Wall clock time and date at job start Tue Mar 31 2020 20:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09009 * 109.46862 * 2 1 4 4 C 1.52997 * 109.47240 * 240.00157 * 2 1 3 5 5 C 1.50696 * 109.47594 * 64.99824 * 4 2 1 6 6 C 1.38249 * 119.97160 * 89.99515 * 5 4 2 7 7 C 1.38196 * 120.02483 * 179.97438 * 6 5 4 8 8 C 1.38458 * 119.97492 * 0.02940 * 7 6 5 9 9 F 1.35104 * 120.02786 * 179.97438 * 8 7 6 10 10 C 1.38465 * 119.94675 * 0.24873 * 8 7 6 11 11 C 1.38197 * 119.97511 * 359.47283 * 10 8 7 12 12 C 1.50697 * 109.47244 * 119.99814 * 2 1 3 13 13 O 1.21278 * 120.00362 * 119.99714 * 12 2 1 14 14 N 1.34785 * 119.99912 * 300.00462 * 12 2 1 15 15 C 1.46496 * 119.99688 * 179.97438 * 14 12 2 16 16 H 1.08998 * 109.47794 * 325.00162 * 15 14 12 17 17 C 1.53000 * 109.46815 * 85.00444 * 15 14 12 18 18 C 1.53001 * 109.46960 * 204.99677 * 15 14 12 19 19 C 1.53005 * 109.46892 * 65.00462 * 18 15 14 20 20 C 1.53001 * 109.46892 * 179.97438 * 19 18 15 21 21 N 1.46505 * 109.46989 * 180.02562 * 20 19 18 22 22 C 1.36938 * 120.00060 * 179.97438 * 21 20 19 23 23 H 1.07996 * 119.99708 * 0.02562 * 22 21 20 24 24 C 1.38806 * 119.99802 * 179.97438 * 22 21 20 25 25 N 1.31623 * 120.00245 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00128 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47199 * 90.00026 * 26 24 22 28 28 H 1.48496 * 109.47566 * 210.00473 * 26 24 22 29 29 H 1.48503 * 109.46725 * 330.00524 * 26 24 22 30 30 H 1.08990 * 109.47205 * 300.00183 * 1 2 3 31 31 H 1.09008 * 109.46696 * 60.00481 * 1 2 3 32 32 H 1.08998 * 109.46753 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47031 * 304.99671 * 4 2 1 34 34 H 1.09007 * 109.47042 * 184.99980 * 4 2 1 35 35 H 1.08001 * 119.98900 * 359.97438 * 6 5 4 36 36 H 1.07996 * 120.01603 * 180.02562 * 7 6 5 37 37 H 1.08007 * 120.01049 * 179.72700 * 10 8 7 38 38 H 1.07994 * 119.98812 * 180.27364 * 11 10 8 39 39 H 0.96994 * 119.99823 * 359.97438 * 14 12 2 40 40 H 1.09008 * 109.46899 * 179.97438 * 17 15 14 41 41 H 1.09004 * 109.46936 * 299.99134 * 17 15 14 42 42 H 1.09000 * 109.47833 * 59.99686 * 17 15 14 43 43 H 1.09002 * 109.47436 * 185.00250 * 18 15 14 44 44 H 1.09000 * 109.47552 * 305.00359 * 18 15 14 45 45 H 1.09001 * 109.46918 * 299.99555 * 19 18 15 46 46 H 1.08997 * 109.47069 * 60.00384 * 19 18 15 47 47 H 1.09001 * 109.46976 * 299.99520 * 20 19 18 48 48 H 1.09000 * 109.47552 * 59.99897 * 20 19 18 49 49 H 0.96998 * 119.99631 * 359.97438 * 21 20 19 50 50 H 0.96998 * 120.00064 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0570 -2.4766 6 6 2.4820 1.0330 -2.9788 7 6 2.1178 1.7469 -4.1046 8 6 0.9102 1.4849 -4.7293 9 9 0.5528 2.1826 -5.8296 10 6 0.0666 0.5111 -4.2220 11 6 0.4355 -0.2055 -3.0994 12 6 2.0324 -0.7103 1.2304 13 8 2.7296 -1.6964 1.1193 14 7 1.7067 -0.2499 2.4546 15 6 2.1946 -0.9408 3.6507 16 1 2.2310 -2.0136 3.4613 17 6 3.5973 -0.4357 3.9948 18 6 1.2505 -0.6613 4.8218 19 6 -0.1199 -1.2761 4.5300 20 6 -1.0638 -0.9973 5.7014 21 7 -2.3758 -1.5865 5.4223 22 6 -3.3894 -1.4644 6.3349 23 1 -3.2217 -0.9335 7.2603 24 6 -4.6325 -2.0222 6.0702 25 7 -4.8370 -2.6689 4.9422 26 14 -6.0150 -1.8564 7.3154 27 1 -6.7871 -0.6190 7.0360 28 1 -6.9143 -3.0339 7.2165 29 1 -5.4426 -1.7842 8.6838 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6055 -1.7198 -1.2951 34 1 3.1265 -0.7994 -1.2055 35 1 3.4237 1.2376 -2.4911 36 1 2.7747 2.5090 -4.4970 37 1 -0.8776 0.3089 -4.7059 38 1 -0.2203 -0.9681 -2.7062 39 1 1.1493 0.5389 2.5435 40 1 3.9602 -0.9495 4.8851 41 1 4.2699 -0.6348 3.1605 42 1 3.5610 0.6371 4.1843 43 1 1.6597 -1.1011 5.7314 44 1 1.1449 0.4154 4.9545 45 1 -0.5291 -0.8364 3.6205 46 1 -0.0142 -2.3528 4.3975 47 1 -0.6543 -1.4374 6.6107 48 1 -1.1695 0.0794 5.8346 49 1 -2.5264 -2.0630 4.5910 50 1 -5.7056 -3.0590 4.7573 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676029355.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:53 Heat of formation + Delta-G solvation = -97.602578 kcal Electronic energy + Delta-G solvation = -28153.734722 eV Core-core repulsion = 24093.535845 eV Total energy + Delta-G solvation = -4060.198877 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.88041 -41.21971 -40.05894 -38.01678 -36.52728 -35.79240 -34.15670 -32.66698 -32.09687 -31.39010 -30.53024 -27.53281 -27.22759 -25.22837 -24.52183 -23.90432 -22.60049 -22.24804 -21.59941 -20.81239 -19.12042 -18.61926 -18.20636 -17.37008 -17.34124 -16.66724 -16.57655 -16.31683 -16.18920 -15.88136 -15.44732 -15.33849 -15.08975 -14.85978 -14.83572 -14.43535 -14.35535 -14.30546 -13.87623 -13.61425 -13.42771 -13.21323 -13.07694 -13.05229 -12.93163 -12.77129 -12.41345 -12.36786 -12.23025 -12.16158 -12.04679 -12.02884 -11.83926 -11.79872 -11.69076 -11.47487 -10.92990 -10.69505 -10.03187 -10.00363 -9.49979 -9.00137 -7.95709 -5.24814 0.14769 0.29614 1.47101 1.49030 1.57545 1.70290 2.26347 2.55821 2.64017 3.32031 3.37983 3.59458 3.69963 3.76703 3.89129 3.98113 3.99863 4.03003 4.13146 4.17696 4.31340 4.35774 4.38896 4.42271 4.48659 4.61202 4.71179 4.78152 4.83931 4.86871 4.88804 4.89206 4.95984 5.02640 5.03057 5.07768 5.15706 5.19173 5.21379 5.30323 5.31317 5.33538 5.40447 5.44472 5.51223 5.61831 5.64910 5.94948 6.27020 6.62624 7.32456 7.32610 8.10038 8.31991 9.28024 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010330 B = 0.002157 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.981256 B =12974.957730 C =15203.926454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 H 0.121 0.879 4 C -0.056 4.056 5 C -0.088 4.088 6 C -0.086 4.086 7 C -0.153 4.153 8 C 0.071 3.929 9 F -0.152 7.152 10 C -0.157 4.157 11 C -0.090 4.090 12 C 0.516 3.484 13 O -0.583 6.583 14 N -0.713 5.713 15 C 0.143 3.857 16 H 0.062 0.938 17 C -0.154 4.154 18 C -0.110 4.110 19 C -0.111 4.111 20 C 0.149 3.851 21 N -0.750 5.750 22 C -0.246 4.246 23 H 0.077 0.923 24 C -0.079 4.079 25 N -0.971 5.971 26 Si 0.975 3.025 27 H -0.285 1.285 28 H -0.296 1.296 29 H -0.269 1.269 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.411 0.589 40 H 0.075 0.925 41 H 0.044 0.956 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.060 0.940 46 H 0.044 0.956 47 H 0.018 0.982 48 H 0.026 0.974 49 H 0.372 0.628 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.111 11.323 -15.508 27.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 H 0.139 0.861 4 C -0.094 4.094 5 C -0.089 4.089 6 C -0.104 4.104 7 C -0.171 4.171 8 C 0.052 3.948 9 F -0.131 7.131 10 C -0.176 4.176 11 C -0.108 4.108 12 C 0.303 3.697 13 O -0.463 6.463 14 N -0.365 5.365 15 C 0.038 3.962 16 H 0.080 0.920 17 C -0.212 4.212 18 C -0.148 4.148 19 C -0.149 4.149 20 C 0.023 3.977 21 N -0.392 5.392 22 C -0.378 4.378 23 H 0.094 0.906 24 C -0.271 4.271 25 N -0.622 5.622 26 Si 0.803 3.197 27 H -0.212 1.212 28 H -0.223 1.223 29 H -0.194 1.194 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.170 0.830 36 H 0.168 0.832 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.248 0.752 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.079 0.921 46 H 0.063 0.937 47 H 0.036 0.964 48 H 0.044 0.956 49 H 0.203 0.797 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 19.532 10.711 -15.421 27.093 hybrid contribution -1.500 -0.059 -0.025 1.501 sum 18.032 10.653 -15.446 26.023 Atomic orbital electron populations 1.21880 0.92301 1.02567 1.03784 1.21259 0.97892 1.01449 0.91008 0.86097 1.20317 1.01949 0.97725 0.89402 1.19957 0.94742 0.97204 0.96953 1.21164 1.00256 0.94166 0.94844 1.21355 0.95817 1.02526 0.97450 1.18024 0.96145 0.94670 0.85984 1.91473 1.92169 1.77908 1.51573 1.21334 1.00945 0.96878 0.98447 1.21144 0.96310 0.99123 0.94193 1.21052 0.79095 0.83926 0.85604 1.90677 1.40116 1.28117 1.87435 1.46098 1.53154 1.32123 1.05143 1.20930 0.94061 0.96849 0.84326 0.91996 1.22087 0.94979 1.02391 1.01723 1.21752 0.92805 1.02515 0.97731 1.21580 0.95297 1.00187 0.97875 1.20865 0.84713 0.95756 0.96338 1.42646 1.08777 1.66234 1.21576 1.19668 0.91146 1.27903 0.99087 0.90551 1.25612 1.00495 1.01358 0.99608 1.69823 1.23490 1.42715 1.26153 0.85121 0.79045 0.76710 0.78783 1.21178 1.22250 1.19375 0.91386 0.90152 0.93145 0.91224 0.90121 0.82982 0.83231 0.83872 0.84092 0.75210 0.90646 0.93640 0.90892 0.89422 0.89396 0.92137 0.93743 0.96428 0.95624 0.79671 0.94002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 8.66 71.98 0.62 -1.72 16 2 C -0.10 -1.46 2.71 -11.54 -0.03 -1.49 16 3 H 0.12 1.31 8.14 -2.38 -0.02 1.29 16 4 C -0.06 -0.90 4.19 29.85 0.12 -0.78 16 5 C -0.09 -1.26 4.71 -19.86 -0.09 -1.36 16 6 C -0.09 -1.07 9.70 22.26 0.22 -0.85 16 7 C -0.15 -2.08 10.03 22.31 0.22 -1.86 16 8 C 0.07 1.20 7.30 22.38 0.16 1.36 16 9 F -0.15 -2.96 17.27 44.97 0.78 -2.18 16 10 C -0.16 -2.45 10.03 22.31 0.22 -2.23 16 11 C -0.09 -1.32 7.96 22.26 0.18 -1.15 16 12 C 0.52 11.19 7.12 87.65 0.62 11.82 16 13 O -0.58 -17.40 15.58 -3.02 -0.05 -17.45 16 14 N -0.71 -13.40 4.42 -442.54 -1.96 -15.35 16 15 C 0.14 2.94 2.57 44.99 0.12 3.05 16 16 H 0.06 1.63 7.58 -2.39 -0.02 1.61 16 17 C -0.15 -2.60 9.48 71.98 0.68 -1.91 16 18 C -0.11 -2.26 4.75 30.60 0.15 -2.11 16 19 C -0.11 -3.32 5.22 30.60 0.16 -3.16 16 20 C 0.15 5.74 6.26 86.38 0.54 6.28 16 21 N -0.75 -38.36 5.60 -343.44 -1.92 -40.28 16 22 C -0.25 -13.83 9.99 84.03 0.84 -12.99 16 23 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 24 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 25 N -0.97 -59.88 13.06 21.65 0.28 -59.60 16 26 Si 0.97 46.08 29.55 68.60 2.03 48.11 16 27 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 28 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 29 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 30 H 0.07 1.03 7.56 -2.39 -0.02 1.02 16 31 H 0.08 1.12 6.27 -2.38 -0.01 1.11 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 1.31 8.09 -2.38 -0.02 1.29 16 34 H 0.08 1.35 7.90 -2.38 -0.02 1.33 16 35 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 36 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 37 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 38 H 0.14 1.84 8.04 -2.91 -0.02 1.82 16 39 H 0.41 5.96 8.02 -92.71 -0.74 5.21 16 40 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.06 1.80 7.75 -2.39 -0.02 1.79 16 46 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 47 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.03 0.95 8.14 -2.39 -0.02 0.94 16 49 H 0.37 20.36 7.67 -92.71 -0.71 19.64 16 50 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -71.84 413.60 3.84 -68.00 By element: Atomic # 1 Polarization: 32.46 SS G_CDS: -0.52 Total: 31.93 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 5.20 Total: -13.18 kcal Atomic # 7 Polarization: -111.64 SS G_CDS: -3.60 Total: -115.24 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.05 Total: -17.45 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.78 Total: -2.18 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -71.84 3.84 -68.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676029355.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.598 kcal (2) G-P(sol) polarization free energy of solvation -71.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds