Wall clock time and date at job start Tue Mar 31 2020 20:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47183 * 2 1 4 4 C 1.53006 * 109.47198 * 119.99982 * 2 1 3 5 5 C 1.53005 * 109.46945 * 185.00209 * 4 2 1 6 6 N 1.46504 * 109.46606 * 179.97438 * 5 4 2 7 7 C 1.34768 * 119.99870 * 179.97438 * 6 5 4 8 8 O 1.21287 * 120.00075 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00550 * 180.02562 * 7 6 5 10 10 H 1.09008 * 109.46977 * 300.00401 * 9 7 6 11 11 C 1.53001 * 109.47043 * 59.99786 * 9 7 6 12 12 C 1.52997 * 109.47721 * 180.02562 * 9 7 6 13 13 C 1.53000 * 109.47060 * 175.00208 * 12 9 7 14 14 C 1.50706 * 109.46735 * 180.02562 * 13 12 9 15 15 C 1.38269 * 119.98202 * 269.71894 * 14 13 12 16 16 C 1.38231 * 120.04718 * 179.72530 * 15 14 13 17 17 C 1.38213 * 120.02303 * 0.55405 * 16 15 14 18 18 C 1.38436 * 119.97983 * 359.72396 * 17 16 15 19 19 F 1.35099 * 120.03052 * 180.02562 * 18 17 16 20 20 C 1.38167 * 119.98864 * 90.00072 * 14 13 12 21 21 N 1.46500 * 109.47503 * 240.00121 * 2 1 3 22 22 C 1.36937 * 119.99972 * 84.99991 * 21 2 1 23 23 H 1.08001 * 119.99967 * 0.02562 * 22 21 2 24 24 C 1.38813 * 120.00180 * 180.02562 * 22 21 2 25 25 N 1.31619 * 119.99766 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00330 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47360 * 89.99669 * 26 24 22 28 28 H 1.48495 * 109.47379 * 209.99841 * 26 24 22 29 29 H 1.48504 * 109.46998 * 329.99855 * 26 24 22 30 30 H 1.09006 * 109.47333 * 59.99843 * 1 2 3 31 31 H 1.09002 * 109.47183 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47499 * 300.00204 * 1 2 3 33 33 H 1.09000 * 109.46811 * 64.99930 * 4 2 1 34 34 H 1.08998 * 109.47136 * 305.00084 * 4 2 1 35 35 H 1.09000 * 109.46872 * 60.00390 * 5 4 2 36 36 H 1.08998 * 109.47101 * 299.99896 * 5 4 2 37 37 H 0.97005 * 120.00027 * 0.02562 * 6 5 4 38 38 H 1.08998 * 109.47430 * 180.02562 * 11 9 7 39 39 H 1.08996 * 109.47271 * 300.01083 * 11 9 7 40 40 H 1.09008 * 109.46731 * 60.00465 * 11 9 7 41 41 H 1.09002 * 109.47153 * 54.99889 * 12 9 7 42 42 H 1.09001 * 109.46832 * 295.00079 * 12 9 7 43 43 H 1.09001 * 109.47194 * 299.99650 * 13 12 9 44 44 H 1.08992 * 109.47399 * 59.99823 * 13 12 9 45 45 H 1.08001 * 119.97692 * 359.97438 * 15 14 13 46 46 H 1.07994 * 119.98400 * 180.27797 * 16 15 14 47 47 H 1.08005 * 120.01113 * 179.74618 * 17 16 15 48 48 H 1.08003 * 120.01520 * 359.97319 * 20 14 13 49 49 H 0.96995 * 119.99932 * 265.00012 * 21 2 1 50 50 H 0.96996 * 120.00091 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6132 1.3137 6 7 4.0531 -1.3033 2.5102 7 6 5.3739 -1.3394 2.7755 8 8 6.1583 -0.8002 2.0239 9 6 5.8763 -2.0498 4.0059 10 1 5.4419 -1.5900 4.8937 11 6 5.4711 -3.5239 3.9450 12 6 7.4011 -1.9417 4.0705 13 6 7.9007 -2.5534 5.3809 14 6 9.4026 -2.4464 5.4447 15 6 10.1900 -3.4665 4.9436 16 6 11.5677 -3.3672 4.9963 17 6 12.1596 -2.2529 5.5604 18 6 11.3723 -1.2334 6.0677 19 9 11.9498 -0.1436 6.6189 20 6 9.9921 -1.3315 6.0092 21 7 2.0183 -0.6906 -1.1962 22 6 2.1492 -0.0074 -2.3757 23 1 1.8927 1.0406 -2.4241 24 6 2.6115 -0.6618 -3.5093 25 7 2.9245 -1.9389 -3.4502 26 14 2.7892 0.2699 -5.1185 27 1 4.1514 0.8550 -5.2039 28 1 2.5785 -0.6615 -6.2557 29 1 1.7791 1.3569 -5.1753 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.7516 -1.7715 1.2056 34 1 1.6053 -0.2618 2.1370 35 1 3.8531 0.4371 1.3574 36 1 3.9995 -1.0727 0.4260 37 1 3.4257 -1.7349 3.1112 38 1 5.8341 -4.0376 4.8351 39 1 4.3849 -3.6006 3.8991 40 1 5.9056 -3.9837 3.0572 41 1 7.6933 -0.8926 4.0246 42 1 7.8393 -2.4780 3.2288 43 1 7.4625 -2.0171 6.2226 44 1 7.6086 -3.6025 5.4268 45 1 9.7282 -4.3398 4.5070 46 1 12.1817 -4.1626 4.6005 47 1 13.2361 -2.1773 5.6052 48 1 9.3768 -0.5366 6.4042 49 1 2.2491 -1.6317 -1.1526 50 1 3.2479 -2.3961 -4.2421 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674257894.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:42 Heat of formation + Delta-G solvation = -98.691353 kcal Electronic energy + Delta-G solvation = -27793.397753 eV Core-core repulsion = 23733.151663 eV Total energy + Delta-G solvation = -4060.246090 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.91911 -41.01399 -40.08225 -38.19595 -36.57301 -35.81701 -34.17100 -33.22446 -31.48807 -31.02165 -29.77031 -28.92797 -26.33282 -25.83379 -24.50351 -23.66742 -23.06957 -21.95671 -21.49704 -20.58451 -19.26803 -18.46674 -17.79605 -17.33159 -17.11022 -17.01845 -16.86427 -16.62099 -16.51016 -15.87676 -15.39877 -15.33513 -15.23328 -14.92872 -14.53587 -14.49350 -14.13494 -14.04482 -13.79030 -13.57761 -13.52595 -13.25002 -13.22979 -12.84128 -12.69732 -12.62729 -12.48232 -12.44722 -12.27098 -12.22447 -12.12487 -12.07134 -11.67093 -11.62030 -11.58438 -11.56259 -10.96140 -10.69235 -10.04788 -9.89761 -9.61231 -8.97661 -7.93188 -5.19584 0.19122 0.26145 1.44729 1.47044 1.54293 1.70307 2.25695 2.56444 2.63726 3.26207 3.40947 3.64150 3.75333 3.84142 3.92358 3.99372 4.02005 4.04254 4.18317 4.23341 4.30640 4.37202 4.38984 4.51653 4.54828 4.56046 4.67245 4.76905 4.78446 4.89737 4.97362 5.00830 5.02770 5.03784 5.06342 5.12073 5.14690 5.19239 5.25031 5.37030 5.39641 5.40462 5.43952 5.52377 5.54053 5.61589 5.62412 5.97056 6.30170 6.64511 7.35533 7.36135 8.14368 8.35477 9.30389 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013969 B = 0.001866 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.944281 B =15002.007021 C =15931.755062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.162 3.838 3 H 0.040 0.960 4 C -0.114 4.114 5 C 0.132 3.868 6 N -0.713 5.713 7 C 0.501 3.499 8 O -0.597 6.597 9 C -0.097 4.097 10 H 0.130 0.870 11 C -0.145 4.145 12 C -0.092 4.092 13 C -0.073 4.073 14 C -0.058 4.058 15 C -0.132 4.132 16 C -0.091 4.091 17 C -0.168 4.168 18 C 0.072 3.928 19 F -0.153 7.153 20 C -0.164 4.164 21 N -0.734 5.734 22 C -0.232 4.232 23 H 0.073 0.927 24 C -0.079 4.079 25 N -0.969 5.969 26 Si 0.966 3.034 27 H -0.293 1.293 28 H -0.295 1.295 29 H -0.268 1.268 30 H 0.031 0.969 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.046 0.954 36 H 0.032 0.968 37 H 0.417 0.583 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.043 0.957 41 H 0.048 0.952 42 H 0.051 0.949 43 H 0.093 0.907 44 H 0.103 0.897 45 H 0.149 0.851 46 H 0.157 0.843 47 H 0.146 0.854 48 H 0.139 0.861 49 H 0.372 0.628 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.288 -5.702 27.393 29.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.054 3.946 3 H 0.058 0.942 4 C -0.152 4.152 5 C 0.008 3.992 6 N -0.365 5.365 7 C 0.289 3.711 8 O -0.478 6.478 9 C -0.118 4.118 10 H 0.148 0.852 11 C -0.202 4.202 12 C -0.130 4.130 13 C -0.110 4.110 14 C -0.058 4.058 15 C -0.150 4.150 16 C -0.109 4.109 17 C -0.187 4.187 18 C 0.053 3.947 19 F -0.132 7.132 20 C -0.182 4.182 21 N -0.375 5.375 22 C -0.364 4.364 23 H 0.091 0.909 24 C -0.271 4.271 25 N -0.621 5.621 26 Si 0.796 3.204 27 H -0.221 1.221 28 H -0.222 1.222 29 H -0.193 1.193 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.124 0.876 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.254 0.746 38 H 0.118 0.882 39 H 0.092 0.908 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.112 0.888 44 H 0.122 0.878 45 H 0.167 0.833 46 H 0.175 0.825 47 H 0.164 0.836 48 H 0.157 0.843 49 H 0.204 0.796 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.822 -5.111 26.766 28.966 hybrid contribution 0.374 0.466 -1.321 1.449 sum 10.196 -4.646 25.446 27.803 Atomic orbital electron populations 1.22253 0.97039 1.01087 1.00835 1.20479 0.93225 0.95139 0.85797 0.94189 1.21902 0.92436 1.02086 0.98814 1.21057 0.95379 0.95929 0.86861 1.45938 1.07675 1.56425 1.26494 1.21612 0.82057 0.79460 0.87975 1.90719 1.56759 1.48302 1.52000 1.21356 0.97013 0.98198 0.95271 0.85183 1.21888 1.02639 0.92102 1.03576 1.21300 0.93139 1.00893 0.97641 1.20724 0.89047 1.03853 0.97401 1.19982 0.97182 0.92935 0.95747 1.21515 0.93893 0.99755 0.99815 1.21366 0.95301 0.97333 0.96877 1.21407 1.01307 0.94288 1.01706 1.18042 0.92110 0.85042 0.99514 1.91463 1.85138 1.52993 1.83637 1.21247 0.92817 1.00480 1.03694 1.42638 1.78367 1.10219 1.06286 1.19596 1.34328 0.94032 0.88481 0.90899 1.25490 1.03405 0.96904 1.01346 1.69802 1.52950 1.10105 1.29218 0.85239 0.77656 0.77589 0.79941 1.22086 1.22211 1.19314 0.94982 0.93530 0.90549 0.90867 0.87621 0.93590 0.94985 0.74569 0.88196 0.90763 0.93783 0.93318 0.93042 0.88814 0.87843 0.83339 0.82530 0.83639 0.84277 0.79640 0.94283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.93 9.49 71.98 0.68 -4.25 16 2 C 0.16 6.02 2.89 44.99 0.13 6.15 16 3 H 0.04 1.55 8.08 -2.39 -0.02 1.54 16 4 C -0.11 -3.19 4.87 30.60 0.15 -3.04 16 5 C 0.13 4.39 5.56 86.38 0.48 4.87 16 6 N -0.71 -17.59 5.45 -463.05 -2.52 -20.12 16 7 C 0.50 13.98 7.15 87.66 0.63 14.61 16 8 O -0.60 -24.05 15.92 -3.05 -0.05 -24.10 16 9 C -0.10 -1.57 2.72 -11.54 -0.03 -1.60 16 10 H 0.13 1.27 8.14 -2.38 -0.02 1.25 16 11 C -0.14 -1.70 8.85 71.98 0.64 -1.06 16 12 C -0.09 -1.68 4.01 30.59 0.12 -1.56 16 13 C -0.07 -0.82 5.10 29.85 0.15 -0.67 16 14 C -0.06 -0.88 5.13 -19.87 -0.10 -0.98 16 15 C -0.13 -1.79 9.70 22.28 0.22 -1.58 16 16 C -0.09 -1.20 10.04 22.26 0.22 -0.97 16 17 C -0.17 -2.69 10.03 22.31 0.22 -2.46 16 18 C 0.07 1.40 7.30 22.38 0.16 1.57 16 19 F -0.15 -3.38 17.27 44.97 0.78 -2.60 16 20 C -0.16 -2.90 9.68 22.31 0.22 -2.68 16 21 N -0.73 -36.47 4.57 -322.94 -1.48 -37.94 16 22 C -0.23 -13.04 9.93 84.03 0.83 -12.20 16 23 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 24 C -0.08 -4.67 5.50 84.86 0.47 -4.21 16 25 N -0.97 -60.64 13.06 21.65 0.28 -60.36 16 26 Si 0.97 47.65 29.55 68.60 2.03 49.68 16 27 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 28 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 29 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 30 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.03 1.40 7.75 -2.39 -0.02 1.38 16 37 H 0.42 6.57 7.89 -92.70 -0.73 5.84 16 38 H 0.10 0.59 6.57 -2.39 -0.02 0.57 16 39 H 0.07 0.70 7.56 -2.39 -0.02 0.69 16 40 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 41 H 0.05 1.13 7.96 -2.39 -0.02 1.11 16 42 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.09 0.75 8.08 -2.39 -0.02 0.73 16 44 H 0.10 0.71 6.51 -2.39 -0.02 0.70 16 45 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 46 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 47 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 48 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 49 H 0.37 19.94 7.80 -92.71 -0.72 19.21 16 50 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -78.82 414.95 3.71 -75.11 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: -0.52 Total: 30.41 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 5.19 Total: -10.08 kcal Atomic # 7 Polarization: -114.70 SS G_CDS: -3.72 Total: -118.42 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.05 Total: -24.10 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.78 Total: -2.60 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.68 kcal Total: -78.82 3.71 -75.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674257894.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.583 kcal (2) G-P(sol) polarization free energy of solvation -78.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds