.012 0.988 46 H 0.055 0.945 47 H 0.248 0.752 48 H 0.070 0.930 49 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.608 -3.235 -16.191 17.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 H 0.116 0.884 4 C -0.050 4.050 5 C -0.132 4.132 6 C -0.189 4.189 7 N -0.258 5.258 8 C -0.096 4.096 9 N -0.163 5.163 10 H 0.274 0.726 11 C 0.307 3.693 12 O -0.456 6.456 13 N -0.334 5.334 14 C 0.071 3.929 15 C -0.005 4.005 16 O -0.385 6.385 17 C -0.153 4.153 18 C -0.154 4.154 19 C 0.014 3.986 20 N -0.326 5.326 21 C -0.389 4.389 22 H 0.085 0.915 23 C -0.237 4.237 24 N -0.575 5.575 25 Si 0.789 3.211 26 H -0.189 1.189 27 H -0.219 1.219 28 H -0.224 1.224 29 C 0.066 3.934 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.186 0.814 36 H 0.259 0.741 37 H 0.236 0.764 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.235 0.765 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.096 0.904 44 H 0.072 0.928 45 H 0.030 0.970 46 H 0.073 0.927 47 H 0.057 0.943 48 H 0.088 0.912 49 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges 6.370 -3.146 -16.729 18.175 hybrid contribution -0.215 0.266 1.463 1.502 sum 6.155 -2.881 -15.266 16.710 Atomic orbital electron populations 1.21782 0.92319 1.02796 1.02820 1.21190 0.98257 1.00522 0.91667 0.88388 1.19666 1.01726 0.97174 0.86440 1.21173 0.94121 0.98638 0.99276 1.22270 0.98348 1.02975 0.95348 1.70262 1.21339 1.11471 1.22735 1.25663 0.87918 1.02338 0.93708 1.43310 1.17218 1.32235 1.23507 0.72641 1.20797 0.79521 0.84053 0.84887 1.90557 1.40630 1.27186 1.87204 1.45838 1.46952 1.35951 1.04703 1.21011 0.93539 0.91261 0.87070 1.22525 0.81397 0.96387 1.00219 1.86536 1.20916 1.33489 1.97546 1.21679 0.93489 0.97830 1.02265 1.21788 1.00241 0.94805 0.98530 1.21099 0.84416 0.98239 0.94895 1.44220 1.01493 1.01903 1.85012 1.19451 1.01545 0.92930 1.24986 0.91465 1.25778 1.02171 0.99356 0.96365 1.70135 1.26468 1.31267 1.29600 0.85326 0.79418 0.79387 0.77013 1.18922 1.21923 1.22391 1.20607 0.99181 0.83362 0.90212 0.92966 0.90403 0.91999 0.90220 0.89293 0.81367 0.74141 0.76424 0.91769 0.93451 0.76473 0.90662 0.91789 0.90385 0.92819 0.96962 0.92660 0.94252 0.91170 0.98213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.77 71.98 0.63 -2.61 16 2 C -0.09 -2.21 2.72 -11.54 -0.03 -2.24 16 3 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 4 C -0.01 -0.22 4.59 29.85 0.14 -0.09 16 5 C -0.02 -0.30 6.08 40.95 0.25 -0.05 16 6 C -0.04 -0.96 10.12 83.52 0.84 -0.11 16 7 N -0.54 -12.77 11.25 -200.31 -2.25 -15.02 16 8 C 0.19 3.00 13.04 180.26 2.35 5.35 16 9 N -0.56 -8.15 6.15 -186.49 -1.15 -9.30 16 10 H 0.43 3.68 8.96 -92.70 -0.83 2.85 16 11 C 0.52 15.63 6.54 87.66 0.57 16.20 16 12 O -0.57 -19.08 12.18 -3.04 -0.04 -19.11 16 13 N -0.69 -23.48 3.96 -422.57 -1.67 -25.15 16 14 C 0.16 5.87 0.45 3.68 0.00 5.87 16 15 C 0.07 2.51 5.75 71.98 0.41 2.92 16 16 O -0.58 -19.95 12.98 -148.98 -1.93 -21.88 16 17 C -0.11 -3.80 4.45 30.62 0.14 -3.66 16 18 C -0.11 -3.71 5.93 30.67 0.18 -3.53 16 19 C 0.14 5.47 6.52 86.36 0.56 6.03 16 20 N -0.60 -28.34 2.90 -699.09 -2.02 -30.37 16 21 C -0.26 -13.33 9.58 84.03 0.81 -12.53 16 22 H 0.07 3.38 7.86 -2.91 -0.02 3.36 16 23 C -0.04 -2.16 5.02 84.86 0.43 -1.73 16 24 N -0.93 -53.24 11.08 21.65 0.24 -53.00 16 25 Si 0.96 43.36 29.57 68.60 2.03 45.39 16 26 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 27 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 28 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 29 C 0.19 8.91 3.76 86.36 0.32 9.23 16 30 H 0.05 1.35 7.46 -2.39 -0.02 1.33 16 31 H 0.08 1.68 6.20 -2.38 -0.01 1.67 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 1.60 7.95 -2.39 -0.02 1.58 16 34 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.17 3.52 8.03 -2.91 -0.02 3.49 16 36 H 0.24 1.67 8.06 -2.91 -0.02 1.65 16 37 H 0.40 14.92 7.75 -92.71 -0.72 14.20 16 38 H 0.06 2.15 6.12 -2.39 -0.01 2.14 16 39 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.39 9.38 9.12 -74.06 -0.68 8.71 16 41 H 0.07 2.47 6.29 -2.39 -0.02 2.45 16 42 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.05 1.77 7.51 -2.38 -0.02 1.75 16 45 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.05 2.12 7.93 -2.39 -0.02 2.10 16 47 H 0.25 13.96 8.31 -92.70 -0.77 13.18 16 48 H 0.07 3.76 5.83 -2.38 -0.01 3.75 16 49 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 Total: -1.00 -69.31 383.25 -0.43 -69.74 By element: Atomic # 1 Polarization: 40.89 SS G_CDS: -1.23 Total: 39.66 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 7.61 Total: 19.05 kcal Atomic # 7 Polarization: -125.98 SS G_CDS: -6.86 Total: -132.84 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -1.97 Total: -40.99 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -69.31 -0.43 -69.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672499437.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.565 kcal (2) G-P(sol) polarization free energy of solvation -69.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds