Wall clock time and date at job start Tue Mar 31 2020 21:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21498 * 120.00488 * 0.02562 * 7 6 5 9 9 C 1.48331 * 119.99628 * 180.02562 * 7 6 5 10 10 C 1.42271 * 126.93904 * 180.02562 * 9 7 6 11 11 C 1.35324 * 103.92429 * 179.97438 * 10 9 7 12 12 C 1.50691 * 126.66481 * 179.97438 * 11 10 9 13 13 N 1.46905 * 109.47166 * 90.00037 * 12 11 10 14 14 C 1.48534 * 110.99872 * 52.59680 * 13 12 11 15 15 C 1.54944 * 103.22389 * 159.72353 * 14 13 12 16 16 C 1.54595 * 102.92400 * 322.58723 * 15 14 13 17 17 C 1.47900 * 111.00465 * 169.99921 * 13 12 11 18 18 O 1.34015 * 106.66455 * 359.97438 * 11 10 9 19 19 N 1.20908 * 111.84769 * 359.70660 * 18 11 10 20 20 N 1.46497 * 109.47022 * 119.99544 * 2 1 3 21 21 C 1.36933 * 120.00376 * 275.00368 * 20 2 1 22 22 H 1.07998 * 120.00056 * 0.02562 * 21 20 2 23 23 C 1.38820 * 120.00147 * 180.02562 * 21 20 2 24 24 N 1.31619 * 119.99690 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99941 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47389 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47494 * 120.00297 * 25 23 21 28 28 H 1.48506 * 109.46820 * 239.99804 * 25 23 21 29 29 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 30 30 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 31 31 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 33 33 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 34 34 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 35 35 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 36 36 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 37 37 H 1.07999 * 128.03853 * 359.96823 * 10 9 7 38 38 H 1.09004 * 109.47246 * 209.99424 * 12 11 10 39 39 H 1.09000 * 109.47588 * 329.99925 * 12 11 10 40 40 H 1.08998 * 110.67400 * 278.16008 * 14 13 12 41 41 H 1.09000 * 110.66629 * 41.29264 * 14 13 12 42 42 H 1.09000 * 110.72082 * 204.23020 * 15 14 13 43 43 H 1.08997 * 110.72427 * 80.94851 * 15 14 13 44 44 H 1.08998 * 110.30762 * 263.04805 * 16 15 14 45 45 H 1.08996 * 110.31095 * 140.86988 * 16 15 14 46 46 H 1.08999 * 109.91111 * 333.50634 * 17 13 12 47 47 H 1.08997 * 109.92133 * 94.59852 * 17 13 12 48 48 H 0.97003 * 119.99849 * 95.00425 * 20 2 1 49 49 H 0.97004 * 120.00058 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 7 4.0534 -1.3042 -2.5094 7 6 5.3742 -1.3396 -2.7749 8 8 6.1599 -0.7987 -2.0224 9 6 5.8687 -2.0388 -3.9860 10 6 7.2218 -2.1672 -4.4066 11 6 7.1402 -2.8826 -5.5523 12 6 8.2883 -3.3119 -6.4289 13 7 8.7759 -4.6258 -5.9886 14 6 7.6631 -5.6062 -5.9059 15 6 8.3904 -6.9733 -5.9600 16 6 9.5379 -6.7150 -6.9633 17 6 9.7371 -5.1880 -6.9619 18 8 5.8399 -3.1351 -5.7560 19 7 5.1485 -2.6688 -4.8805 20 7 2.0183 -0.6905 1.1962 21 6 2.1490 -0.0074 2.3758 22 1 1.8917 1.0404 2.4244 23 6 2.6122 -0.6616 3.5091 24 7 2.9262 -1.9384 3.4497 25 14 2.7898 0.2701 5.1183 26 1 2.3749 1.6822 4.9211 27 1 1.9297 -0.3593 6.1524 28 1 4.2069 0.2282 5.5607 29 1 -0.3635 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6055 -0.2617 -2.1369 33 1 1.7517 -1.7714 -1.2056 34 1 3.9995 -1.0726 -0.4258 35 1 3.8532 0.4372 -1.3572 36 1 3.4261 -1.7357 -3.1104 37 1 8.1081 -1.7830 -3.9237 38 1 7.9509 -3.3776 -7.4633 39 1 9.0944 -2.5819 -6.3553 40 1 7.1217 -5.4954 -4.9664 41 1 6.9888 -5.4953 -6.7551 42 1 7.7224 -7.7511 -6.3299 43 1 8.7872 -7.2381 -4.9800 44 1 9.2549 -7.0587 -7.9582 45 1 10.4483 -7.2156 -6.6338 46 1 9.5371 -4.7866 -7.9554 47 1 10.7559 -4.9437 -6.6612 48 1 2.2490 -1.6317 1.1527 49 1 3.2496 -2.3957 4.2417 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690863004.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:10 Heat of formation + Delta-G solvation = 38.031216 kcal Electronic energy + Delta-G solvation = -28249.625002 eV Core-core repulsion = 24215.227609 eV Total energy + Delta-G solvation = -4034.397393 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.32311 -39.50743 -39.37323 -36.61598 -34.54369 -34.42265 -33.83462 -32.22979 -31.11510 -29.38923 -29.28106 -28.15195 -26.44535 -25.07918 -23.71164 -23.05400 -22.21231 -21.54565 -21.32709 -20.39064 -19.52281 -18.11195 -17.96506 -17.23938 -16.83483 -16.39170 -16.16706 -15.71058 -15.38347 -14.99818 -14.72276 -14.55256 -14.02394 -13.94139 -13.75015 -13.53286 -13.44691 -13.11409 -13.00808 -12.49478 -12.43210 -12.13503 -12.03834 -11.84971 -11.65077 -11.57104 -11.54269 -11.12745 -11.02305 -10.92249 -10.75603 -10.65722 -10.59709 -10.34669 -10.13478 -9.87604 -9.86666 -9.62239 -8.97925 -8.95580 -8.85974 -6.93093 -5.72793 -3.01578 0.89445 1.44935 2.57085 2.99235 3.18502 3.46792 3.51984 3.52324 3.54569 3.80782 4.07655 4.16378 4.36199 4.48120 4.60587 4.62975 4.78816 4.79869 4.94363 5.05630 5.12790 5.15348 5.21437 5.29273 5.33665 5.39197 5.39631 5.52591 5.57790 5.63348 5.66026 5.69146 5.72209 5.87363 6.06940 6.17725 6.28795 6.32340 6.36669 6.38725 6.43510 6.61536 6.69769 6.87282 7.07413 7.44544 7.74771 7.79501 8.15908 8.45385 9.56819 10.13355 10.47962 11.49884 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016673 B = 0.001930 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.992410 B =14502.246106 C =15222.878858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.050 0.950 4 C -0.133 4.133 5 C 0.121 3.879 6 N -0.711 5.711 7 C 0.591 3.409 8 O -0.516 6.516 9 C -0.020 4.020 10 C -0.155 4.155 11 C -0.041 4.041 12 C 0.131 3.869 13 N -0.514 5.514 14 C 0.030 3.970 15 C -0.124 4.124 16 C -0.131 4.131 17 C 0.036 3.964 18 O 0.119 5.881 19 N -0.330 5.330 20 N -0.724 5.724 21 C -0.237 4.237 22 H 0.071 0.929 23 C -0.014 4.014 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.293 1.293 28 H -0.292 1.292 29 H 0.054 0.946 30 H 0.035 0.965 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.402 0.598 37 H 0.183 0.817 38 H 0.063 0.937 39 H 0.114 0.886 40 H 0.082 0.918 41 H 0.052 0.948 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.049 0.951 47 H 0.084 0.916 48 H 0.383 0.617 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.061 -7.278 -27.742 30.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.068 0.932 4 C -0.172 4.172 5 C -0.001 4.001 6 N -0.362 5.362 7 C 0.374 3.626 8 O -0.390 6.390 9 C -0.179 4.179 10 C -0.178 4.178 11 C -0.104 4.104 12 C 0.002 3.998 13 N -0.239 5.239 14 C -0.097 4.097 15 C -0.162 4.162 16 C -0.169 4.169 17 C -0.092 4.092 18 O 0.043 5.957 19 N -0.031 5.031 20 N -0.366 5.366 21 C -0.368 4.368 22 H 0.089 0.911 23 C -0.210 4.210 24 N -0.580 5.580 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.219 1.219 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.237 0.763 37 H 0.200 0.800 38 H 0.081 0.919 39 H 0.132 0.868 40 H 0.100 0.900 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.093 0.907 46 H 0.067 0.933 47 H 0.103 0.897 48 H 0.217 0.783 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.546 -6.825 -26.598 29.415 hybrid contribution 0.131 0.069 0.176 0.230 sum 10.677 -6.756 -26.423 29.288 Atomic orbital electron populations 1.22420 0.99054 1.00868 0.99985 1.20150 0.91944 0.95578 0.85924 0.93198 1.22072 0.93571 1.02013 0.99515 1.21581 0.94753 0.97238 0.86540 1.45998 1.06461 1.56071 1.27655 1.16864 0.83008 0.79949 0.82779 1.90846 1.55450 1.45092 1.47628 1.23660 0.92426 1.03261 0.98558 1.22458 0.97699 1.02043 0.95609 1.24128 0.85769 1.01654 0.98883 1.20741 0.91278 0.93249 0.94513 1.64981 1.12780 1.01193 1.44961 1.23319 0.93141 0.91434 1.01837 1.22479 0.96999 0.96475 1.00244 1.22404 0.99586 0.95187 0.99757 1.22910 0.97570 0.94698 0.94017 1.84766 1.15624 1.56762 1.38509 1.74163 1.18967 1.10771 0.99180 1.42466 1.78086 1.10667 1.05361 1.19269 1.36373 0.93884 0.87307 0.91121 1.24741 1.02195 0.95984 0.98088 1.69668 1.50949 1.08683 1.28749 0.86138 0.77309 0.78781 0.84094 1.20584 1.21993 1.21881 0.92671 0.94558 0.93505 0.91798 0.91471 0.89253 0.91331 0.76346 0.79999 0.91861 0.86845 0.89976 0.92994 0.90766 0.90463 0.91321 0.90719 0.93276 0.89738 0.78288 0.93606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.49 37.16 0.35 -2.53 16 2 C 0.17 3.38 2.89 -67.94 -0.20 3.19 16 3 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 4 C -0.13 -2.10 4.87 -26.74 -0.13 -2.23 16 5 C 0.12 2.08 5.56 -4.04 -0.02 2.06 16 6 N -0.71 -10.77 5.55 -61.09 -0.34 -11.11 16 7 C 0.59 9.78 7.85 -12.11 -0.10 9.68 16 8 O -0.52 -10.35 16.95 5.37 0.09 -10.26 16 9 C -0.02 -0.27 7.19 -82.53 -0.59 -0.86 16 10 C -0.16 -1.75 10.92 -39.07 -0.43 -2.18 16 11 C -0.04 -0.37 5.75 -35.35 -0.20 -0.58 16 12 C 0.13 0.80 5.59 -4.98 -0.03 0.77 16 13 N -0.51 -3.62 5.39 -231.89 -1.25 -4.87 16 14 C 0.03 0.22 5.42 -1.89 -0.01 0.21 16 15 C -0.12 -0.74 7.06 -24.87 -0.18 -0.91 16 16 C -0.13 -0.62 6.93 -25.37 -0.18 -0.79 16 17 C 0.04 0.18 6.70 -2.75 -0.02 0.16 16 18 O 0.12 1.26 10.98 17.25 0.19 1.45 16 19 N -0.33 -4.15 11.84 33.30 0.39 -3.75 16 20 N -0.72 -17.90 4.57 -53.43 -0.24 -18.14 16 21 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 22 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -28.54 13.06 55.49 0.72 -27.82 16 25 Si 0.91 22.84 29.55 -169.99 -5.02 17.81 16 26 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 28 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 1.88 7.75 -51.93 -0.40 1.48 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.40 5.18 8.23 -40.82 -0.34 4.84 16 37 H 0.18 1.86 8.06 -52.49 -0.42 1.44 16 38 H 0.06 0.29 7.81 -51.93 -0.41 -0.11 16 39 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.75 7.90 -51.93 -0.41 0.34 16 41 H 0.05 0.35 8.02 -51.93 -0.42 -0.06 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.05 0.19 7.57 -51.93 -0.39 -0.20 16 47 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.38 10.14 7.80 -40.82 -0.32 9.82 16 49 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 405.93 15.07 6.12 6.12 Total: -1.00 -33.21 405.93 -9.45 -42.66 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -8.14 Total: 9.18 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -1.97 Total: -1.28 kcal Atomic # 7 Polarization: -64.97 SS G_CDS: -0.71 Total: -65.69 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.28 Total: -8.81 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.21 -9.45 -42.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690863004.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.695 kcal (2) G-P(sol) polarization free energy of solvation -33.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds