Wall clock time and date at job start Tue Mar 31 2020 21:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21498 * 120.00488 * 0.02562 * 7 6 5 9 9 C 1.48331 * 119.99628 * 180.02562 * 7 6 5 10 10 C 1.42271 * 126.93904 * 180.02562 * 9 7 6 11 11 C 1.35324 * 103.92429 * 179.97438 * 10 9 7 12 12 C 1.50691 * 126.66481 * 179.97438 * 11 10 9 13 13 N 1.46905 * 109.47166 * 90.00037 * 12 11 10 14 14 C 1.48534 * 110.99872 * 52.59680 * 13 12 11 15 15 C 1.54944 * 103.22389 * 159.72353 * 14 13 12 16 16 C 1.54595 * 102.92400 * 322.58723 * 15 14 13 17 17 C 1.47900 * 111.00465 * 169.99921 * 13 12 11 18 18 O 1.34015 * 106.66455 * 359.97438 * 11 10 9 19 19 N 1.20908 * 111.84769 * 359.70660 * 18 11 10 20 20 N 1.46497 * 109.47022 * 119.99544 * 2 1 3 21 21 C 1.36933 * 120.00376 * 275.00368 * 20 2 1 22 22 H 1.07998 * 120.00056 * 0.02562 * 21 20 2 23 23 C 1.38820 * 120.00147 * 180.02562 * 21 20 2 24 24 N 1.31619 * 119.99690 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99941 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47389 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47494 * 120.00297 * 25 23 21 28 28 H 1.48506 * 109.46820 * 239.99804 * 25 23 21 29 29 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 30 30 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 31 31 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 33 33 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 34 34 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 35 35 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 36 36 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 37 37 H 1.07999 * 128.03853 * 359.96823 * 10 9 7 38 38 H 1.09004 * 109.47246 * 209.99424 * 12 11 10 39 39 H 1.09000 * 109.47588 * 329.99925 * 12 11 10 40 40 H 1.08998 * 110.67400 * 278.16008 * 14 13 12 41 41 H 1.09000 * 110.66629 * 41.29264 * 14 13 12 42 42 H 1.09000 * 110.72082 * 204.23020 * 15 14 13 43 43 H 1.08997 * 110.72427 * 80.94851 * 15 14 13 44 44 H 1.08998 * 110.30762 * 263.04805 * 16 15 14 45 45 H 1.08996 * 110.31095 * 140.86988 * 16 15 14 46 46 H 1.08999 * 109.91111 * 333.50634 * 17 13 12 47 47 H 1.08997 * 109.92133 * 94.59852 * 17 13 12 48 48 H 0.97003 * 119.99849 * 95.00425 * 20 2 1 49 49 H 0.97004 * 120.00058 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 7 4.0534 -1.3042 -2.5094 7 6 5.3742 -1.3396 -2.7749 8 8 6.1599 -0.7987 -2.0224 9 6 5.8687 -2.0388 -3.9860 10 6 7.2218 -2.1672 -4.4066 11 6 7.1402 -2.8826 -5.5523 12 6 8.2883 -3.3119 -6.4289 13 7 8.7759 -4.6258 -5.9886 14 6 7.6631 -5.6062 -5.9059 15 6 8.3904 -6.9733 -5.9600 16 6 9.5379 -6.7150 -6.9633 17 6 9.7371 -5.1880 -6.9619 18 8 5.8399 -3.1351 -5.7560 19 7 5.1485 -2.6688 -4.8805 20 7 2.0183 -0.6905 1.1962 21 6 2.1490 -0.0074 2.3758 22 1 1.8917 1.0404 2.4244 23 6 2.6122 -0.6616 3.5091 24 7 2.9262 -1.9384 3.4497 25 14 2.7898 0.2701 5.1183 26 1 2.3749 1.6822 4.9211 27 1 1.9297 -0.3593 6.1524 28 1 4.2069 0.2282 5.5607 29 1 -0.3635 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6055 -0.2617 -2.1369 33 1 1.7517 -1.7714 -1.2056 34 1 3.9995 -1.0726 -0.4258 35 1 3.8532 0.4372 -1.3572 36 1 3.4261 -1.7357 -3.1104 37 1 8.1081 -1.7830 -3.9237 38 1 7.9509 -3.3776 -7.4633 39 1 9.0944 -2.5819 -6.3553 40 1 7.1217 -5.4954 -4.9664 41 1 6.9888 -5.4953 -6.7551 42 1 7.7224 -7.7511 -6.3299 43 1 8.7872 -7.2381 -4.9800 44 1 9.2549 -7.0587 -7.9582 45 1 10.4483 -7.2156 -6.6338 46 1 9.5371 -4.7866 -7.9554 47 1 10.7559 -4.9437 -6.6612 48 1 2.2490 -1.6317 1.1527 49 1 3.2496 -2.3957 4.2417 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690863004.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:09 Heat of formation + Delta-G solvation = 13.861370 kcal Electronic energy + Delta-G solvation = -28250.673086 eV Core-core repulsion = 24215.227609 eV Total energy + Delta-G solvation = -4035.445476 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.26742 -40.85028 -39.85248 -38.21634 -36.03607 -35.30642 -34.71120 -34.10011 -31.82327 -31.10325 -29.78149 -29.69603 -27.07282 -26.31598 -25.62865 -24.08354 -23.46903 -22.19873 -21.75283 -21.71615 -20.89200 -19.29645 -19.01928 -18.80900 -17.98695 -17.13668 -16.94941 -16.87019 -16.68330 -16.43217 -15.70962 -15.57903 -15.43076 -15.34842 -14.91997 -14.60650 -14.44688 -14.19170 -14.14907 -13.62191 -13.58017 -13.27793 -13.01934 -12.87006 -12.71813 -12.66740 -12.40957 -12.35560 -12.27193 -12.19890 -12.12099 -12.02485 -11.79620 -11.64423 -11.62438 -11.42455 -11.39878 -10.96655 -10.69452 -10.31606 -9.44235 -8.99491 -7.93460 -5.20592 -0.08055 0.52847 1.45260 1.46721 1.55967 1.69005 1.87275 1.95528 2.56326 2.76789 3.04104 3.32351 3.40763 3.72754 3.79092 3.85369 3.86699 3.91839 4.00151 4.09907 4.17121 4.20419 4.30676 4.36273 4.51219 4.58887 4.62978 4.63791 4.69848 4.73167 4.82106 4.84090 4.92461 4.96459 4.98670 5.03855 5.10251 5.14078 5.20268 5.24863 5.32317 5.36422 5.53590 5.59354 5.82375 5.93251 6.20769 6.29358 6.82584 6.93078 7.35179 8.12423 8.33895 9.30322 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016673 B = 0.001930 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.992410 B =14502.246106 C =15222.878858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.165 3.835 3 H 0.047 0.953 4 C -0.117 4.117 5 C 0.132 3.868 6 N -0.699 5.699 7 C 0.589 3.411 8 O -0.561 6.561 9 C -0.043 4.043 10 C -0.170 4.170 11 C -0.016 4.016 12 C 0.130 3.870 13 N -0.532 5.532 14 C 0.029 3.971 15 C -0.125 4.125 16 C -0.128 4.128 17 C 0.035 3.965 18 O 0.133 5.867 19 N -0.336 5.336 20 N -0.735 5.735 21 C -0.231 4.231 22 H 0.076 0.924 23 C -0.081 4.081 24 N -0.971 5.971 25 Si 0.968 3.032 26 H -0.265 1.265 27 H -0.294 1.294 28 H -0.298 1.298 29 H 0.035 0.965 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.063 0.937 36 H 0.416 0.584 37 H 0.188 0.812 38 H 0.088 0.912 39 H 0.134 0.866 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.066 0.934 47 H 0.088 0.912 48 H 0.371 0.629 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.998 -6.953 -30.697 33.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.056 3.944 3 H 0.065 0.935 4 C -0.155 4.155 5 C 0.008 3.992 6 N -0.350 5.350 7 C 0.374 3.626 8 O -0.438 6.438 9 C -0.201 4.201 10 C -0.194 4.194 11 C -0.080 4.080 12 C 0.002 3.998 13 N -0.257 5.257 14 C -0.099 4.099 15 C -0.163 4.163 16 C -0.166 4.166 17 C -0.092 4.092 18 O 0.054 5.946 19 N -0.034 5.034 20 N -0.376 5.376 21 C -0.363 4.363 22 H 0.094 0.906 23 C -0.273 4.273 24 N -0.622 5.622 25 Si 0.798 3.202 26 H -0.189 1.189 27 H -0.221 1.221 28 H -0.226 1.226 29 H 0.054 0.946 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.123 0.877 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.253 0.747 37 H 0.205 0.795 38 H 0.106 0.894 39 H 0.152 0.848 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.100 0.900 43 H 0.083 0.917 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.085 0.915 47 H 0.106 0.894 48 H 0.203 0.797 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.421 -6.465 -29.598 32.039 hybrid contribution 0.165 -0.051 0.939 0.955 sum 10.586 -6.516 -28.659 31.239 Atomic orbital electron populations 1.22257 0.97006 1.01041 1.00978 1.20448 0.93247 0.95292 0.85374 0.93505 1.21935 0.92162 1.02167 0.99286 1.21285 0.95701 0.96500 0.85677 1.45832 1.06538 1.55611 1.27050 1.17240 0.82882 0.79337 0.83170 1.90812 1.56486 1.47110 1.49382 1.23356 0.93713 1.04696 0.98320 1.22608 0.96980 1.03196 0.96601 1.24614 0.85631 0.99580 0.98130 1.21010 0.90555 0.93364 0.94839 1.64967 1.12965 1.01452 1.46365 1.23274 0.93446 0.92427 1.00759 1.22478 0.97626 0.96065 1.00168 1.22415 0.99093 0.95203 0.99932 1.22975 0.97121 0.94711 0.94362 1.84743 1.16402 1.55830 1.37606 1.74147 1.19392 1.10665 0.99216 1.42669 1.78372 1.10232 1.06336 1.19652 1.34168 0.94152 0.88340 0.90594 1.25528 1.03381 0.96916 1.01464 1.69823 1.52995 1.10235 1.29154 0.85137 0.76570 0.78326 0.80175 1.18915 1.22143 1.22573 0.94611 0.90598 0.93737 0.87705 0.91169 0.93744 0.91892 0.74747 0.79474 0.89444 0.84850 0.92525 0.92256 0.89962 0.91742 0.90057 0.90402 0.91530 0.89376 0.79716 0.94302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.10 9.49 71.98 0.68 -4.42 16 2 C 0.16 6.24 2.89 44.99 0.13 6.37 16 3 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 4 C -0.12 -3.53 4.87 30.59 0.15 -3.38 16 5 C 0.13 4.59 5.56 86.38 0.48 5.07 16 6 N -0.70 -21.26 5.55 -465.50 -2.59 -23.85 16 7 C 0.59 20.03 7.85 86.93 0.68 20.71 16 8 O -0.56 -23.55 16.95 -3.71 -0.06 -23.61 16 9 C -0.04 -1.19 7.19 42.96 0.31 -0.88 16 10 C -0.17 -3.78 10.92 22.60 0.25 -3.53 16 11 C -0.02 -0.27 5.75 25.01 0.14 -0.12 16 12 C 0.13 1.22 5.59 85.55 0.48 1.70 16 13 N -0.53 -6.41 5.39 -887.56 -4.78 -11.20 16 14 C 0.03 0.38 5.42 86.65 0.47 0.85 16 15 C -0.13 -1.35 7.06 31.80 0.22 -1.13 16 16 C -0.13 -0.93 6.93 31.47 0.22 -0.71 16 17 C 0.04 0.26 6.70 86.45 0.58 0.84 16 18 O 0.13 2.60 10.98 71.88 0.79 3.39 16 19 N -0.34 -8.16 11.84 -49.50 -0.59 -8.74 16 20 N -0.74 -36.92 4.57 -322.96 -1.48 -38.40 16 21 C -0.23 -12.99 9.93 84.04 0.83 -12.15 16 22 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 23 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 24 N -0.97 -61.29 13.06 21.65 0.28 -61.01 16 25 Si 0.97 47.80 29.55 68.60 2.03 49.82 16 26 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 27 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 28 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 29 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.04 1.97 7.75 -2.39 -0.02 1.95 16 35 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.42 10.32 8.23 -92.71 -0.76 9.56 16 37 H 0.19 3.84 8.06 -2.91 -0.02 3.82 16 38 H 0.09 0.46 7.81 -2.38 -0.02 0.44 16 39 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.06 1.03 7.90 -2.39 -0.02 1.01 16 41 H 0.06 0.69 8.02 -2.39 -0.02 0.67 16 42 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.07 0.27 7.57 -2.39 -0.02 0.26 16 47 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.37 20.25 7.80 -92.71 -0.72 19.53 16 49 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -74.60 405.93 -0.83 -75.43 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: -0.53 Total: 33.26 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 6.10 Total: 4.91 kcal Atomic # 7 Polarization: -134.04 SS G_CDS: -9.15 Total: -143.19 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: 0.73 Total: -20.22 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.82 kcal Total: -74.60 -0.83 -75.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690863004.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.286 kcal (2) G-P(sol) polarization free energy of solvation -74.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds