Wall clock time and date at job start Tue Mar 31 2020 19:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47428 * 2 1 4 4 C 1.50703 * 109.46491 * 119.99618 * 2 1 3 5 5 O 1.21281 * 120.00038 * 120.00422 * 4 2 1 6 6 N 1.34774 * 120.00293 * 299.99785 * 4 2 1 7 7 C 1.46495 * 120.00333 * 185.05684 * 6 4 2 8 8 C 1.53005 * 109.45977 * 57.27335 * 7 6 4 9 9 O 1.42896 * 109.47173 * 54.81193 * 8 7 6 10 10 C 1.53036 * 109.46384 * 177.24594 * 7 6 4 11 11 C 1.53198 * 109.31304 * 58.62651 * 10 7 6 12 12 N 1.46929 * 108.76209 * 54.65731 * 11 10 7 13 13 C 1.36933 * 120.63064 * 126.36324 * 12 11 10 14 14 H 1.08000 * 119.99995 * 210.56906 * 13 12 11 15 15 C 1.38812 * 120.00003 * 30.56409 * 13 12 11 16 16 N 1.31617 * 119.99925 * 11.44547 * 15 13 12 17 17 Si 1.86802 * 120.00193 * 191.44941 * 15 13 12 18 18 H 1.48499 * 109.47283 * 59.99674 * 17 15 13 19 19 H 1.48498 * 109.47255 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46796 * 299.99943 * 17 15 13 21 21 C 1.46925 * 118.73883 * 306.38540 * 12 11 10 22 22 C 1.53035 * 109.46248 * 297.30246 * 7 6 4 23 23 C 1.50700 * 109.46948 * 239.99167 * 2 1 3 24 24 C 1.39865 * 126.04380 * 300.02767 * 23 2 1 25 25 N 1.30832 * 108.20081 * 179.97438 * 24 23 2 26 26 N 1.40084 * 108.21133 * 359.97438 * 25 24 23 27 27 C 1.46490 * 126.03867 * 180.02562 * 26 25 24 28 28 C 1.34946 * 107.92025 * 359.76195 * 26 25 24 29 29 H 1.09002 * 109.47061 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47023 * 300.00569 * 1 2 3 31 31 H 1.08996 * 109.46510 * 60.00454 * 1 2 3 32 32 H 0.97005 * 119.99663 * 5.05168 * 6 4 2 33 33 H 1.08996 * 109.47087 * 294.80938 * 8 7 6 34 34 H 1.09007 * 109.47270 * 174.81012 * 8 7 6 35 35 H 0.96698 * 114.00131 * 180.02562 * 9 8 7 36 36 H 1.09001 * 109.50013 * 178.59322 * 10 7 6 37 37 H 1.09001 * 109.50000 * 298.69115 * 10 7 6 38 38 H 1.08997 * 109.59691 * 294.87268 * 11 10 7 39 39 H 1.08993 * 109.58271 * 174.43609 * 11 10 7 40 40 H 0.97007 * 120.00143 * 179.97438 * 16 15 13 41 41 H 1.09002 * 109.58608 * 293.82134 * 21 12 11 42 42 H 1.09000 * 109.58614 * 173.39424 * 21 12 11 43 43 H 1.09007 * 109.49887 * 61.30523 * 22 7 6 44 44 H 1.08999 * 109.50161 * 181.40385 * 22 7 6 45 45 H 1.08000 * 125.89990 * 359.97438 * 24 23 2 46 46 H 1.09005 * 109.47350 * 89.97998 * 27 26 25 47 47 H 1.09006 * 109.47113 * 209.97606 * 27 26 25 48 48 H 1.08996 * 109.47437 * 329.97800 * 27 26 25 49 49 H 1.07999 * 126.13111 * 180.24208 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7296 -1.6965 1.1194 6 7 1.7067 -0.2498 2.4546 7 6 2.2835 -0.8722 3.6488 8 6 3.8103 -0.8105 3.5687 9 8 4.2226 0.5434 3.3717 10 6 1.8077 -0.1222 4.8950 11 6 0.2772 -0.1560 4.9533 12 7 -0.1675 -1.5547 4.8845 13 6 -1.0066 -2.0676 5.8373 14 1 -0.9527 -3.1145 6.0972 15 6 -1.9264 -1.2421 6.4691 16 7 -2.1520 -0.0314 6.0046 17 14 -2.8441 -1.8492 7.9787 18 1 -1.8701 -2.1856 9.0480 19 1 -3.7619 -0.7861 8.4609 20 1 -3.6302 -3.0590 7.6267 21 6 0.3057 -2.3927 3.7743 22 6 1.8358 -2.3334 3.7291 23 6 2.0324 -0.7106 -1.2304 24 6 1.7731 -2.0409 -1.5759 25 7 2.3769 -2.2939 -2.7087 26 7 3.0400 -1.1308 -3.1207 27 6 3.8386 -0.9799 -4.3395 28 6 2.8084 -0.1723 -2.1995 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 1.0903 0.4938 2.5449 33 1 4.1552 -1.4206 2.7339 34 1 4.2384 -1.1894 4.4968 35 1 5.1809 0.6578 3.3111 36 1 2.2165 -0.5999 5.7854 37 1 2.1470 0.9127 4.8486 38 1 -0.1331 0.3997 4.1102 39 1 -0.0627 0.2900 5.8879 40 1 -2.7951 0.5454 6.4459 41 1 -0.1023 -2.0193 2.8350 42 1 -0.0156 -3.4224 3.9310 43 1 2.1951 -2.8727 2.8526 44 1 2.2444 -2.7901 4.6305 45 1 1.1774 -2.7386 -1.0061 46 1 3.1971 -0.6460 -5.1552 47 1 4.6241 -0.2434 -4.1704 48 1 4.2886 -1.9378 -4.6000 49 1 3.1784 0.8419 -2.2289 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674334666.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:05 Heat of formation + Delta-G solvation = 19.221304 kcal Electronic energy + Delta-G solvation = -30995.692150 eV Core-core repulsion = 26960.479097 eV Total energy + Delta-G solvation = -4035.213052 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.28258 -39.99661 -37.52750 -36.05729 -34.32726 -33.94148 -32.73081 -31.65382 -30.26633 -29.82056 -29.21513 -26.65763 -26.52857 -24.29175 -23.79235 -22.25674 -21.53520 -21.08192 -20.54984 -19.46629 -18.57653 -17.25680 -17.04414 -16.59406 -16.35962 -15.45245 -15.09011 -14.87886 -14.79206 -14.44405 -14.22204 -14.06745 -13.74168 -13.47550 -13.25186 -13.05721 -12.94745 -12.85281 -12.70843 -12.53738 -12.39725 -11.99258 -11.72701 -11.54241 -11.49624 -11.33111 -11.15263 -10.89445 -10.71686 -10.44931 -10.39848 -10.23284 -9.98548 -9.77421 -9.64903 -9.54359 -9.36888 -8.90112 -8.49075 -8.40560 -8.32496 -6.59046 -5.76588 -3.22500 1.89327 2.50633 2.85378 3.13011 3.39432 3.44608 3.45969 3.72532 4.42027 4.49390 4.52770 4.75561 4.91609 4.93571 5.01984 5.16158 5.25594 5.30579 5.37885 5.40942 5.47310 5.59799 5.61925 5.71005 5.75812 5.79392 5.84850 5.99874 6.04526 6.13729 6.17441 6.32925 6.38027 6.39575 6.64331 6.65556 6.70887 6.73067 6.87495 6.98277 7.01202 7.16648 7.35140 7.66843 7.74029 7.80573 7.82740 8.09724 8.49785 8.75116 9.24944 9.86851 10.44954 11.31437 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018081 B = 0.003137 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.234702 B = 8924.072435 C = 9602.090449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.031 4.031 3 H 0.096 0.904 4 C 0.524 3.476 5 O -0.542 6.542 6 N -0.699 5.699 7 C 0.195 3.805 8 C 0.064 3.936 9 O -0.566 6.566 10 C -0.143 4.143 11 C 0.174 3.826 12 N -0.591 5.591 13 C -0.250 4.250 14 H 0.063 0.937 15 C 0.003 3.997 16 N -0.906 5.906 17 Si 0.904 3.096 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.283 1.283 21 C 0.154 3.846 22 C -0.143 4.143 23 C -0.206 4.206 24 C 0.084 3.916 25 N -0.305 5.305 26 N -0.383 5.383 27 C 0.106 3.894 28 C 0.054 3.946 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.400 0.600 33 H 0.062 0.938 34 H 0.043 0.957 35 H 0.368 0.632 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.016 0.984 39 H 0.091 0.909 40 H 0.254 0.746 41 H 0.018 0.982 42 H 0.051 0.949 43 H 0.075 0.925 44 H 0.061 0.939 45 H 0.179 0.821 46 H 0.071 0.929 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.277 4.052 -15.461 20.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.054 4.054 3 H 0.114 0.886 4 C 0.309 3.691 5 O -0.420 6.420 6 N -0.350 5.350 7 C 0.109 3.891 8 C -0.015 4.015 9 O -0.370 6.370 10 C -0.183 4.183 11 C 0.048 3.952 12 N -0.314 5.314 13 C -0.380 4.380 14 H 0.081 0.919 15 C -0.195 4.195 16 N -0.551 5.551 17 Si 0.734 3.266 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.209 1.209 21 C 0.028 3.972 22 C -0.183 4.183 23 C -0.218 4.218 24 C -0.102 4.102 25 N -0.126 5.126 26 N -0.166 5.166 27 C -0.036 4.036 28 C -0.092 4.092 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.236 0.764 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.213 0.787 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.034 0.966 39 H 0.109 0.891 40 H 0.064 0.936 41 H 0.036 0.964 42 H 0.069 0.931 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.196 0.804 46 H 0.089 0.911 47 H 0.102 0.898 48 H 0.105 0.895 49 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 12.333 2.707 -16.480 20.761 hybrid contribution -0.228 0.674 1.504 1.664 sum 12.105 3.382 -14.977 19.551 Atomic orbital electron populations 1.21766 0.92333 1.03116 1.02515 1.19538 0.97052 0.99063 0.89740 0.88619 1.20342 0.80071 0.84355 0.84298 1.90592 1.38782 1.25911 1.86730 1.45926 1.47653 1.36588 1.04857 1.20234 0.89333 0.94108 0.85424 1.22736 0.95858 0.83067 0.99812 1.86481 1.26703 1.27546 1.96285 1.22467 1.01577 0.99066 0.95154 1.20766 0.86838 0.85969 1.01674 1.44020 1.53837 1.08151 1.25416 1.19146 1.10624 0.94924 1.13285 0.91944 1.25105 0.97090 0.97164 1.00132 1.69950 1.36310 1.08501 1.40312 0.86356 0.79462 0.77737 0.83082 1.21082 1.21664 1.20944 1.20794 0.90343 0.95105 0.90992 1.22385 0.99865 0.94273 1.01806 1.19480 1.08110 0.95380 0.98795 1.23636 0.97995 0.95741 0.92838 1.77349 1.13865 1.05688 1.15693 1.48337 1.40722 1.08349 1.19162 1.21765 0.94284 1.03855 0.83712 1.22189 1.00371 0.95531 0.91106 0.91882 0.91527 0.91847 0.76415 0.91977 0.93835 0.78651 0.91564 0.92039 0.96589 0.89130 0.93631 0.96364 0.93064 0.90670 0.92003 0.80406 0.91089 0.89796 0.89522 0.81302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.98 37.16 0.33 -1.32 16 2 C -0.03 -0.39 3.10 -92.92 -0.29 -0.68 16 3 H 0.10 1.01 8.11 -51.93 -0.42 0.59 16 4 C 0.52 8.11 6.52 -10.99 -0.07 8.04 16 5 O -0.54 -9.78 11.68 5.56 0.06 -9.71 16 6 N -0.70 -11.13 3.81 -47.57 -0.18 -11.31 16 7 C 0.20 3.35 0.44 -131.78 -0.06 3.29 16 8 C 0.06 0.99 5.59 37.16 0.21 1.19 16 9 O -0.57 -8.02 12.94 -35.23 -0.46 -8.48 16 10 C -0.14 -2.68 4.88 -26.61 -0.13 -2.81 16 11 C 0.17 3.93 4.99 -3.71 -0.02 3.91 16 12 N -0.59 -14.41 2.99 -172.32 -0.51 -14.93 16 13 C -0.25 -6.76 9.59 -15.06 -0.14 -6.91 16 14 H 0.06 1.68 7.85 -52.49 -0.41 1.26 16 15 C 0.00 0.09 5.04 -17.43 -0.09 0.00 16 16 N -0.91 -25.53 11.03 55.49 0.61 -24.92 16 17 Si 0.90 21.53 29.57 -169.99 -5.03 16.50 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 C 0.15 3.28 6.26 -3.71 -0.02 3.26 16 22 C -0.14 -2.66 4.71 -26.61 -0.13 -2.79 16 23 C -0.21 -2.67 4.36 -105.05 -0.46 -3.13 16 24 C 0.08 1.22 10.77 -17.37 -0.19 1.03 16 25 N -0.30 -4.46 12.57 30.62 0.39 -4.08 16 26 N -0.38 -4.44 4.01 -68.17 -0.27 -4.71 16 27 C 0.11 0.71 11.47 59.84 0.69 1.40 16 28 C 0.05 0.59 11.38 -17.22 -0.20 0.40 16 29 H 0.06 0.81 8.02 -51.93 -0.42 0.39 16 30 H 0.07 0.81 7.46 -51.93 -0.39 0.42 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.40 6.25 6.47 -40.82 -0.26 5.98 16 33 H 0.06 1.03 6.31 -51.93 -0.33 0.70 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.37 3.57 9.12 45.56 0.42 3.99 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.06 1.10 7.79 -51.93 -0.40 0.69 16 38 H 0.02 0.37 6.88 -51.93 -0.36 0.01 16 39 H 0.09 2.34 6.06 -51.93 -0.31 2.03 16 40 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.02 0.40 7.74 -51.93 -0.40 0.00 16 42 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 43 H 0.07 1.41 6.24 -51.93 -0.32 1.09 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.18 2.50 8.06 -52.49 -0.42 2.08 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 385.39 15.07 5.81 5.81 Total: -1.00 -33.59 385.39 -7.11 -40.70 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -6.97 Total: 10.25 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -0.56 Total: 4.89 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: 0.03 Total: -59.96 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.39 Total: -18.19 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.59 -7.11 -40.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674334666.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.923 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds