Wall clock time and date at job start Tue Mar 31 2020 19:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.46912 * 2 1 4 4 C 1.52999 * 109.47523 * 119.99829 * 2 1 3 5 5 C 1.50700 * 109.47340 * 295.00362 * 4 2 1 6 6 C 1.34665 * 126.58972 * 85.01911 * 5 4 2 7 7 N 1.34129 * 108.01992 * 179.97438 * 6 5 4 8 8 C 1.30499 * 109.25449 * 359.97438 * 7 6 5 9 9 N 1.35048 * 108.70141 * 359.77176 * 8 7 6 10 10 H 0.96999 * 126.40258 * 180.26740 * 9 8 7 11 11 C 1.50704 * 109.47065 * 240.00097 * 2 1 3 12 12 O 1.21275 * 120.00230 * 263.88102 * 11 2 1 13 13 N 1.34776 * 119.99838 * 83.88187 * 11 2 1 14 14 C 1.46929 * 120.62944 * 175.48799 * 13 11 2 15 15 C 1.53199 * 108.77150 * 233.58527 * 14 13 11 16 16 C 1.53034 * 109.31376 * 305.36266 * 15 14 13 17 17 O 1.42902 * 109.46138 * 301.35949 * 16 15 14 18 18 C 1.52998 * 109.45845 * 181.38678 * 16 15 14 19 19 N 1.46501 * 109.47122 * 184.99967 * 18 16 15 20 20 C 1.36934 * 120.00297 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99907 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00523 * 180.02562 * 20 19 18 23 23 N 1.31619 * 119.99371 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00212 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47261 * 90.00241 * 24 22 20 26 26 H 1.48498 * 109.47206 * 209.99706 * 24 22 20 27 27 H 1.48497 * 109.47164 * 329.99868 * 24 22 20 28 28 C 1.53042 * 109.53952 * 61.36698 * 16 15 14 29 29 C 1.46929 * 120.63197 * 355.46410 * 13 11 2 30 30 H 1.08999 * 109.47185 * 186.35861 * 1 2 3 31 31 H 1.09000 * 109.47351 * 306.35720 * 1 2 3 32 32 H 1.08994 * 109.47483 * 66.35850 * 1 2 3 33 33 H 1.09007 * 109.46463 * 55.00306 * 4 2 1 34 34 H 1.08996 * 109.47275 * 174.99941 * 4 2 1 35 35 H 1.08000 * 125.99583 * 359.96950 * 6 5 4 36 36 H 1.08000 * 125.65132 * 180.02562 * 8 7 6 37 37 H 1.08993 * 109.58835 * 113.79984 * 14 13 11 38 38 H 1.08998 * 109.58418 * 353.36898 * 14 13 11 39 39 H 1.09001 * 109.49249 * 185.40871 * 15 14 13 40 40 H 1.08997 * 109.49783 * 65.31826 * 15 14 13 41 41 H 0.96700 * 113.99951 * 180.02562 * 17 16 15 42 42 H 1.08999 * 109.47385 * 305.00121 * 18 16 15 43 43 H 1.09000 * 109.47095 * 64.99977 * 18 16 15 44 44 H 0.97001 * 120.00073 * 0.02562 * 19 18 16 45 45 H 0.97001 * 119.99799 * 180.02562 * 23 22 20 46 46 H 1.09005 * 109.49373 * 58.58420 * 28 16 15 47 47 H 1.08997 * 109.49939 * 178.68377 * 28 16 15 48 48 H 1.08999 * 109.58374 * 246.20019 * 29 13 11 49 49 H 1.08993 * 109.58725 * 6.62528 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0570 2.4766 6 6 0.4667 -0.0214 3.1303 7 7 0.5107 0.8295 4.1662 8 6 1.6683 1.4319 4.1795 9 7 2.4062 0.9746 3.1449 10 1 3.3088 1.2470 2.9169 11 6 2.0323 -0.7104 -1.2305 12 8 2.3400 -1.8820 -1.1712 13 7 2.1396 -0.0437 -2.3969 14 6 2.7196 -0.6937 -3.5801 15 6 3.8524 0.1852 -4.1198 16 6 3.3197 1.5968 -4.3760 17 8 2.2398 1.5359 -5.3100 18 6 4.4397 2.4683 -4.9477 19 7 3.9651 3.8478 -5.0813 20 6 4.8000 4.8144 -5.5750 21 1 5.8083 4.5596 -5.8663 22 6 4.3506 6.1217 -5.7011 23 7 3.1220 6.4322 -5.3455 24 14 5.4894 7.4400 -6.3753 25 1 5.3452 7.5109 -7.8516 26 1 5.1339 8.7530 -5.7797 27 1 6.8942 7.1041 -6.0306 28 6 2.8227 2.2027 -3.0614 29 6 1.6784 1.3468 -2.5096 30 1 -0.3633 -1.0213 0.1138 31 1 -0.3634 0.6092 0.8276 32 1 -0.3634 0.4121 -0.9413 33 1 1.6054 -1.7198 1.2951 34 1 3.1263 -0.7994 1.2055 35 1 -0.3652 -0.6578 2.8668 36 1 1.9854 2.1704 4.9009 37 1 1.9524 -0.8116 -4.3452 38 1 3.1155 -1.6707 -3.3030 39 1 4.2275 -0.2369 -5.0521 40 1 4.6596 0.2281 -3.3886 41 1 1.8526 2.3967 -5.5202 42 1 5.2984 2.4428 -4.2768 43 1 4.7320 2.0882 -5.9266 44 1 3.0596 4.0768 -4.8193 45 1 2.8077 7.3457 -5.4339 46 1 3.6397 2.2266 -2.3401 47 1 2.4650 3.2166 -3.2404 48 1 0.8262 1.3952 -3.1875 49 1 1.3872 1.7160 -1.5263 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674100532.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:22 Heat of formation + Delta-G solvation = -22.302765 kcal Electronic energy + Delta-G solvation = -29908.786276 eV Core-core repulsion = 25871.772605 eV Total energy + Delta-G solvation = -4037.013671 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.32847 -40.55116 -38.69767 -35.60538 -35.31211 -34.10134 -32.74289 -32.03712 -31.30678 -30.38744 -29.87853 -26.96191 -26.78630 -24.51301 -23.39736 -23.19833 -21.86533 -21.45095 -21.01653 -20.08983 -18.88354 -18.21360 -17.57243 -17.22523 -16.10750 -15.92108 -15.51883 -15.12158 -15.02457 -14.78758 -14.57358 -14.23745 -14.03244 -13.95767 -13.90904 -13.56497 -13.33826 -13.03038 -12.96339 -12.75237 -12.58624 -12.33143 -12.28574 -11.94269 -11.67556 -11.58345 -11.28836 -11.13595 -11.10890 -11.05883 -10.89413 -10.37325 -10.27564 -10.23675 -10.19156 -9.77326 -9.71786 -9.46715 -9.01338 -8.62089 -8.59314 -7.08145 -5.90447 -3.19597 1.74942 2.53260 2.79954 2.90334 3.01386 3.35627 3.41484 3.42465 4.19603 4.46036 4.46655 4.48373 4.52069 4.64195 4.70859 4.81727 4.94260 5.03600 5.05169 5.08702 5.14664 5.26706 5.35744 5.41206 5.44376 5.47727 5.52064 5.55092 5.59953 5.73539 5.77757 5.83072 5.89036 5.94397 5.96780 6.03870 6.05349 6.26926 6.31663 6.47731 6.51370 6.62029 6.63618 7.08984 7.35895 7.58915 7.80505 8.01120 8.08271 8.28401 9.39487 9.92677 10.26987 11.32278 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012488 B = 0.002721 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.598583 B =10289.594150 C =11813.430163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 H 0.093 0.907 4 C -0.025 4.025 5 C -0.018 4.018 6 C -0.021 4.021 7 N -0.495 5.495 8 C 0.182 3.818 9 N -0.567 5.567 10 H 0.420 0.580 11 C 0.520 3.480 12 O -0.548 6.548 13 N -0.604 5.604 14 C 0.118 3.882 15 C -0.116 4.116 16 C 0.130 3.870 17 O -0.561 6.561 18 C 0.128 3.872 19 N -0.730 5.730 20 C -0.242 4.242 21 H 0.070 0.930 22 C -0.011 4.011 23 N -0.934 5.934 24 Si 0.908 3.092 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 C -0.157 4.157 29 C 0.109 3.891 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.168 0.832 36 H 0.207 0.793 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.383 0.617 42 H 0.025 0.975 43 H 0.029 0.971 44 H 0.381 0.619 45 H 0.256 0.744 46 H 0.072 0.928 47 H 0.092 0.908 48 H 0.077 0.923 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.473 -13.031 13.935 19.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 H 0.111 0.889 4 C -0.064 4.064 5 C -0.134 4.134 6 C -0.169 4.169 7 N -0.214 5.214 8 C -0.102 4.102 9 N -0.170 5.170 10 H 0.257 0.743 11 C 0.308 3.692 12 O -0.426 6.426 13 N -0.336 5.336 14 C -0.004 4.004 15 C -0.155 4.155 16 C 0.089 3.911 17 O -0.368 6.368 18 C 0.000 4.000 19 N -0.376 5.376 20 C -0.373 4.373 21 H 0.088 0.912 22 C -0.207 4.207 23 N -0.582 5.582 24 Si 0.739 3.261 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.208 1.208 28 C -0.196 4.196 29 C -0.014 4.014 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.092 0.908 35 H 0.186 0.814 36 H 0.223 0.777 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.232 0.768 42 H 0.043 0.957 43 H 0.047 0.953 44 H 0.216 0.784 45 H 0.066 0.934 46 H 0.090 0.910 47 H 0.111 0.889 48 H 0.095 0.905 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.716 -14.087 14.501 20.556 hybrid contribution 1.429 1.862 -1.050 2.571 sum -2.287 -12.226 13.451 18.321 Atomic orbital electron populations 1.21832 0.92049 1.03245 1.03070 1.21298 0.98574 1.00549 0.92359 0.88922 1.19863 1.01549 0.97963 0.87075 1.21237 0.94141 0.98597 0.99398 1.22114 0.97547 1.02493 0.94762 1.70297 1.19445 1.10160 1.21502 1.24980 0.88774 1.02746 0.93702 1.43347 1.16516 1.33021 1.24129 0.74255 1.20522 0.77539 0.86921 0.84241 1.90671 1.50693 1.16074 1.85198 1.48143 1.60969 1.13999 1.10528 1.21524 0.96031 0.96324 0.86534 1.21848 0.97692 0.94140 1.01824 1.21277 0.87563 0.94505 0.87715 1.86375 1.50399 1.35906 1.64118 1.21327 0.94506 0.86278 0.97880 1.42330 1.14774 1.02686 1.77811 1.19198 0.94990 0.88384 1.34688 0.91173 1.24729 0.96664 0.97382 1.01974 1.69627 1.15876 1.18914 1.53815 0.86172 0.79837 0.81417 0.78648 1.21614 1.21712 1.20773 1.22547 0.98684 1.00314 0.98062 1.21833 0.97563 0.80153 1.01841 0.91621 0.90818 0.91918 0.88297 0.90772 0.81436 0.77658 0.90629 0.89426 0.89958 0.90577 0.76838 0.95738 0.95271 0.78449 0.93387 0.90950 0.88933 0.90476 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.42 37.15 0.31 -0.90 16 2 C -0.11 -0.98 1.85 -91.77 -0.17 -1.15 16 3 H 0.09 0.82 6.53 -51.93 -0.34 0.48 16 4 C -0.03 -0.22 4.68 -27.88 -0.13 -0.35 16 5 C -0.02 -0.16 6.09 -81.60 -0.50 -0.65 16 6 C -0.02 -0.21 10.25 -17.81 -0.18 -0.39 16 7 N -0.50 -5.54 11.25 -14.66 -0.16 -5.70 16 8 C 0.18 1.48 13.04 -90.37 -1.18 0.30 16 9 N -0.57 -4.09 6.15 -10.30 -0.06 -4.15 16 10 H 0.42 1.92 8.96 -40.82 -0.37 1.55 16 11 C 0.52 6.32 6.81 -10.98 -0.07 6.25 16 12 O -0.55 -8.27 15.61 5.56 0.09 -8.19 16 13 N -0.60 -7.26 2.97 -172.77 -0.51 -7.78 16 14 C 0.12 1.49 6.18 -3.71 -0.02 1.46 16 15 C -0.12 -1.51 5.11 -26.61 -0.14 -1.65 16 16 C 0.13 1.94 0.71 -90.58 -0.06 1.88 16 17 O -0.56 -8.69 11.70 -35.23 -0.41 -9.10 16 18 C 0.13 2.40 5.43 -4.04 -0.02 2.38 16 19 N -0.73 -16.84 5.07 -59.91 -0.30 -17.14 16 20 C -0.24 -6.42 9.99 -15.06 -0.15 -6.57 16 21 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 22 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 23 N -0.93 -26.56 13.06 55.49 0.72 -25.83 16 24 Si 0.91 21.61 29.55 -169.99 -5.02 16.58 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 C -0.16 -2.16 4.88 -26.61 -0.13 -2.29 16 29 C 0.11 1.23 5.51 -3.71 -0.02 1.21 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.60 6.62 -51.93 -0.34 0.25 16 32 H 0.06 0.53 7.34 -51.93 -0.38 0.15 16 33 H 0.10 0.90 8.04 -51.92 -0.42 0.48 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.21 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.08 0.98 7.81 -51.93 -0.41 0.58 16 38 H 0.09 1.13 7.03 -51.93 -0.37 0.76 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.38 5.91 8.19 45.56 0.37 6.29 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.38 8.89 5.55 -40.82 -0.23 8.67 16 45 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.09 1.45 6.53 -51.93 -0.34 1.11 16 48 H 0.08 0.89 7.81 -51.93 -0.41 0.48 16 49 H 0.08 0.80 5.14 -51.93 -0.27 0.53 16 LS Contribution 385.92 15.07 5.82 5.82 Total: -1.00 -33.02 385.92 -9.25 -42.27 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -6.83 Total: 14.08 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -2.56 Total: -0.87 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: -0.32 Total: -60.60 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.33 Total: -17.28 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.02 -9.25 -42.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674100532.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.972 kcal (2) G-P(sol) polarization free energy of solvation -33.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds