Wall clock time and date at job start Tue Mar 31 2020 19:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47428 * 2 1 4 4 C 1.50703 * 109.46491 * 119.99618 * 2 1 3 5 5 O 1.21281 * 120.00038 * 120.00422 * 4 2 1 6 6 N 1.34774 * 120.00293 * 299.99785 * 4 2 1 7 7 C 1.46495 * 120.00333 * 185.05684 * 6 4 2 8 8 C 1.53005 * 109.45977 * 57.27335 * 7 6 4 9 9 O 1.42896 * 109.47173 * 54.81193 * 8 7 6 10 10 C 1.53036 * 109.46384 * 177.24594 * 7 6 4 11 11 C 1.53198 * 109.31304 * 58.62651 * 10 7 6 12 12 N 1.46929 * 108.76209 * 54.65731 * 11 10 7 13 13 C 1.36933 * 120.63064 * 126.36324 * 12 11 10 14 14 H 1.08000 * 119.99995 * 210.56906 * 13 12 11 15 15 C 1.38812 * 120.00003 * 30.56409 * 13 12 11 16 16 N 1.31617 * 119.99925 * 11.44547 * 15 13 12 17 17 Si 1.86802 * 120.00193 * 191.44941 * 15 13 12 18 18 H 1.48499 * 109.47283 * 59.99674 * 17 15 13 19 19 H 1.48498 * 109.47255 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46796 * 299.99943 * 17 15 13 21 21 C 1.46925 * 118.73883 * 306.38540 * 12 11 10 22 22 C 1.53035 * 109.46248 * 297.30246 * 7 6 4 23 23 C 1.50700 * 109.46948 * 239.99167 * 2 1 3 24 24 C 1.39865 * 126.04380 * 300.02767 * 23 2 1 25 25 N 1.30832 * 108.20081 * 179.97438 * 24 23 2 26 26 N 1.40084 * 108.21133 * 359.97438 * 25 24 23 27 27 C 1.46490 * 126.03867 * 180.02562 * 26 25 24 28 28 C 1.34946 * 107.92025 * 359.76195 * 26 25 24 29 29 H 1.09002 * 109.47061 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47023 * 300.00569 * 1 2 3 31 31 H 1.08996 * 109.46510 * 60.00454 * 1 2 3 32 32 H 0.97005 * 119.99663 * 5.05168 * 6 4 2 33 33 H 1.08996 * 109.47087 * 294.80938 * 8 7 6 34 34 H 1.09007 * 109.47270 * 174.81012 * 8 7 6 35 35 H 0.96698 * 114.00131 * 180.02562 * 9 8 7 36 36 H 1.09001 * 109.50013 * 178.59322 * 10 7 6 37 37 H 1.09001 * 109.50000 * 298.69115 * 10 7 6 38 38 H 1.08997 * 109.59691 * 294.87268 * 11 10 7 39 39 H 1.08993 * 109.58271 * 174.43609 * 11 10 7 40 40 H 0.97007 * 120.00143 * 179.97438 * 16 15 13 41 41 H 1.09002 * 109.58608 * 293.82134 * 21 12 11 42 42 H 1.09000 * 109.58614 * 173.39424 * 21 12 11 43 43 H 1.09007 * 109.49887 * 61.30523 * 22 7 6 44 44 H 1.08999 * 109.50161 * 181.40385 * 22 7 6 45 45 H 1.08000 * 125.89990 * 359.97438 * 24 23 2 46 46 H 1.09005 * 109.47350 * 89.97998 * 27 26 25 47 47 H 1.09006 * 109.47113 * 209.97606 * 27 26 25 48 48 H 1.08996 * 109.47437 * 329.97800 * 27 26 25 49 49 H 1.07999 * 126.13111 * 180.24208 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7296 -1.6965 1.1194 6 7 1.7067 -0.2498 2.4546 7 6 2.2835 -0.8722 3.6488 8 6 3.8103 -0.8105 3.5687 9 8 4.2226 0.5434 3.3717 10 6 1.8077 -0.1222 4.8950 11 6 0.2772 -0.1560 4.9533 12 7 -0.1675 -1.5547 4.8845 13 6 -1.0066 -2.0676 5.8373 14 1 -0.9527 -3.1145 6.0972 15 6 -1.9264 -1.2421 6.4691 16 7 -2.1520 -0.0314 6.0046 17 14 -2.8441 -1.8492 7.9787 18 1 -1.8701 -2.1856 9.0480 19 1 -3.7619 -0.7861 8.4609 20 1 -3.6302 -3.0590 7.6267 21 6 0.3057 -2.3927 3.7743 22 6 1.8358 -2.3334 3.7291 23 6 2.0324 -0.7106 -1.2304 24 6 1.7731 -2.0409 -1.5759 25 7 2.3769 -2.2939 -2.7087 26 7 3.0400 -1.1308 -3.1207 27 6 3.8386 -0.9799 -4.3395 28 6 2.8084 -0.1723 -2.1995 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 1.0903 0.4938 2.5449 33 1 4.1552 -1.4206 2.7339 34 1 4.2384 -1.1894 4.4968 35 1 5.1809 0.6578 3.3111 36 1 2.2165 -0.5999 5.7854 37 1 2.1470 0.9127 4.8486 38 1 -0.1331 0.3997 4.1102 39 1 -0.0627 0.2900 5.8879 40 1 -2.7951 0.5454 6.4459 41 1 -0.1023 -2.0193 2.8350 42 1 -0.0156 -3.4224 3.9310 43 1 2.1951 -2.8727 2.8526 44 1 2.2444 -2.7901 4.6305 45 1 1.1774 -2.7386 -1.0061 46 1 3.1971 -0.6460 -5.1552 47 1 4.6241 -0.2434 -4.1704 48 1 4.2886 -1.9378 -4.6000 49 1 3.1784 0.8419 -2.2289 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674334666.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:04 Heat of formation + Delta-G solvation = -5.029405 kcal Electronic energy + Delta-G solvation = -30996.743739 eV Core-core repulsion = 26960.479097 eV Total energy + Delta-G solvation = -4036.264642 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.23159 -41.29995 -38.92976 -37.40128 -35.54305 -35.30906 -33.79560 -33.21443 -31.79359 -31.48487 -30.16799 -28.30366 -27.29363 -25.62279 -25.27745 -23.92408 -22.84526 -22.13383 -21.84213 -20.59451 -20.02278 -18.81718 -18.18781 -17.96219 -17.39286 -16.81331 -16.34486 -16.28765 -16.07362 -15.74896 -15.46759 -15.21038 -15.10467 -15.01205 -14.73993 -14.39766 -14.16765 -14.01811 -13.73123 -13.52744 -13.35630 -13.20388 -13.18694 -13.03054 -12.90992 -12.60323 -12.55069 -12.47031 -12.39369 -12.24956 -11.93750 -11.79032 -11.41571 -11.38055 -11.23124 -10.94245 -10.51104 -10.32498 -10.15237 -9.75806 -9.25006 -8.57810 -7.83175 -5.31880 1.01888 1.49181 1.50104 1.56885 1.76253 1.83251 1.92989 2.51087 2.54423 3.30356 3.36201 3.65263 3.75094 3.80003 4.02358 4.07012 4.08804 4.26410 4.30283 4.34437 4.43500 4.48845 4.49449 4.53936 4.59983 4.71226 4.72307 4.75244 4.80786 4.86782 4.89727 4.96846 5.04965 5.09534 5.18056 5.21222 5.26929 5.32214 5.39182 5.52296 5.66955 5.71543 5.78822 5.82326 6.23439 6.44955 6.79370 6.84625 6.93178 7.20560 7.52495 7.89471 8.42365 9.21882 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018081 B = 0.003137 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.234702 B = 8924.072435 C = 9602.090449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.020 4.020 3 H 0.123 0.877 4 C 0.522 3.478 5 O -0.568 6.568 6 N -0.699 5.699 7 C 0.196 3.804 8 C 0.077 3.923 9 O -0.573 6.573 10 C -0.126 4.126 11 C 0.183 3.817 12 N -0.605 5.605 13 C -0.265 4.265 14 H 0.059 0.941 15 C -0.043 4.043 16 N -0.929 5.929 17 Si 0.965 3.035 18 H -0.279 1.279 19 H -0.292 1.292 20 H -0.280 1.280 21 C 0.157 3.843 22 C -0.131 4.131 23 C -0.229 4.229 24 C 0.064 3.936 25 N -0.341 5.341 26 N -0.382 5.382 27 C 0.095 3.905 28 C 0.068 3.932 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.402 0.598 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.390 0.610 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.009 0.991 39 H 0.057 0.943 40 H 0.250 0.750 41 H 0.013 0.987 42 H 0.042 0.958 43 H 0.074 0.926 44 H 0.060 0.940 45 H 0.165 0.835 46 H 0.087 0.913 47 H 0.115 0.885 48 H 0.084 0.916 49 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.932 5.519 -16.453 22.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.042 4.042 3 H 0.141 0.859 4 C 0.309 3.691 5 O -0.448 6.448 6 N -0.350 5.350 7 C 0.109 3.891 8 C -0.001 4.001 9 O -0.380 6.380 10 C -0.165 4.165 11 C 0.057 3.943 12 N -0.329 5.329 13 C -0.395 4.395 14 H 0.077 0.923 15 C -0.239 4.239 16 N -0.575 5.575 17 Si 0.793 3.207 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.206 1.206 21 C 0.031 3.969 22 C -0.170 4.170 23 C -0.240 4.240 24 C -0.121 4.121 25 N -0.164 5.164 26 N -0.164 5.164 27 C -0.045 4.045 28 C -0.079 4.079 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.238 0.762 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.239 0.761 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.027 0.973 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.031 0.969 42 H 0.061 0.939 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.182 0.818 46 H 0.106 0.894 47 H 0.134 0.866 48 H 0.103 0.897 49 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 14.021 4.166 -17.500 22.808 hybrid contribution -0.698 0.216 1.707 1.857 sum 13.323 4.382 -15.794 21.122 Atomic orbital electron populations 1.21720 0.92225 1.02095 1.03157 1.19486 0.96952 0.99867 0.87910 0.85887 1.20904 0.79367 0.84007 0.84803 1.90581 1.40031 1.27092 1.87076 1.45916 1.47729 1.36578 1.04797 1.20115 0.91023 0.92660 0.85298 1.22433 0.94017 0.83752 0.99946 1.86419 1.28980 1.26373 1.96242 1.22224 0.98301 1.00120 0.95885 1.20569 0.89374 0.84827 0.99533 1.44215 1.53891 1.08958 1.25833 1.19409 1.11095 0.94995 1.14026 0.92347 1.25778 0.98043 0.97434 1.02664 1.70096 1.36789 1.09314 1.41310 0.85394 0.78207 0.77101 0.79991 1.20548 1.21804 1.20581 1.20796 0.92237 0.94074 0.89776 1.22200 0.97440 0.95756 1.01653 1.19590 1.09679 0.94965 0.99805 1.23605 0.98584 0.96674 0.93249 1.77262 1.15154 1.07805 1.16158 1.48742 1.39985 1.07508 1.20178 1.22166 0.94941 1.04875 0.82524 1.22798 0.98533 0.96801 0.89734 0.93771 0.92048 0.89923 0.76214 0.92925 0.92773 0.76108 0.92067 0.90655 0.97321 0.92485 0.94039 0.96903 0.93939 0.90736 0.92089 0.81770 0.89405 0.86625 0.89713 0.77144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.98 71.98 0.65 -2.43 16 2 C -0.02 -0.46 3.10 -12.28 -0.04 -0.50 16 3 H 0.12 2.19 8.11 -2.39 -0.02 2.17 16 4 C 0.52 15.70 6.52 87.66 0.57 16.27 16 5 O -0.57 -20.27 11.68 -3.03 -0.04 -20.30 16 6 N -0.70 -21.66 3.81 -422.82 -1.61 -23.27 16 7 C 0.20 6.54 0.44 3.63 0.00 6.54 16 8 C 0.08 2.24 5.59 71.98 0.40 2.64 16 9 O -0.57 -14.60 12.94 -148.98 -1.93 -16.53 16 10 C -0.13 -4.63 4.88 30.67 0.15 -4.48 16 11 C 0.18 8.39 4.99 86.36 0.43 8.82 16 12 N -0.61 -30.05 2.99 -699.08 -2.09 -32.14 16 13 C -0.26 -14.57 9.59 84.03 0.81 -13.77 16 14 H 0.06 3.19 7.85 -2.91 -0.02 3.17 16 15 C -0.04 -2.39 5.04 84.86 0.43 -1.96 16 16 N -0.93 -53.29 11.03 21.65 0.24 -53.06 16 17 Si 0.96 44.67 29.57 68.60 2.03 46.70 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 21 C 0.16 6.82 6.26 86.36 0.54 7.36 16 22 C -0.13 -4.85 4.71 30.67 0.14 -4.70 16 23 C -0.23 -5.61 4.36 -20.14 -0.09 -5.70 16 24 C 0.06 1.88 10.77 85.24 0.92 2.80 16 25 N -0.34 -9.93 12.57 -57.03 -0.72 -10.65 16 26 N -0.38 -8.03 4.01 -369.58 -1.48 -9.52 16 27 C 0.09 1.00 11.47 127.77 1.47 2.47 16 28 C 0.07 1.30 11.38 83.54 0.95 2.25 16 29 H 0.04 1.16 8.02 -2.39 -0.02 1.14 16 30 H 0.06 1.45 7.46 -2.39 -0.02 1.44 16 31 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.40 12.21 6.47 -92.70 -0.60 11.61 16 33 H 0.05 1.66 6.31 -2.39 -0.02 1.64 16 34 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.39 6.29 9.12 -74.06 -0.68 5.61 16 36 H 0.06 2.31 8.14 -2.39 -0.02 2.30 16 37 H 0.07 2.57 7.79 -2.39 -0.02 2.56 16 38 H 0.01 0.41 6.88 -2.39 -0.02 0.39 16 39 H 0.06 3.01 6.06 -2.39 -0.01 3.00 16 40 H 0.25 13.97 8.31 -92.70 -0.77 13.20 16 41 H 0.01 0.58 7.74 -2.39 -0.02 0.56 16 42 H 0.04 1.88 7.93 -2.39 -0.02 1.86 16 43 H 0.07 2.81 6.24 -2.38 -0.01 2.79 16 44 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.17 4.98 8.06 -2.91 -0.02 4.96 16 46 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 47 H 0.12 0.50 8.14 -2.38 -0.02 0.49 16 48 H 0.08 0.94 8.14 -2.39 -0.02 0.93 16 49 H 0.21 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -73.61 385.39 1.43 -72.18 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: -0.30 Total: 31.00 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 7.33 Total: 15.59 kcal Atomic # 7 Polarization: -122.97 SS G_CDS: -5.66 Total: -128.64 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -1.96 Total: -36.83 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -73.61 1.43 -72.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674334666.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.147 kcal (2) G-P(sol) polarization free energy of solvation -73.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds