Wall clock time and date at job start Tue Mar 31 2020 19:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.46912 * 2 1 4 4 C 1.52999 * 109.47523 * 119.99829 * 2 1 3 5 5 C 1.50700 * 109.47340 * 295.00362 * 4 2 1 6 6 C 1.34665 * 126.58972 * 85.01911 * 5 4 2 7 7 N 1.34129 * 108.01992 * 179.97438 * 6 5 4 8 8 C 1.30499 * 109.25449 * 359.97438 * 7 6 5 9 9 N 1.35048 * 108.70141 * 359.77176 * 8 7 6 10 10 H 0.96999 * 126.40258 * 180.26740 * 9 8 7 11 11 C 1.50704 * 109.47065 * 240.00097 * 2 1 3 12 12 O 1.21275 * 120.00230 * 263.88102 * 11 2 1 13 13 N 1.34776 * 119.99838 * 83.88187 * 11 2 1 14 14 C 1.46929 * 120.62944 * 175.48799 * 13 11 2 15 15 C 1.53199 * 108.77150 * 233.58527 * 14 13 11 16 16 C 1.53034 * 109.31376 * 305.36266 * 15 14 13 17 17 O 1.42902 * 109.46138 * 301.35949 * 16 15 14 18 18 C 1.52998 * 109.45845 * 181.38678 * 16 15 14 19 19 N 1.46501 * 109.47122 * 184.99967 * 18 16 15 20 20 C 1.36934 * 120.00297 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99907 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00523 * 180.02562 * 20 19 18 23 23 N 1.31619 * 119.99371 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00212 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47261 * 90.00241 * 24 22 20 26 26 H 1.48498 * 109.47206 * 209.99706 * 24 22 20 27 27 H 1.48497 * 109.47164 * 329.99868 * 24 22 20 28 28 C 1.53042 * 109.53952 * 61.36698 * 16 15 14 29 29 C 1.46929 * 120.63197 * 355.46410 * 13 11 2 30 30 H 1.08999 * 109.47185 * 186.35861 * 1 2 3 31 31 H 1.09000 * 109.47351 * 306.35720 * 1 2 3 32 32 H 1.08994 * 109.47483 * 66.35850 * 1 2 3 33 33 H 1.09007 * 109.46463 * 55.00306 * 4 2 1 34 34 H 1.08996 * 109.47275 * 174.99941 * 4 2 1 35 35 H 1.08000 * 125.99583 * 359.96950 * 6 5 4 36 36 H 1.08000 * 125.65132 * 180.02562 * 8 7 6 37 37 H 1.08993 * 109.58835 * 113.79984 * 14 13 11 38 38 H 1.08998 * 109.58418 * 353.36898 * 14 13 11 39 39 H 1.09001 * 109.49249 * 185.40871 * 15 14 13 40 40 H 1.08997 * 109.49783 * 65.31826 * 15 14 13 41 41 H 0.96700 * 113.99951 * 180.02562 * 17 16 15 42 42 H 1.08999 * 109.47385 * 305.00121 * 18 16 15 43 43 H 1.09000 * 109.47095 * 64.99977 * 18 16 15 44 44 H 0.97001 * 120.00073 * 0.02562 * 19 18 16 45 45 H 0.97001 * 119.99799 * 180.02562 * 23 22 20 46 46 H 1.09005 * 109.49373 * 58.58420 * 28 16 15 47 47 H 1.08997 * 109.49939 * 178.68377 * 28 16 15 48 48 H 1.08999 * 109.58374 * 246.20019 * 29 13 11 49 49 H 1.08993 * 109.58725 * 6.62528 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0570 2.4766 6 6 0.4667 -0.0214 3.1303 7 7 0.5107 0.8295 4.1662 8 6 1.6683 1.4319 4.1795 9 7 2.4062 0.9746 3.1449 10 1 3.3088 1.2470 2.9169 11 6 2.0323 -0.7104 -1.2305 12 8 2.3400 -1.8820 -1.1712 13 7 2.1396 -0.0437 -2.3969 14 6 2.7196 -0.6937 -3.5801 15 6 3.8524 0.1852 -4.1198 16 6 3.3197 1.5968 -4.3760 17 8 2.2398 1.5359 -5.3100 18 6 4.4397 2.4683 -4.9477 19 7 3.9651 3.8478 -5.0813 20 6 4.8000 4.8144 -5.5750 21 1 5.8083 4.5596 -5.8663 22 6 4.3506 6.1217 -5.7011 23 7 3.1220 6.4322 -5.3455 24 14 5.4894 7.4400 -6.3753 25 1 5.3452 7.5109 -7.8516 26 1 5.1339 8.7530 -5.7797 27 1 6.8942 7.1041 -6.0306 28 6 2.8227 2.2027 -3.0614 29 6 1.6784 1.3468 -2.5096 30 1 -0.3633 -1.0213 0.1138 31 1 -0.3634 0.6092 0.8276 32 1 -0.3634 0.4121 -0.9413 33 1 1.6054 -1.7198 1.2951 34 1 3.1263 -0.7994 1.2055 35 1 -0.3652 -0.6578 2.8668 36 1 1.9854 2.1704 4.9009 37 1 1.9524 -0.8116 -4.3452 38 1 3.1155 -1.6707 -3.3030 39 1 4.2275 -0.2369 -5.0521 40 1 4.6596 0.2281 -3.3886 41 1 1.8526 2.3967 -5.5202 42 1 5.2984 2.4428 -4.2768 43 1 4.7320 2.0882 -5.9266 44 1 3.0596 4.0768 -4.8193 45 1 2.8077 7.3457 -5.4339 46 1 3.6397 2.2266 -2.3401 47 1 2.4650 3.2166 -3.2404 48 1 0.8262 1.3952 -3.1875 49 1 1.3872 1.7160 -1.5263 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674100532.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:21 Heat of formation + Delta-G solvation = -44.916416 kcal Electronic energy + Delta-G solvation = -29909.766877 eV Core-core repulsion = 25871.772605 eV Total energy + Delta-G solvation = -4037.994272 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.97560 -41.57063 -39.86701 -36.83079 -36.12976 -35.78463 -33.52587 -33.36208 -32.54023 -31.78864 -30.64539 -28.29562 -27.59313 -25.90688 -24.50838 -24.46204 -22.92087 -22.29334 -21.74549 -21.17676 -19.86504 -19.45466 -18.90487 -18.09522 -17.26193 -17.04877 -16.72973 -16.43279 -15.94474 -15.82376 -15.77103 -15.44729 -15.10472 -14.96052 -14.80522 -14.71649 -14.41926 -14.32724 -14.15033 -13.74473 -13.56842 -13.37726 -13.21463 -13.08686 -12.96235 -12.81619 -12.72726 -12.32134 -12.29928 -12.17554 -12.08599 -12.06645 -11.95723 -11.31281 -10.98645 -10.98037 -10.91827 -10.83021 -10.60017 -9.65430 -9.27710 -9.02805 -7.97699 -5.25649 1.10620 1.47628 1.48559 1.56315 1.57957 1.95330 2.24865 2.33185 2.54145 3.25084 3.36464 3.40719 3.64659 3.71961 3.77521 3.86391 3.92120 3.96117 4.03773 4.15547 4.23860 4.27006 4.34920 4.40865 4.48839 4.58551 4.65039 4.70264 4.74543 4.76026 4.81149 4.83402 4.88492 4.91094 4.98254 5.05668 5.07633 5.16747 5.25912 5.32284 5.36972 5.48622 5.51854 5.81689 6.24574 6.39371 6.58144 6.74223 7.11478 7.16772 7.32833 8.03489 8.29176 9.24792 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012488 B = 0.002721 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.598583 B =10289.594150 C =11813.430163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 H 0.102 0.898 4 C -0.017 4.017 5 C -0.018 4.018 6 C -0.039 4.039 7 N -0.538 5.538 8 C 0.187 3.813 9 N -0.559 5.559 10 H 0.433 0.567 11 C 0.520 3.480 12 O -0.578 6.578 13 N -0.604 5.604 14 C 0.122 3.878 15 C -0.111 4.111 16 C 0.138 3.862 17 O -0.563 6.563 18 C 0.128 3.872 19 N -0.736 5.736 20 C -0.247 4.247 21 H 0.070 0.930 22 C -0.066 4.066 23 N -0.962 5.962 24 Si 0.967 3.033 25 H -0.289 1.289 26 H -0.294 1.294 27 H -0.273 1.273 28 C -0.150 4.150 29 C 0.117 3.883 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.172 0.828 36 H 0.239 0.761 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.382 0.618 42 H 0.027 0.973 43 H 0.019 0.981 44 H 0.378 0.622 45 H 0.252 0.748 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.079 0.921 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.899 -13.008 14.720 19.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.120 0.880 4 C -0.056 4.056 5 C -0.134 4.134 6 C -0.186 4.186 7 N -0.258 5.258 8 C -0.097 4.097 9 N -0.164 5.164 10 H 0.273 0.727 11 C 0.309 3.691 12 O -0.458 6.458 13 N -0.335 5.335 14 C 0.000 4.000 15 C -0.149 4.149 16 C 0.097 3.903 17 O -0.370 6.370 18 C 0.001 3.999 19 N -0.381 5.381 20 C -0.379 4.379 21 H 0.088 0.912 22 C -0.259 4.259 23 N -0.612 5.612 24 Si 0.797 3.203 25 H -0.217 1.217 26 H -0.221 1.221 27 H -0.198 1.198 28 C -0.189 4.189 29 C -0.006 4.006 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.189 0.811 36 H 0.255 0.745 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.231 0.769 42 H 0.044 0.956 43 H 0.037 0.963 44 H 0.212 0.788 45 H 0.061 0.939 46 H 0.091 0.909 47 H 0.092 0.908 48 H 0.097 0.903 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.111 -14.086 15.276 21.011 hybrid contribution 1.292 1.803 -1.295 2.568 sum -1.820 -12.284 13.981 18.699 Atomic orbital electron populations 1.21804 0.91277 1.03382 1.03294 1.21275 0.99039 1.00570 0.91067 0.87960 1.19749 1.01470 0.97596 0.86816 1.21139 0.94024 0.98892 0.99356 1.22305 0.98349 1.02891 0.95056 1.70279 1.21312 1.11559 1.22617 1.25632 0.87976 1.02272 0.93793 1.43342 1.17010 1.32365 1.23636 0.72691 1.20987 0.76760 0.86586 0.84761 1.90661 1.52035 1.17496 1.85650 1.48187 1.60766 1.14125 1.10463 1.21431 0.95714 0.96180 0.86700 1.21818 0.97978 0.92769 1.02352 1.21231 0.86238 0.94956 0.87907 1.86381 1.50339 1.35845 1.64402 1.21451 0.96031 0.84859 0.97574 1.42427 1.14371 1.03861 1.77431 1.19526 0.95348 0.89271 1.33755 0.91233 1.25434 0.98059 0.99319 1.03105 1.69753 1.17253 1.18911 1.55283 0.85234 0.78591 0.78770 0.77704 1.21654 1.22072 1.19805 1.22425 0.99472 0.99580 0.97379 1.21809 0.96413 0.79354 1.02983 0.91681 0.90349 0.91791 0.88910 0.90671 0.81059 0.74453 0.90992 0.89540 0.89514 0.89880 0.76937 0.95553 0.96263 0.78787 0.93880 0.90857 0.90848 0.90321 0.87700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.42 71.98 0.61 -1.50 16 2 C -0.10 -1.62 1.85 -11.54 -0.02 -1.65 16 3 H 0.10 1.53 6.53 -2.38 -0.02 1.51 16 4 C -0.02 -0.27 4.68 29.85 0.14 -0.13 16 5 C -0.02 -0.28 6.09 40.95 0.25 -0.03 16 6 C -0.04 -0.74 10.25 83.52 0.86 0.12 16 7 N -0.54 -11.44 11.25 -200.31 -2.25 -13.69 16 8 C 0.19 2.66 13.04 180.26 2.35 5.01 16 9 N -0.56 -6.89 6.15 -186.49 -1.15 -8.04 16 10 H 0.43 2.90 8.96 -92.71 -0.83 2.07 16 11 C 0.52 11.82 6.81 87.66 0.60 12.42 16 12 O -0.58 -16.83 15.61 -3.01 -0.05 -16.87 16 13 N -0.60 -13.50 2.97 -818.90 -2.43 -15.93 16 14 C 0.12 2.91 6.18 86.36 0.53 3.44 16 15 C -0.11 -2.71 5.11 30.67 0.16 -2.55 16 16 C 0.14 3.96 0.71 -10.77 -0.01 3.96 16 17 O -0.56 -16.99 11.70 -148.98 -1.74 -18.74 16 18 C 0.13 4.73 5.43 86.38 0.47 5.20 16 19 N -0.74 -33.85 5.07 -343.45 -1.74 -35.59 16 20 C -0.25 -13.05 9.99 84.03 0.84 -12.21 16 21 H 0.07 3.61 7.83 -2.91 -0.02 3.59 16 22 C -0.07 -3.59 5.50 84.86 0.47 -3.13 16 23 N -0.96 -54.86 13.06 21.65 0.28 -54.58 16 24 Si 0.97 44.20 29.55 68.60 2.03 46.22 16 25 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 26 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 27 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 28 C -0.15 -3.92 4.88 30.67 0.15 -3.77 16 29 C 0.12 2.43 5.51 86.36 0.48 2.91 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.14 6.62 -2.39 -0.02 1.13 16 32 H 0.06 0.95 7.34 -2.39 -0.02 0.93 16 33 H 0.09 1.61 8.04 -2.38 -0.02 1.59 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 35 H 0.17 2.88 8.06 -2.91 -0.02 2.85 16 36 H 0.24 1.43 8.06 -2.91 -0.02 1.41 16 37 H 0.07 1.78 7.81 -2.39 -0.02 1.76 16 38 H 0.09 2.12 7.03 -2.39 -0.02 2.10 16 39 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.38 11.72 8.19 -74.06 -0.61 11.11 16 42 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.38 17.74 5.55 -92.71 -0.51 17.22 16 45 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 46 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 47 H 0.07 2.25 6.53 -2.39 -0.02 2.24 16 48 H 0.08 1.67 7.81 -2.39 -0.02 1.65 16 49 H 0.10 1.75 5.14 -2.39 -0.01 1.74 16 Total: -1.00 -69.56 385.92 -0.15 -69.71 By element: Atomic # 1 Polarization: 40.40 SS G_CDS: -0.96 Total: 39.44 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 7.86 Total: 8.07 kcal Atomic # 7 Polarization: -120.55 SS G_CDS: -7.29 Total: -127.84 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -1.79 Total: -35.61 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -69.56 -0.15 -69.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674100532.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.797 kcal (2) G-P(sol) polarization free energy of solvation -69.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds