Wall clock time and date at job start Tue Mar 31 2020 19:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47119 * 2 1 4 4 C 1.53001 * 109.47300 * 120.00121 * 2 1 3 5 5 C 1.50697 * 109.47154 * 294.99939 * 4 2 1 6 6 C 1.34672 * 126.59417 * 274.69055 * 5 4 2 7 7 N 1.34126 * 108.02426 * 179.87286 * 6 5 4 8 8 C 1.30498 * 109.25374 * 0.39531 * 7 6 5 9 9 N 1.35044 * 108.70290 * 359.75278 * 8 7 6 10 10 H 0.97007 * 126.40060 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.47168 * 240.00217 * 2 1 3 12 12 O 1.21278 * 120.00031 * 240.00192 * 11 2 1 13 13 N 1.34774 * 120.00249 * 59.99678 * 11 2 1 14 14 C 1.46495 * 120.00542 * 174.95276 * 13 11 2 15 15 C 1.53004 * 109.49688 * 302.40436 * 14 13 11 16 16 O 1.42904 * 109.46549 * 302.29748 * 15 14 13 17 17 C 1.53041 * 109.49470 * 62.46501 * 14 13 11 18 18 C 1.53043 * 109.53924 * 58.59116 * 17 14 13 19 19 C 1.53190 * 109.31466 * 61.36199 * 18 17 14 20 20 N 1.46930 * 108.77595 * 305.37076 * 19 18 17 21 21 C 1.36937 * 120.62365 * 233.60842 * 20 19 18 22 22 H 1.07999 * 119.99385 * 152.43363 * 21 20 19 23 23 C 1.38813 * 120.00582 * 332.42776 * 21 20 19 24 24 N 1.31616 * 120.00171 * 160.34319 * 23 21 20 25 25 Si 1.86798 * 119.99663 * 340.34647 * 23 21 20 26 26 H 1.48495 * 109.47523 * 95.08235 * 25 23 21 27 27 H 1.48501 * 109.46911 * 215.08324 * 25 23 21 28 28 H 1.48504 * 109.47281 * 335.07916 * 25 23 21 29 29 C 1.46925 * 118.73943 * 53.60269 * 20 19 18 30 30 H 1.09003 * 109.47273 * 300.00177 * 1 2 3 31 31 H 1.09000 * 109.47443 * 59.99909 * 1 2 3 32 32 H 1.08998 * 109.47119 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46919 * 174.99937 * 4 2 1 34 34 H 1.09003 * 109.46965 * 55.00009 * 4 2 1 35 35 H 1.08004 * 125.98425 * 0.02562 * 6 5 4 36 36 H 1.07998 * 125.65233 * 179.73569 * 8 7 6 37 37 H 0.97010 * 119.99972 * 354.95433 * 13 11 2 38 38 H 1.08991 * 109.47172 * 62.29776 * 15 14 13 39 39 H 1.09000 * 109.46555 * 182.30177 * 15 14 13 40 40 H 0.96704 * 113.99556 * 179.97438 * 16 15 14 41 41 H 1.09002 * 109.45880 * 178.61115 * 17 14 13 42 42 H 1.09000 * 109.46403 * 298.56567 * 17 14 13 43 43 H 1.08997 * 109.49871 * 181.31937 * 18 17 14 44 44 H 1.08998 * 109.49673 * 301.40947 * 18 17 14 45 45 H 1.09008 * 109.58330 * 65.15293 * 19 18 17 46 46 H 1.08994 * 109.58655 * 185.57806 * 19 18 17 47 47 H 0.96998 * 119.99655 * 180.02562 * 24 23 21 48 48 H 1.09000 * 109.58131 * 186.60573 * 29 20 19 49 49 H 1.09005 * 109.58417 * 66.18725 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 6 2.3103 1.0891 3.0251 7 7 1.6244 1.5036 4.1006 8 6 0.5602 0.7621 4.2443 9 7 0.5328 -0.1530 3.2516 10 1 -0.1456 -0.8326 3.1137 11 6 2.0323 -0.7104 -1.2305 12 8 2.7296 -1.6964 -1.1193 13 7 1.7067 -0.2500 -2.4546 14 6 2.2836 -0.8723 -3.6487 15 6 3.8102 -0.8040 -3.5733 16 8 4.2203 0.5592 -3.4482 17 6 1.8410 -2.3353 -3.7266 18 6 0.3128 -2.4062 -3.7681 19 6 -0.1943 -1.6805 -5.0183 20 7 0.3468 -0.3145 -5.0243 21 6 -0.4864 0.7654 -5.1457 22 1 -0.2012 1.7176 -4.7233 23 6 -1.6975 0.6363 -5.8116 24 7 -2.6563 1.5153 -5.6101 25 14 -1.9665 -0.7848 -6.9936 26 1 -2.6454 -1.8981 -6.2830 27 1 -2.8123 -0.3324 -8.1273 28 1 -0.6557 -1.2538 -7.5104 29 6 1.7989 -0.1293 -4.8975 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1263 -0.7995 1.2055 34 1 1.6054 -1.7198 1.2951 35 1 3.2355 1.5110 2.6611 36 1 -0.1764 0.8632 5.0275 37 1 1.0903 0.4937 -2.5450 38 1 4.1569 -1.3687 -2.7079 39 1 4.2381 -1.2304 -4.4806 40 1 5.1785 0.6783 -3.3945 41 1 2.2503 -2.7910 -4.6282 42 1 2.2058 -2.8722 -2.8509 43 1 -0.0023 -3.4492 -3.7999 44 1 -0.0979 -1.9287 -2.8785 45 1 0.1414 -2.2104 -5.9098 46 1 -1.2835 -1.6420 -5.0019 47 1 -3.5026 1.4248 -6.0752 48 1 2.0247 0.9327 -4.8015 49 1 2.2970 -0.5326 -5.7792 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672499452.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:23 Heat of formation + Delta-G solvation = -32.805470 kcal Electronic energy + Delta-G solvation = -31055.683064 eV Core-core repulsion = 27018.213962 eV Total energy + Delta-G solvation = -4037.469102 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.95772 -41.55236 -39.31622 -37.47718 -35.98248 -35.46559 -34.03745 -33.27260 -32.67394 -31.83200 -30.52643 -27.42509 -27.32532 -26.76621 -24.88041 -23.75326 -22.86561 -22.42600 -21.81554 -20.92349 -20.08600 -18.78532 -18.72718 -18.16768 -18.05083 -17.23157 -16.81533 -16.41224 -16.10776 -15.64509 -15.57290 -15.41640 -15.19317 -15.09848 -14.68180 -14.61729 -14.45104 -14.30999 -14.10142 -13.75662 -13.65652 -13.46316 -13.31587 -13.24124 -13.09303 -12.93524 -12.49738 -12.28292 -12.17253 -12.08415 -11.97455 -11.64105 -11.42882 -11.33985 -10.97807 -10.91851 -10.89318 -10.73415 -10.31943 -9.79349 -9.27295 -8.91728 -8.13905 -5.46531 1.13328 1.30758 1.43038 1.50450 1.77882 2.20036 2.27453 2.42879 2.44687 3.07879 3.27098 3.36475 3.61501 3.86536 3.89136 3.94479 4.00057 4.03115 4.18322 4.23991 4.25822 4.36177 4.41531 4.49150 4.58764 4.63763 4.66307 4.72596 4.75930 4.78144 4.79281 4.84412 4.88719 4.98382 5.02820 5.10066 5.12091 5.18567 5.27443 5.38751 5.39965 5.73650 5.81867 5.88283 6.14503 6.59921 6.74558 6.90774 6.96497 7.17152 7.37575 7.62843 8.03122 9.05212 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013344 B = 0.003562 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.820550 B = 7857.999776 C = 8905.931933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.098 4.098 3 H 0.101 0.899 4 C -0.010 4.010 5 C -0.012 4.012 6 C -0.048 4.048 7 N -0.538 5.538 8 C 0.187 3.813 9 N -0.557 5.557 10 H 0.432 0.568 11 C 0.524 3.476 12 O -0.570 6.570 13 N -0.692 5.692 14 C 0.165 3.835 15 C 0.075 3.925 16 O -0.580 6.580 17 C -0.114 4.114 18 C -0.119 4.119 19 C 0.120 3.880 20 N -0.612 5.612 21 C -0.240 4.240 22 H 0.058 0.942 23 C -0.029 4.029 24 N -0.954 5.954 25 Si 0.941 3.059 26 H -0.280 1.280 27 H -0.317 1.317 28 H -0.259 1.259 29 C 0.153 3.847 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.169 0.831 36 H 0.242 0.758 37 H 0.401 0.599 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.392 0.608 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.051 0.949 45 H 0.034 0.966 46 H 0.048 0.952 47 H 0.259 0.741 48 H 0.061 0.939 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.172 -8.359 13.813 19.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.119 4.119 3 H 0.119 0.881 4 C -0.049 4.049 5 C -0.128 4.128 6 C -0.196 4.196 7 N -0.258 5.258 8 C -0.097 4.097 9 N -0.161 5.161 10 H 0.273 0.727 11 C 0.311 3.689 12 O -0.451 6.451 13 N -0.341 5.341 14 C 0.077 3.923 15 C -0.005 4.005 16 O -0.387 6.387 17 C -0.153 4.153 18 C -0.158 4.158 19 C -0.005 4.005 20 N -0.336 5.336 21 C -0.370 4.370 22 H 0.076 0.924 23 C -0.224 4.224 24 N -0.601 5.601 25 Si 0.772 3.228 26 H -0.208 1.208 27 H -0.247 1.247 28 H -0.183 1.183 29 C 0.028 3.972 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.186 0.814 36 H 0.258 0.742 37 H 0.236 0.764 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.241 0.759 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.070 0.930 45 H 0.052 0.948 46 H 0.066 0.934 47 H 0.068 0.932 48 H 0.079 0.921 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.159 -8.205 14.308 19.371 hybrid contribution -0.918 -0.789 -1.515 1.940 sum 9.241 -8.994 12.793 18.164 Atomic orbital electron populations 1.21721 0.92657 1.02475 1.02627 1.21247 0.97688 1.01026 0.91953 0.88110 1.19676 1.02157 0.96781 0.86309 1.21164 0.91368 1.02281 0.98035 1.22298 1.02682 0.98567 0.96006 1.70251 1.07248 1.28418 1.19838 1.25646 0.99453 0.89158 0.95417 1.43330 1.21033 1.29156 1.22627 0.72714 1.20687 0.79463 0.83898 0.84828 1.90566 1.40342 1.27030 1.87184 1.45879 1.47082 1.36317 1.04838 1.20879 0.91560 0.93788 0.86066 1.22465 0.93336 0.83532 1.01122 1.86478 1.29227 1.25914 1.97127 1.21725 0.95626 0.94783 1.03125 1.21802 0.96009 0.99937 0.98079 1.21415 0.97103 0.85354 0.96585 1.44406 1.02130 1.01439 1.85647 1.18809 0.98637 0.91017 1.28510 0.92439 1.25806 0.96583 0.99624 1.00434 1.69940 1.04791 1.40104 1.45228 0.86001 0.77683 0.79785 0.79370 1.20755 1.24665 1.18310 1.21169 0.82946 0.99095 0.94014 0.91085 0.93060 0.91999 0.89072 0.90262 0.81364 0.74240 0.76371 0.92038 0.91712 0.75895 0.90514 0.90158 0.90604 0.92991 0.94849 0.93417 0.93156 0.92051 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.90 71.98 0.64 -2.42 16 2 C -0.10 -2.19 2.72 -11.54 -0.03 -2.22 16 3 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 4 C -0.01 -0.20 4.59 29.85 0.14 -0.06 16 5 C -0.01 -0.23 5.57 40.95 0.23 0.00 16 6 C -0.05 -1.11 11.79 83.52 0.98 -0.12 16 7 N -0.54 -12.96 11.25 -200.31 -2.25 -15.21 16 8 C 0.19 3.06 13.04 180.26 2.35 5.41 16 9 N -0.56 -8.15 5.78 -186.49 -1.08 -9.23 16 10 H 0.43 3.82 8.96 -92.70 -0.83 2.99 16 11 C 0.52 14.52 6.57 87.66 0.58 15.10 16 12 O -0.57 -17.37 12.20 -3.02 -0.04 -17.40 16 13 N -0.69 -21.10 3.93 -422.59 -1.66 -22.76 16 14 C 0.17 5.01 0.45 3.68 0.00 5.01 16 15 C 0.07 1.91 5.66 71.98 0.41 2.32 16 16 O -0.58 -14.66 13.02 -148.98 -1.94 -16.60 16 17 C -0.11 -3.33 4.51 30.62 0.14 -3.19 16 18 C -0.12 -3.88 5.93 30.67 0.18 -3.70 16 19 C 0.12 4.80 4.18 86.36 0.36 5.16 16 20 N -0.61 -26.58 2.64 -699.09 -1.85 -28.43 16 21 C -0.24 -12.74 10.04 84.03 0.84 -11.90 16 22 H 0.06 3.33 8.06 -2.91 -0.02 3.31 16 23 C -0.03 -1.65 5.25 84.86 0.45 -1.21 16 24 N -0.95 -57.94 13.97 21.65 0.30 -57.63 16 25 Si 0.94 45.20 24.34 68.60 1.67 46.87 16 26 H -0.28 -12.86 6.72 99.48 0.67 -12.20 16 27 H -0.32 -15.78 7.11 99.48 0.71 -15.07 16 28 H -0.26 -11.80 6.40 99.48 0.64 -11.16 16 29 C 0.15 5.57 5.04 86.36 0.43 6.00 16 30 H 0.07 1.42 7.07 -2.39 -0.02 1.40 16 31 H 0.05 1.37 7.46 -2.39 -0.02 1.36 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 33 H 0.09 1.87 7.95 -2.39 -0.02 1.85 16 34 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.17 3.53 8.06 -2.91 -0.02 3.50 16 36 H 0.24 1.79 8.06 -2.91 -0.02 1.77 16 37 H 0.40 13.63 7.71 -92.70 -0.71 12.91 16 38 H 0.06 1.65 6.24 -2.39 -0.01 1.63 16 39 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 40 H 0.39 6.13 9.12 -74.05 -0.68 5.45 16 41 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.08 2.37 6.22 -2.39 -0.01 2.36 16 43 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.05 1.81 7.53 -2.39 -0.02 1.79 16 45 H 0.03 1.30 6.95 -2.38 -0.02 1.28 16 46 H 0.05 2.13 4.51 -2.39 -0.01 2.12 16 47 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 48 H 0.06 2.41 7.71 -2.39 -0.02 2.39 16 49 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 Total: -1.00 -71.53 378.53 -0.48 -72.01 By element: Atomic # 1 Polarization: 35.55 SS G_CDS: -1.33 Total: 34.21 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: 7.70 Total: 14.17 kcal Atomic # 7 Polarization: -126.73 SS G_CDS: -6.54 Total: -133.27 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -1.98 Total: -34.00 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.67 Total: 46.87 kcal Total: -71.53 -0.48 -72.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672499452.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.202 kcal (2) G-P(sol) polarization free energy of solvation -71.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds