Wall clock time and date at job start Tue Mar 31 2020 19:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47119 * 2 1 4 4 C 1.53001 * 109.47300 * 120.00121 * 2 1 3 5 5 C 1.50697 * 109.47154 * 294.99939 * 4 2 1 6 6 C 1.34672 * 126.59417 * 274.69055 * 5 4 2 7 7 N 1.34126 * 108.02426 * 179.87286 * 6 5 4 8 8 C 1.30498 * 109.25374 * 0.39531 * 7 6 5 9 9 N 1.35044 * 108.70290 * 359.75278 * 8 7 6 10 10 H 0.97007 * 126.40060 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.47168 * 240.00217 * 2 1 3 12 12 O 1.21278 * 120.00031 * 240.00192 * 11 2 1 13 13 N 1.34774 * 120.00249 * 59.99678 * 11 2 1 14 14 C 1.46495 * 120.00542 * 174.95276 * 13 11 2 15 15 C 1.53004 * 109.49688 * 302.40436 * 14 13 11 16 16 O 1.42904 * 109.46549 * 302.29748 * 15 14 13 17 17 C 1.53041 * 109.49470 * 62.46501 * 14 13 11 18 18 C 1.53043 * 109.53924 * 58.59116 * 17 14 13 19 19 C 1.53190 * 109.31466 * 61.36199 * 18 17 14 20 20 N 1.46930 * 108.77595 * 305.37076 * 19 18 17 21 21 C 1.36937 * 120.62365 * 233.60842 * 20 19 18 22 22 H 1.07999 * 119.99385 * 152.43363 * 21 20 19 23 23 C 1.38813 * 120.00582 * 332.42776 * 21 20 19 24 24 N 1.31616 * 120.00171 * 160.34319 * 23 21 20 25 25 Si 1.86798 * 119.99663 * 340.34647 * 23 21 20 26 26 H 1.48495 * 109.47523 * 95.08235 * 25 23 21 27 27 H 1.48501 * 109.46911 * 215.08324 * 25 23 21 28 28 H 1.48504 * 109.47281 * 335.07916 * 25 23 21 29 29 C 1.46925 * 118.73943 * 53.60269 * 20 19 18 30 30 H 1.09003 * 109.47273 * 300.00177 * 1 2 3 31 31 H 1.09000 * 109.47443 * 59.99909 * 1 2 3 32 32 H 1.08998 * 109.47119 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46919 * 174.99937 * 4 2 1 34 34 H 1.09003 * 109.46965 * 55.00009 * 4 2 1 35 35 H 1.08004 * 125.98425 * 0.02562 * 6 5 4 36 36 H 1.07998 * 125.65233 * 179.73569 * 8 7 6 37 37 H 0.97010 * 119.99972 * 354.95433 * 13 11 2 38 38 H 1.08991 * 109.47172 * 62.29776 * 15 14 13 39 39 H 1.09000 * 109.46555 * 182.30177 * 15 14 13 40 40 H 0.96704 * 113.99556 * 179.97438 * 16 15 14 41 41 H 1.09002 * 109.45880 * 178.61115 * 17 14 13 42 42 H 1.09000 * 109.46403 * 298.56567 * 17 14 13 43 43 H 1.08997 * 109.49871 * 181.31937 * 18 17 14 44 44 H 1.08998 * 109.49673 * 301.40947 * 18 17 14 45 45 H 1.09008 * 109.58330 * 65.15293 * 19 18 17 46 46 H 1.08994 * 109.58655 * 185.57806 * 19 18 17 47 47 H 0.96998 * 119.99655 * 180.02562 * 24 23 21 48 48 H 1.09000 * 109.58131 * 186.60573 * 29 20 19 49 49 H 1.09005 * 109.58417 * 66.18725 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 6 2.3103 1.0891 3.0251 7 7 1.6244 1.5036 4.1006 8 6 0.5602 0.7621 4.2443 9 7 0.5328 -0.1530 3.2516 10 1 -0.1456 -0.8326 3.1137 11 6 2.0323 -0.7104 -1.2305 12 8 2.7296 -1.6964 -1.1193 13 7 1.7067 -0.2500 -2.4546 14 6 2.2836 -0.8723 -3.6487 15 6 3.8102 -0.8040 -3.5733 16 8 4.2203 0.5592 -3.4482 17 6 1.8410 -2.3353 -3.7266 18 6 0.3128 -2.4062 -3.7681 19 6 -0.1943 -1.6805 -5.0183 20 7 0.3468 -0.3145 -5.0243 21 6 -0.4864 0.7654 -5.1457 22 1 -0.2012 1.7176 -4.7233 23 6 -1.6975 0.6363 -5.8116 24 7 -2.6563 1.5153 -5.6101 25 14 -1.9665 -0.7848 -6.9936 26 1 -2.6454 -1.8981 -6.2830 27 1 -2.8123 -0.3324 -8.1273 28 1 -0.6557 -1.2538 -7.5104 29 6 1.7989 -0.1293 -4.8975 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1263 -0.7995 1.2055 34 1 1.6054 -1.7198 1.2951 35 1 3.2355 1.5110 2.6611 36 1 -0.1764 0.8632 5.0275 37 1 1.0903 0.4937 -2.5450 38 1 4.1569 -1.3687 -2.7079 39 1 4.2381 -1.2304 -4.4806 40 1 5.1785 0.6783 -3.3945 41 1 2.2503 -2.7910 -4.6282 42 1 2.2058 -2.8722 -2.8509 43 1 -0.0023 -3.4492 -3.7999 44 1 -0.0979 -1.9287 -2.8785 45 1 0.1414 -2.2104 -5.9098 46 1 -1.2835 -1.6420 -5.0019 47 1 -3.5026 1.4248 -6.0752 48 1 2.0247 0.9327 -4.8015 49 1 2.2970 -0.5326 -5.7792 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672499452.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:24 Heat of formation + Delta-G solvation = -8.449830 kcal Electronic energy + Delta-G solvation = -31054.626925 eV Core-core repulsion = 27018.213962 eV Total energy + Delta-G solvation = -4036.412963 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.18556 -40.31189 -37.98358 -36.23887 -34.95853 -33.99268 -32.57650 -32.31635 -30.91134 -30.64590 -29.48804 -26.45755 -25.81549 -25.23052 -23.83126 -22.10480 -21.69169 -21.44344 -20.84977 -19.77697 -18.83948 -17.97307 -17.10113 -16.92829 -16.80236 -15.57514 -15.40702 -15.35290 -15.10758 -14.60741 -14.39336 -14.03546 -13.88160 -13.68619 -13.49449 -13.48412 -13.30052 -13.16619 -12.72333 -12.57268 -12.31826 -12.25897 -12.08671 -11.78370 -11.55740 -11.43941 -11.30214 -11.14877 -10.83806 -10.67790 -10.27579 -10.12575 -10.09272 -10.02616 -9.85257 -9.74379 -9.51089 -9.21397 -8.66895 -8.55646 -8.45497 -7.05086 -6.01653 -3.39202 1.90101 2.93736 2.97718 3.04566 3.27364 3.44418 3.46320 3.53769 4.38216 4.46974 4.52718 4.69290 4.78498 4.85871 4.87613 5.03701 5.21396 5.24397 5.28051 5.37504 5.41263 5.48898 5.51029 5.54357 5.58243 5.71331 5.73169 5.76116 5.83063 5.99367 6.04261 6.12206 6.14479 6.20307 6.24525 6.27033 6.38814 6.54200 6.59670 6.61814 6.69515 6.83933 7.01160 7.21914 7.77524 7.88034 7.93249 7.99675 8.24475 8.58272 8.85742 9.64560 10.01478 11.13786 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013344 B = 0.003562 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.820550 B = 7857.999776 C = 8905.931933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 H 0.100 0.900 4 C -0.023 4.023 5 C -0.011 4.011 6 C -0.027 4.027 7 N -0.495 5.495 8 C 0.177 3.823 9 N -0.566 5.566 10 H 0.419 0.581 11 C 0.523 3.477 12 O -0.557 6.557 13 N -0.687 5.687 14 C 0.166 3.834 15 C 0.066 3.934 16 O -0.564 6.564 17 C -0.121 4.121 18 C -0.128 4.128 19 C 0.124 3.876 20 N -0.604 5.604 21 C -0.263 4.263 22 H 0.087 0.913 23 C 0.027 3.973 24 N -0.907 5.907 25 Si 0.884 3.116 26 H -0.290 1.290 27 H -0.304 1.304 28 H -0.270 1.270 29 C 0.151 3.849 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.168 0.832 36 H 0.205 0.795 37 H 0.410 0.590 38 H 0.065 0.935 39 H 0.046 0.954 40 H 0.371 0.629 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.053 0.947 44 H 0.063 0.937 45 H 0.025 0.975 46 H 0.071 0.929 47 H 0.263 0.737 48 H 0.077 0.923 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.168 -6.254 13.088 17.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 H 0.118 0.882 4 C -0.062 4.062 5 C -0.127 4.127 6 C -0.174 4.174 7 N -0.214 5.214 8 C -0.106 4.106 9 N -0.170 5.170 10 H 0.256 0.744 11 C 0.309 3.691 12 O -0.437 6.437 13 N -0.337 5.337 14 C 0.077 3.923 15 C -0.013 4.013 16 O -0.368 6.368 17 C -0.159 4.159 18 C -0.167 4.167 19 C -0.002 4.002 20 N -0.327 5.327 21 C -0.391 4.391 22 H 0.104 0.896 23 C -0.172 4.172 24 N -0.549 5.549 25 Si 0.715 3.285 26 H -0.218 1.218 27 H -0.233 1.233 28 H -0.195 1.195 29 C 0.024 3.976 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.185 0.815 36 H 0.222 0.778 37 H 0.246 0.754 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.217 0.783 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.043 0.957 46 H 0.089 0.911 47 H 0.072 0.928 48 H 0.095 0.905 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 9.097 -6.048 13.575 17.425 hybrid contribution -0.677 -1.507 -1.371 2.147 sum 8.421 -7.555 12.205 16.642 Atomic orbital electron populations 1.21811 0.92877 1.02449 1.03202 1.21299 0.97721 1.01159 0.92573 0.88183 1.19832 1.02452 0.96905 0.86986 1.21311 0.90806 1.02583 0.97987 1.22104 1.02053 0.97760 0.95524 1.70269 1.05599 1.26617 1.18871 1.24928 0.99986 0.90419 0.95299 1.43355 1.21313 1.29047 1.23252 0.74380 1.20343 0.79982 0.84135 0.84661 1.90576 1.39748 1.26390 1.87016 1.45815 1.47057 1.36479 1.04326 1.20907 0.89978 0.94100 0.87272 1.22612 0.95103 0.83235 1.00378 1.86522 1.27024 1.26167 1.97093 1.21769 0.96917 0.94980 1.02269 1.21911 0.94942 0.99300 1.00558 1.21376 0.98348 0.85864 0.94567 1.44364 1.01030 1.01829 1.85499 1.18887 0.98657 0.90830 1.30718 0.89568 1.25257 0.96442 0.97032 0.98518 1.69815 1.04176 1.37489 1.43466 0.86943 0.77648 0.82147 0.81810 1.21830 1.23278 1.19453 1.21117 0.84982 0.99360 0.92142 0.92181 0.90890 0.92370 0.88705 0.90631 0.81502 0.77814 0.75414 0.91729 0.93582 0.78312 0.92064 0.90426 0.92879 0.91844 0.95664 0.91140 0.92753 0.90508 0.94679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.90 37.16 0.33 -1.35 16 2 C -0.11 -1.24 2.72 -91.77 -0.25 -1.49 16 3 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 4 C -0.02 -0.24 4.59 -27.88 -0.13 -0.37 16 5 C -0.01 -0.11 5.57 -81.60 -0.45 -0.57 16 6 C -0.03 -0.31 11.79 -17.81 -0.21 -0.52 16 7 N -0.49 -6.20 11.25 -14.66 -0.16 -6.36 16 8 C 0.18 1.63 13.04 -90.38 -1.18 0.46 16 9 N -0.57 -4.74 5.78 -10.30 -0.06 -4.80 16 10 H 0.42 2.39 8.96 -40.82 -0.37 2.03 16 11 C 0.52 7.56 6.57 -10.99 -0.07 7.48 16 12 O -0.56 -9.01 12.20 5.56 0.07 -8.94 16 13 N -0.69 -10.73 3.93 -47.50 -0.19 -10.92 16 14 C 0.17 2.66 0.45 -131.70 -0.06 2.60 16 15 C 0.07 0.92 5.66 37.16 0.21 1.13 16 16 O -0.56 -7.65 13.02 -35.23 -0.46 -8.11 16 17 C -0.12 -1.93 4.51 -26.69 -0.12 -2.05 16 18 C -0.13 -2.23 5.93 -26.61 -0.16 -2.39 16 19 C 0.12 2.58 4.18 -3.71 -0.02 2.57 16 20 N -0.60 -13.31 2.64 -172.32 -0.46 -13.76 16 21 C -0.26 -6.86 10.04 -15.06 -0.15 -7.01 16 22 H 0.09 2.40 8.06 -52.49 -0.42 1.97 16 23 C 0.03 0.74 5.25 -17.43 -0.09 0.65 16 24 N -0.91 -26.72 13.97 55.49 0.78 -25.94 16 25 Si 0.88 21.77 24.34 -169.99 -4.14 17.63 16 26 H -0.29 -6.97 6.72 56.52 0.38 -6.59 16 27 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 28 H -0.27 -6.52 6.40 56.52 0.36 -6.16 16 29 C 0.15 2.83 5.04 -3.71 -0.02 2.81 16 30 H 0.06 0.64 7.07 -51.93 -0.37 0.27 16 31 H 0.07 0.97 7.46 -51.93 -0.39 0.58 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 1.03 7.95 -51.93 -0.41 0.62 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.17 1.73 8.06 -52.48 -0.42 1.31 16 36 H 0.21 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.41 6.88 7.71 -40.82 -0.31 6.57 16 38 H 0.06 0.95 6.24 -51.93 -0.32 0.62 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.37 3.31 9.12 45.56 0.42 3.73 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.08 1.27 6.22 -51.93 -0.32 0.94 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.06 1.15 7.53 -51.93 -0.39 0.76 16 45 H 0.03 0.53 6.95 -51.92 -0.36 0.17 16 46 H 0.07 1.62 4.51 -51.93 -0.23 1.39 16 47 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 48 H 0.08 1.51 7.71 -51.93 -0.40 1.11 16 49 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 378.53 15.07 5.70 5.70 Total: -1.00 -32.97 378.53 -8.17 -41.14 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -6.89 Total: 12.41 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -2.37 Total: 1.95 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: -0.09 Total: -61.79 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.39 Total: -17.04 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.14 Total: 17.63 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.97 -8.17 -41.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672499452.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.695 kcal (2) G-P(sol) polarization free energy of solvation -32.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds