Wall clock time and date at job start Tue Mar 31 2020 20:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09009 * 109.46862 * 2 1 4 4 C 1.52997 * 109.47240 * 240.00157 * 2 1 3 5 5 C 1.50696 * 109.47594 * 64.99824 * 4 2 1 6 6 C 1.38249 * 119.97160 * 89.99515 * 5 4 2 7 7 C 1.38196 * 120.02483 * 179.97438 * 6 5 4 8 8 C 1.38458 * 119.97492 * 0.02940 * 7 6 5 9 9 F 1.35104 * 120.02786 * 179.97438 * 8 7 6 10 10 C 1.38465 * 119.94675 * 0.24873 * 8 7 6 11 11 C 1.38197 * 119.97511 * 359.47283 * 10 8 7 12 12 C 1.50697 * 109.47244 * 119.99814 * 2 1 3 13 13 O 1.21278 * 120.00362 * 119.99714 * 12 2 1 14 14 N 1.34785 * 119.99912 * 300.00462 * 12 2 1 15 15 C 1.46496 * 119.99688 * 179.97438 * 14 12 2 16 16 H 1.08998 * 109.47794 * 325.00162 * 15 14 12 17 17 C 1.53000 * 109.46815 * 85.00444 * 15 14 12 18 18 C 1.53001 * 109.46960 * 204.99677 * 15 14 12 19 19 C 1.53005 * 109.46892 * 65.00462 * 18 15 14 20 20 C 1.53001 * 109.46892 * 179.97438 * 19 18 15 21 21 N 1.46505 * 109.46989 * 180.02562 * 20 19 18 22 22 C 1.36938 * 120.00060 * 179.97438 * 21 20 19 23 23 H 1.07996 * 119.99708 * 0.02562 * 22 21 20 24 24 C 1.38806 * 119.99802 * 179.97438 * 22 21 20 25 25 N 1.31623 * 120.00245 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00128 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47199 * 90.00026 * 26 24 22 28 28 H 1.48496 * 109.47566 * 210.00473 * 26 24 22 29 29 H 1.48503 * 109.46725 * 330.00524 * 26 24 22 30 30 H 1.08990 * 109.47205 * 300.00183 * 1 2 3 31 31 H 1.09008 * 109.46696 * 60.00481 * 1 2 3 32 32 H 1.08998 * 109.46753 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47031 * 304.99671 * 4 2 1 34 34 H 1.09007 * 109.47042 * 184.99980 * 4 2 1 35 35 H 1.08001 * 119.98900 * 359.97438 * 6 5 4 36 36 H 1.07996 * 120.01603 * 180.02562 * 7 6 5 37 37 H 1.08007 * 120.01049 * 179.72700 * 10 8 7 38 38 H 1.07994 * 119.98812 * 180.27364 * 11 10 8 39 39 H 0.96994 * 119.99823 * 359.97438 * 14 12 2 40 40 H 1.09008 * 109.46899 * 179.97438 * 17 15 14 41 41 H 1.09004 * 109.46936 * 299.99134 * 17 15 14 42 42 H 1.09000 * 109.47833 * 59.99686 * 17 15 14 43 43 H 1.09002 * 109.47436 * 185.00250 * 18 15 14 44 44 H 1.09000 * 109.47552 * 305.00359 * 18 15 14 45 45 H 1.09001 * 109.46918 * 299.99555 * 19 18 15 46 46 H 1.08997 * 109.47069 * 60.00384 * 19 18 15 47 47 H 1.09001 * 109.46976 * 299.99520 * 20 19 18 48 48 H 1.09000 * 109.47552 * 59.99897 * 20 19 18 49 49 H 0.96998 * 119.99631 * 359.97438 * 21 20 19 50 50 H 0.96998 * 120.00064 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0570 -2.4766 6 6 2.4820 1.0330 -2.9788 7 6 2.1178 1.7469 -4.1046 8 6 0.9102 1.4849 -4.7293 9 9 0.5528 2.1826 -5.8296 10 6 0.0666 0.5111 -4.2220 11 6 0.4355 -0.2055 -3.0994 12 6 2.0324 -0.7103 1.2304 13 8 2.7296 -1.6964 1.1193 14 7 1.7067 -0.2499 2.4546 15 6 2.1946 -0.9408 3.6507 16 1 2.2310 -2.0136 3.4613 17 6 3.5973 -0.4357 3.9948 18 6 1.2505 -0.6613 4.8218 19 6 -0.1199 -1.2761 4.5300 20 6 -1.0638 -0.9973 5.7014 21 7 -2.3758 -1.5865 5.4223 22 6 -3.3894 -1.4644 6.3349 23 1 -3.2217 -0.9335 7.2603 24 6 -4.6325 -2.0222 6.0702 25 7 -4.8370 -2.6689 4.9422 26 14 -6.0150 -1.8564 7.3154 27 1 -6.7871 -0.6190 7.0360 28 1 -6.9143 -3.0339 7.2165 29 1 -5.4426 -1.7842 8.6838 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6055 -1.7198 -1.2951 34 1 3.1265 -0.7994 -1.2055 35 1 3.4237 1.2376 -2.4911 36 1 2.7747 2.5090 -4.4970 37 1 -0.8776 0.3089 -4.7059 38 1 -0.2203 -0.9681 -2.7062 39 1 1.1493 0.5389 2.5435 40 1 3.9602 -0.9495 4.8851 41 1 4.2699 -0.6348 3.1605 42 1 3.5610 0.6371 4.1843 43 1 1.6597 -1.1011 5.7314 44 1 1.1449 0.4154 4.9545 45 1 -0.5291 -0.8364 3.6205 46 1 -0.0142 -2.3528 4.3975 47 1 -0.6543 -1.4374 6.6107 48 1 -1.1695 0.0794 5.8346 49 1 -2.5264 -2.0630 4.5910 50 1 -5.7056 -3.0590 4.7573 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676029355.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:53 Heat of formation + Delta-G solvation = -78.867954 kcal Electronic energy + Delta-G solvation = -28152.922328 eV Core-core repulsion = 24093.535845 eV Total energy + Delta-G solvation = -4059.386483 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.18817 -40.39368 -39.38127 -36.91927 -35.09042 -34.81614 -32.62399 -31.54744 -31.42886 -30.33589 -29.32339 -26.86368 -25.71656 -24.25888 -23.34313 -22.93246 -21.75568 -20.88453 -20.68822 -20.00851 -17.98638 -17.40140 -17.02298 -16.69487 -16.43969 -15.88679 -15.69027 -15.37481 -14.73581 -14.70984 -14.43048 -14.18360 -14.07610 -13.87117 -13.72865 -13.63800 -13.43620 -13.05412 -12.97702 -12.66072 -12.40670 -12.36561 -12.18861 -12.10870 -11.73357 -11.50762 -11.35577 -11.31155 -11.19740 -11.13421 -10.86719 -10.80557 -10.47986 -10.40945 -10.01920 -9.79055 -9.69017 -9.45012 -9.10131 -8.87080 -8.86482 -6.91872 -5.76581 -3.05233 0.77133 0.87016 2.58201 3.04465 3.27334 3.42961 3.47932 3.49917 3.93265 4.32535 4.34886 4.53836 4.56071 4.57565 4.69007 4.72867 4.86303 4.91575 4.98448 5.03504 5.14056 5.16383 5.40862 5.42990 5.52208 5.54608 5.56553 5.57406 5.59742 5.62061 5.70804 5.77308 5.78535 5.85951 5.92248 5.95906 5.99534 6.04857 6.11752 6.20349 6.22324 6.35019 6.40138 6.49184 6.54317 6.85834 6.89273 7.44779 7.69468 8.17005 8.42608 9.53388 10.12357 10.46671 11.46414 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010330 B = 0.002157 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.981256 B =12974.957730 C =15203.926454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.105 4.105 3 H 0.097 0.903 4 C -0.062 4.062 5 C -0.087 4.087 6 C -0.088 4.088 7 C -0.153 4.153 8 C 0.090 3.910 9 F -0.143 7.143 10 C -0.151 4.151 11 C -0.084 4.084 12 C 0.519 3.481 13 O -0.543 6.543 14 N -0.720 5.720 15 C 0.140 3.860 16 H 0.088 0.912 17 C -0.161 4.161 18 C -0.123 4.123 19 C -0.125 4.125 20 C 0.153 3.847 21 N -0.734 5.734 22 C -0.239 4.239 23 H 0.070 0.930 24 C -0.016 4.016 25 N -0.934 5.934 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.401 0.599 40 H 0.065 0.935 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.017 0.983 48 H 0.016 0.984 49 H 0.383 0.617 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.249 9.483 -16.388 26.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.126 4.126 3 H 0.115 0.885 4 C -0.100 4.100 5 C -0.088 4.088 6 C -0.106 4.106 7 C -0.171 4.171 8 C 0.071 3.929 9 F -0.121 7.121 10 C -0.170 4.170 11 C -0.102 4.102 12 C 0.305 3.695 13 O -0.420 6.420 14 N -0.371 5.371 15 C 0.036 3.964 16 H 0.106 0.894 17 C -0.220 4.220 18 C -0.161 4.161 19 C -0.163 4.163 20 C 0.025 3.975 21 N -0.378 5.378 22 C -0.370 4.370 23 H 0.088 0.912 24 C -0.211 4.211 25 N -0.583 5.583 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.208 1.208 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.235 0.765 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.035 0.965 48 H 0.034 0.966 49 H 0.217 0.783 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 18.646 8.825 -16.332 26.312 hybrid contribution -1.288 0.517 0.232 1.407 sum 17.358 9.342 -16.100 25.452 Atomic orbital electron populations 1.21901 0.92327 1.03408 1.03163 1.21283 0.98135 1.00661 0.92523 0.88524 1.20415 1.02269 0.98269 0.89006 1.19975 0.94565 0.97022 0.97188 1.20945 0.99728 0.94833 0.95118 1.21136 0.96119 1.02300 0.97584 1.17755 0.95243 0.94087 0.85779 1.91501 1.91992 1.77619 1.51006 1.21193 1.00535 0.96963 0.98309 1.21034 0.96023 0.98965 0.94191 1.20559 0.79801 0.84424 0.84690 1.90693 1.38173 1.26294 1.86869 1.46118 1.53436 1.32042 1.05527 1.21038 0.93042 0.98043 0.84272 0.89378 1.22168 0.96674 1.01295 1.01851 1.21852 0.95416 1.01601 0.97275 1.21724 0.93952 1.00919 0.99657 1.20652 0.86364 0.95846 0.94643 1.42378 1.07076 1.65978 1.22398 1.19240 0.90349 1.28842 0.98615 0.91228 1.24752 0.97869 1.00940 0.97579 1.69662 1.23181 1.41263 1.24178 0.86185 0.82308 0.77080 0.80604 1.21724 1.21747 1.20771 0.91666 0.91141 0.91553 0.89816 0.89868 0.85003 0.84851 0.84679 0.84673 0.76486 0.91603 0.92382 0.92590 0.90337 0.91472 0.92050 0.91996 0.96529 0.96606 0.78349 0.93524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.66 37.16 0.32 -0.94 16 2 C -0.10 -0.87 2.71 -91.77 -0.25 -1.12 16 3 H 0.10 0.65 8.14 -51.92 -0.42 0.23 16 4 C -0.06 -0.52 4.19 -27.89 -0.12 -0.63 16 5 C -0.09 -0.67 4.71 -104.62 -0.49 -1.17 16 6 C -0.09 -0.63 9.70 -39.59 -0.38 -1.01 16 7 C -0.15 -1.16 10.03 -39.52 -0.40 -1.55 16 8 C 0.09 0.80 7.30 -39.42 -0.29 0.51 16 9 F -0.14 -1.41 17.27 2.25 0.04 -1.37 16 10 C -0.15 -1.22 10.03 -39.51 -0.40 -1.62 16 11 C -0.08 -0.65 7.96 -39.59 -0.32 -0.96 16 12 C 0.52 5.81 7.12 -10.98 -0.08 5.73 16 13 O -0.54 -8.03 15.58 5.56 0.09 -7.94 16 14 N -0.72 -7.26 4.42 -53.81 -0.24 -7.50 16 15 C 0.14 1.53 2.57 -67.93 -0.17 1.36 16 16 H 0.09 1.16 7.58 -51.93 -0.39 0.76 16 17 C -0.16 -1.53 9.48 37.16 0.35 -1.18 16 18 C -0.12 -1.40 4.75 -26.73 -0.13 -1.53 16 19 C -0.12 -1.91 5.22 -26.73 -0.14 -2.05 16 20 C 0.15 3.01 6.26 -4.04 -0.03 2.99 16 21 N -0.73 -18.78 5.60 -59.91 -0.34 -19.12 16 22 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 23 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 24 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 25 N -0.93 -28.44 13.06 55.49 0.72 -27.72 16 26 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 30 H 0.06 0.54 7.56 -51.93 -0.39 0.15 16 31 H 0.07 0.54 6.27 -51.92 -0.33 0.21 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 34 H 0.08 0.72 7.90 -51.92 -0.41 0.31 16 35 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 36 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 37 H 0.14 0.91 8.06 -52.48 -0.42 0.48 16 38 H 0.14 0.90 8.04 -52.49 -0.42 0.48 16 39 H 0.40 3.35 8.02 -40.82 -0.33 3.02 16 40 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.94 7.75 -51.93 -0.40 0.54 16 46 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.38 10.31 7.67 -40.82 -0.31 9.99 16 50 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 413.60 15.07 6.23 6.23 Total: -1.00 -33.30 413.60 -9.72 -43.01 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -8.45 Total: 7.57 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -2.76 Total: -10.64 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: 0.15 Total: -54.33 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.09 Total: -7.94 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.30 -9.72 -43.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676029355.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.853 kcal (2) G-P(sol) polarization free energy of solvation -33.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds