Wall clock time and date at job start Tue Mar 31 2020 20:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47183 * 2 1 4 4 C 1.53006 * 109.47198 * 119.99982 * 2 1 3 5 5 C 1.53005 * 109.46945 * 185.00209 * 4 2 1 6 6 N 1.46504 * 109.46606 * 179.97438 * 5 4 2 7 7 C 1.34768 * 119.99870 * 179.97438 * 6 5 4 8 8 O 1.21287 * 120.00075 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00550 * 180.02562 * 7 6 5 10 10 H 1.09008 * 109.46977 * 300.00401 * 9 7 6 11 11 C 1.53001 * 109.47043 * 59.99786 * 9 7 6 12 12 C 1.52997 * 109.47721 * 180.02562 * 9 7 6 13 13 C 1.53000 * 109.47060 * 175.00208 * 12 9 7 14 14 C 1.50706 * 109.46735 * 180.02562 * 13 12 9 15 15 C 1.38269 * 119.98202 * 269.71894 * 14 13 12 16 16 C 1.38231 * 120.04718 * 179.72530 * 15 14 13 17 17 C 1.38213 * 120.02303 * 0.55405 * 16 15 14 18 18 C 1.38436 * 119.97983 * 359.72396 * 17 16 15 19 19 F 1.35099 * 120.03052 * 180.02562 * 18 17 16 20 20 C 1.38167 * 119.98864 * 90.00072 * 14 13 12 21 21 N 1.46500 * 109.47503 * 240.00121 * 2 1 3 22 22 C 1.36937 * 119.99972 * 84.99991 * 21 2 1 23 23 H 1.08001 * 119.99967 * 0.02562 * 22 21 2 24 24 C 1.38813 * 120.00180 * 180.02562 * 22 21 2 25 25 N 1.31619 * 119.99766 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00330 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47360 * 89.99669 * 26 24 22 28 28 H 1.48495 * 109.47379 * 209.99841 * 26 24 22 29 29 H 1.48504 * 109.46998 * 329.99855 * 26 24 22 30 30 H 1.09006 * 109.47333 * 59.99843 * 1 2 3 31 31 H 1.09002 * 109.47183 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47499 * 300.00204 * 1 2 3 33 33 H 1.09000 * 109.46811 * 64.99930 * 4 2 1 34 34 H 1.08998 * 109.47136 * 305.00084 * 4 2 1 35 35 H 1.09000 * 109.46872 * 60.00390 * 5 4 2 36 36 H 1.08998 * 109.47101 * 299.99896 * 5 4 2 37 37 H 0.97005 * 120.00027 * 0.02562 * 6 5 4 38 38 H 1.08998 * 109.47430 * 180.02562 * 11 9 7 39 39 H 1.08996 * 109.47271 * 300.01083 * 11 9 7 40 40 H 1.09008 * 109.46731 * 60.00465 * 11 9 7 41 41 H 1.09002 * 109.47153 * 54.99889 * 12 9 7 42 42 H 1.09001 * 109.46832 * 295.00079 * 12 9 7 43 43 H 1.09001 * 109.47194 * 299.99650 * 13 12 9 44 44 H 1.08992 * 109.47399 * 59.99823 * 13 12 9 45 45 H 1.08001 * 119.97692 * 359.97438 * 15 14 13 46 46 H 1.07994 * 119.98400 * 180.27797 * 16 15 14 47 47 H 1.08005 * 120.01113 * 179.74618 * 17 16 15 48 48 H 1.08003 * 120.01520 * 359.97319 * 20 14 13 49 49 H 0.96995 * 119.99932 * 265.00012 * 21 2 1 50 50 H 0.96996 * 120.00091 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6132 1.3137 6 7 4.0531 -1.3033 2.5102 7 6 5.3739 -1.3394 2.7755 8 8 6.1583 -0.8002 2.0239 9 6 5.8763 -2.0498 4.0059 10 1 5.4419 -1.5900 4.8937 11 6 5.4711 -3.5239 3.9450 12 6 7.4011 -1.9417 4.0705 13 6 7.9007 -2.5534 5.3809 14 6 9.4026 -2.4464 5.4447 15 6 10.1900 -3.4665 4.9436 16 6 11.5677 -3.3672 4.9963 17 6 12.1596 -2.2529 5.5604 18 6 11.3723 -1.2334 6.0677 19 9 11.9498 -0.1436 6.6189 20 6 9.9921 -1.3315 6.0092 21 7 2.0183 -0.6906 -1.1962 22 6 2.1492 -0.0074 -2.3757 23 1 1.8927 1.0406 -2.4241 24 6 2.6115 -0.6618 -3.5093 25 7 2.9245 -1.9389 -3.4502 26 14 2.7892 0.2699 -5.1185 27 1 4.1514 0.8550 -5.2039 28 1 2.5785 -0.6615 -6.2557 29 1 1.7791 1.3569 -5.1753 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.7516 -1.7715 1.2056 34 1 1.6053 -0.2618 2.1370 35 1 3.8531 0.4371 1.3574 36 1 3.9995 -1.0727 0.4260 37 1 3.4257 -1.7349 3.1112 38 1 5.8341 -4.0376 4.8351 39 1 4.3849 -3.6006 3.8991 40 1 5.9056 -3.9837 3.0572 41 1 7.6933 -0.8926 4.0246 42 1 7.8393 -2.4780 3.2288 43 1 7.4625 -2.0171 6.2226 44 1 7.6086 -3.6025 5.4268 45 1 9.7282 -4.3398 4.5070 46 1 12.1817 -4.1626 4.6005 47 1 13.2361 -2.1773 5.6052 48 1 9.3768 -0.5366 6.4042 49 1 2.2491 -1.6317 -1.1526 50 1 3.2479 -2.3961 -4.2421 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674257894.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:43 Heat of formation + Delta-G solvation = -78.248038 kcal Electronic energy + Delta-G solvation = -27792.511265 eV Core-core repulsion = 23733.151663 eV Total energy + Delta-G solvation = -4059.359602 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.17479 -39.98633 -39.37356 -36.70734 -35.71465 -34.35162 -32.69333 -32.12388 -30.86727 -29.40577 -28.58034 -27.89299 -25.59780 -24.00727 -23.25001 -23.03474 -22.04463 -21.10787 -20.18602 -19.40891 -17.74498 -17.23604 -16.86795 -16.63773 -16.46548 -15.91803 -15.79470 -15.56106 -15.09057 -14.57023 -14.44862 -14.10495 -13.89232 -13.86752 -13.51013 -13.42069 -13.09308 -13.00379 -12.85544 -12.51403 -12.46737 -12.10421 -12.03677 -11.82021 -11.79689 -11.53004 -11.43660 -11.06142 -11.02514 -10.89243 -10.87723 -10.71547 -10.62044 -10.26921 -9.98521 -9.63039 -9.52517 -9.27391 -8.97370 -8.90108 -8.76402 -6.93408 -5.73479 -3.01991 0.82430 0.86864 2.81834 3.20045 3.38632 3.46676 3.51746 3.52908 3.89887 4.27191 4.40369 4.59800 4.62481 4.65443 4.70772 4.78365 4.88035 4.96389 5.10713 5.18422 5.20830 5.29297 5.37812 5.40975 5.52305 5.57349 5.60185 5.64705 5.68948 5.71818 5.76302 5.80727 5.89102 5.96541 6.00095 6.08156 6.14953 6.18913 6.21306 6.36305 6.40919 6.50745 6.56721 6.70359 6.73927 6.87557 7.07048 7.69089 7.73643 8.42524 8.44999 9.56348 10.13032 10.47616 11.49215 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013969 B = 0.001866 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.944281 B =15002.007021 C =15931.755062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.121 3.879 6 N -0.729 5.729 7 C 0.510 3.490 8 O -0.536 6.536 9 C -0.110 4.110 10 H 0.095 0.905 11 C -0.147 4.147 12 C -0.095 4.095 13 C -0.084 4.084 14 C -0.048 4.048 15 C -0.127 4.127 16 C -0.088 4.088 17 C -0.162 4.162 18 C 0.099 3.901 19 F -0.141 7.141 20 C -0.152 4.152 21 N -0.723 5.723 22 C -0.237 4.237 23 H 0.070 0.930 24 C -0.014 4.014 25 N -0.933 5.933 26 Si 0.905 3.095 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.035 0.965 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.395 0.605 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.130 0.870 46 H 0.132 0.868 47 H 0.133 0.867 48 H 0.135 0.865 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.667 -4.971 24.934 27.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.063 3.937 3 H 0.067 0.933 4 C -0.170 4.170 5 C -0.001 4.001 6 N -0.380 5.380 7 C 0.295 3.705 8 O -0.413 6.413 9 C -0.131 4.131 10 H 0.113 0.887 11 C -0.204 4.204 12 C -0.133 4.133 13 C -0.121 4.121 14 C -0.048 4.048 15 C -0.145 4.145 16 C -0.106 4.106 17 C -0.180 4.180 18 C 0.080 3.920 19 F -0.120 7.120 20 C -0.171 4.171 21 N -0.365 5.365 22 C -0.368 4.368 23 H 0.088 0.912 24 C -0.210 4.210 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.217 1.217 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.228 0.772 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.148 0.852 46 H 0.150 0.850 47 H 0.151 0.849 48 H 0.152 0.848 49 H 0.217 0.783 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.261 -4.397 24.239 27.086 hybrid contribution -0.061 0.196 -0.616 0.650 sum 11.201 -4.201 23.622 26.479 Atomic orbital electron populations 1.22423 0.99156 1.00804 0.99943 1.20157 0.91863 0.95586 0.86073 0.93331 1.22053 0.93994 1.01719 0.99269 1.21445 0.94333 0.97130 0.87242 1.46138 1.07293 1.57065 1.27483 1.20563 0.82431 0.80366 0.87117 1.90742 1.55271 1.45664 1.49601 1.21320 0.97520 0.97289 0.97011 0.88674 1.21847 1.01809 0.93807 1.02980 1.21383 0.92700 1.02526 0.96727 1.20756 0.90056 1.02554 0.98742 1.19755 0.96223 0.93049 0.95797 1.21172 0.93577 0.99302 1.00459 1.21024 0.94940 0.97128 0.97534 1.21148 1.00535 0.94359 1.02001 1.17721 0.91420 0.84671 0.98210 1.91502 1.84925 1.52324 1.83255 1.21063 0.92861 0.99849 1.03290 1.42442 1.78080 1.10629 1.05350 1.19221 1.36466 0.93816 0.87329 0.91227 1.24726 1.02206 0.95966 0.98058 1.69652 1.50958 1.08648 1.28866 0.86217 0.77821 0.78580 0.83746 1.21716 1.21859 1.20832 0.92739 0.93540 0.94598 0.91659 0.92008 0.91974 0.89800 0.77160 0.91363 0.92033 0.91753 0.90766 0.90749 0.90592 0.90087 0.85194 0.84974 0.84913 0.84752 0.78310 0.93580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 9.49 37.15 0.35 -2.48 16 2 C 0.17 3.31 2.89 -67.93 -0.20 3.12 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 C -0.13 -1.98 4.87 -26.73 -0.13 -2.11 16 5 C 0.12 2.00 5.56 -4.04 -0.02 1.98 16 6 N -0.73 -9.45 5.45 -60.29 -0.33 -9.77 16 7 C 0.51 7.18 7.15 -10.99 -0.08 7.10 16 8 O -0.54 -10.29 15.92 5.55 0.09 -10.20 16 9 C -0.11 -1.01 2.72 -91.77 -0.25 -1.26 16 10 H 0.10 0.66 8.14 -51.92 -0.42 0.24 16 11 C -0.15 -1.09 8.85 37.16 0.33 -0.76 16 12 C -0.10 -0.91 4.01 -26.73 -0.11 -1.02 16 13 C -0.08 -0.57 5.10 -27.88 -0.14 -0.71 16 14 C -0.05 -0.39 5.13 -104.63 -0.54 -0.93 16 15 C -0.13 -0.96 9.70 -39.57 -0.38 -1.35 16 16 C -0.09 -0.64 10.04 -39.59 -0.40 -1.04 16 17 C -0.16 -1.32 10.03 -39.52 -0.40 -1.72 16 18 C 0.10 0.95 7.30 -39.42 -0.29 0.66 16 19 F -0.14 -1.50 17.27 2.25 0.04 -1.46 16 20 C -0.15 -1.36 9.68 -39.51 -0.38 -1.74 16 21 N -0.72 -17.69 4.57 -53.42 -0.24 -17.94 16 22 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 23 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 24 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 25 N -0.93 -28.34 13.06 55.49 0.72 -27.62 16 26 Si 0.91 22.75 29.55 -169.99 -5.02 17.72 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 29 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.08 1.75 7.75 -51.93 -0.40 1.35 16 37 H 0.39 3.75 7.89 -40.82 -0.32 3.43 16 38 H 0.07 0.36 6.57 -51.93 -0.34 0.02 16 39 H 0.06 0.41 7.56 -51.93 -0.39 0.02 16 40 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 41 H 0.07 0.84 7.96 -51.93 -0.41 0.43 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.08 0.43 8.08 -51.93 -0.42 0.01 16 44 H 0.08 0.44 6.51 -51.93 -0.34 0.10 16 45 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 46 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 47 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 48 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 49 H 0.38 10.00 7.80 -40.82 -0.32 9.68 16 50 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 414.95 15.07 6.25 6.25 Total: -1.00 -33.79 414.95 -9.78 -43.57 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -8.41 Total: 8.88 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -2.88 Total: -9.45 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: 0.15 Total: -55.33 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.79 -9.78 -43.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674257894.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.678 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds