Wall clock time and date at job start Tue Mar 31 2020 20:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 N 1.46499 * 109.47194 * 180.02562 * 5 4 2 7 7 C 1.36941 * 119.99832 * 180.02562 * 6 5 4 8 8 H 1.07998 * 120.00210 * 359.97438 * 7 6 5 9 9 C 1.38814 * 119.99738 * 179.97438 * 7 6 5 10 10 N 1.31611 * 120.00170 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99493 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47263 * 60.00099 * 11 9 7 13 13 H 1.48504 * 109.46714 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47358 * 299.99836 * 11 9 7 15 15 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 16 16 C 1.34769 * 119.99686 * 84.99974 * 15 2 1 17 17 O 1.21275 * 120.00678 * 0.02562 * 16 15 2 18 18 C 1.50701 * 119.99690 * 179.97438 * 16 15 2 19 19 H 1.08996 * 109.47353 * 300.00507 * 18 16 15 20 20 C 1.53006 * 109.46955 * 60.00305 * 18 16 15 21 21 C 1.52999 * 109.47228 * 179.97438 * 18 16 15 22 22 C 1.53004 * 109.47295 * 175.00187 * 21 18 16 23 23 C 1.50694 * 109.47251 * 180.02562 * 22 21 18 24 24 C 1.38247 * 119.97466 * 269.72981 * 23 22 21 25 25 C 1.38200 * 120.02673 * 179.72726 * 24 23 22 26 26 C 1.38463 * 119.97264 * 0.56441 * 25 24 23 27 27 F 1.35093 * 120.02592 * 179.68330 * 26 25 24 28 28 C 1.38454 * 119.94722 * 359.70590 * 26 25 24 29 29 C 1.38197 * 119.97713 * 0.02562 * 28 26 25 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 32 32 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 33 33 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 34 34 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 35 35 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 36 36 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 37 37 H 0.96997 * 120.00325 * 359.97438 * 6 5 4 38 38 H 0.97001 * 120.00048 * 180.02562 * 10 9 7 39 39 H 0.97000 * 119.99634 * 265.00306 * 15 2 1 40 40 H 1.09000 * 109.46977 * 299.99426 * 20 18 16 41 41 H 1.08996 * 109.47443 * 59.99845 * 20 18 16 42 42 H 1.09004 * 109.47114 * 179.97438 * 20 18 16 43 43 H 1.09000 * 109.47594 * 295.00396 * 21 18 16 44 44 H 1.09002 * 109.47031 * 55.00645 * 21 18 16 45 45 H 1.09000 * 109.46804 * 300.00063 * 22 21 18 46 46 H 1.09000 * 109.47056 * 59.99866 * 22 21 18 47 47 H 1.08004 * 119.98248 * 359.96951 * 24 23 22 48 48 H 1.07994 * 120.01123 * 180.24538 * 25 24 23 49 49 H 1.08005 * 120.01064 * 179.97438 * 28 26 25 50 50 H 1.08002 * 119.98703 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 7 4.0531 -1.3044 2.5097 7 6 5.3951 -1.3404 2.7796 8 1 6.0936 -0.8597 2.1107 9 6 5.8578 -1.9948 3.9131 10 7 5.0066 -2.5802 4.7285 11 14 7.6886 -2.0445 4.2809 12 1 8.2008 -0.6590 4.4324 13 1 7.9202 -2.7978 5.5395 14 1 8.3999 -2.7159 3.1636 15 7 2.0184 -0.6906 -1.1962 16 6 2.1472 -0.0183 -2.3570 17 8 1.8592 1.1585 -2.4115 18 6 2.6501 -0.7285 -3.5873 19 1 3.6494 -1.1204 -3.3977 20 6 1.7065 -1.8828 -3.9314 21 6 2.7009 0.2543 -4.7588 22 6 3.3277 -0.4323 -5.9739 23 6 3.3782 0.5359 -7.1275 24 6 2.3192 0.6113 -8.0130 25 6 2.3620 1.5029 -9.0680 26 6 3.4712 2.3127 -9.2448 27 9 3.5169 3.1801 -10.2795 28 6 4.5336 2.2323 -8.3607 29 6 4.4862 1.3439 -7.3031 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6053 -0.2617 2.1370 34 1 1.7516 -1.7715 1.2056 35 1 3.9994 -1.0728 0.4261 36 1 3.8531 0.4370 1.3574 37 1 3.4258 -1.7358 3.1107 38 1 5.3298 -3.0372 5.5207 39 1 2.2491 -1.6318 -1.1525 40 1 1.6700 -2.5832 -3.0970 41 1 0.7072 -1.4911 -4.1210 42 1 2.0701 -2.3963 -4.8215 43 1 1.6898 0.5779 -5.0057 44 1 3.3018 1.1202 -4.4807 45 1 4.3388 -0.7559 -5.7270 46 1 2.7269 -1.2983 -6.2520 47 1 1.4564 -0.0241 -7.8778 48 1 1.5329 1.5644 -9.7573 49 1 5.3995 2.8631 -8.4978 50 1 5.3147 1.2814 -6.6131 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699107483.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:28 Heat of formation + Delta-G solvation = -79.139294 kcal Electronic energy + Delta-G solvation = -27856.849059 eV Core-core repulsion = 23797.450809 eV Total energy + Delta-G solvation = -4059.398249 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.20601 -40.16844 -39.48604 -36.81718 -35.61377 -34.35566 -32.65848 -31.62728 -31.50368 -30.47640 -28.22442 -27.88046 -25.52509 -24.09619 -23.42821 -23.06163 -21.66001 -21.19962 -20.55816 -19.86930 -18.02599 -17.36138 -16.94546 -16.76834 -16.31344 -15.90499 -15.68871 -15.52735 -14.83709 -14.60081 -14.38854 -14.07242 -13.93713 -13.88772 -13.67276 -13.62908 -13.32599 -13.26368 -13.00244 -12.84770 -12.71904 -12.34622 -12.04297 -11.87842 -11.84280 -11.68078 -11.38699 -11.23879 -11.09086 -11.02503 -10.88095 -10.78541 -10.64568 -10.57702 -10.08406 -9.71989 -9.64555 -9.48158 -8.98273 -8.87119 -8.86148 -6.94287 -5.78335 -3.07149 0.77072 0.86000 2.70815 3.14485 3.29469 3.42695 3.47095 3.48157 3.91932 4.29075 4.31815 4.52375 4.53741 4.57911 4.66073 4.77088 4.86566 4.89329 4.94997 5.12877 5.17363 5.24575 5.28622 5.33547 5.36376 5.50955 5.53731 5.57065 5.58851 5.67844 5.71385 5.74330 5.75744 5.77767 5.87063 5.93065 5.95229 6.04458 6.10505 6.21234 6.23352 6.27626 6.33092 6.53227 6.58207 6.79907 6.85932 7.59757 7.67847 8.30455 8.40668 9.51629 10.09468 10.44130 11.44430 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013690 B = 0.001861 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.753401 B =15043.950905 C =16356.595288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.144 3.856 3 H 0.087 0.913 4 C -0.135 4.135 5 C 0.155 3.845 6 N -0.734 5.734 7 C -0.240 4.240 8 H 0.069 0.931 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 N -0.718 5.718 16 C 0.517 3.483 17 O -0.545 6.545 18 C -0.113 4.113 19 H 0.100 0.900 20 C -0.146 4.146 21 C -0.093 4.093 22 C -0.084 4.084 23 C -0.086 4.086 24 C -0.088 4.088 25 C -0.152 4.152 26 C 0.089 3.911 27 F -0.143 7.143 28 C -0.151 4.151 29 C -0.087 4.087 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.018 0.982 36 H 0.017 0.983 37 H 0.383 0.617 38 H 0.256 0.744 39 H 0.401 0.599 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.132 0.868 48 H 0.134 0.866 49 H 0.134 0.866 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.656 3.301 -26.897 28.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.039 3.961 3 H 0.105 0.895 4 C -0.173 4.173 5 C 0.027 3.973 6 N -0.378 5.378 7 C -0.372 4.372 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.739 3.261 12 H -0.213 1.213 13 H -0.217 1.217 14 H -0.213 1.213 15 N -0.370 5.370 16 C 0.303 3.697 17 O -0.422 6.422 18 C -0.135 4.135 19 H 0.118 0.882 20 C -0.203 4.203 21 C -0.131 4.131 22 C -0.121 4.121 23 C -0.087 4.087 24 C -0.106 4.106 25 C -0.171 4.171 26 C 0.070 3.930 27 F -0.121 7.121 28 C -0.170 4.170 29 C -0.105 4.105 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.036 0.964 36 H 0.035 0.965 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.236 0.764 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.150 0.850 48 H 0.152 0.848 49 H 0.152 0.848 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.687 4.209 -26.956 28.633 hybrid contribution 0.976 -0.457 0.351 1.133 sum -7.711 3.752 -26.605 27.953 Atomic orbital electron populations 1.22151 0.95553 1.01905 1.02217 1.20965 0.93491 0.97695 0.83911 0.89471 1.22062 0.98036 1.00751 0.96447 1.20626 0.90390 0.95573 0.90714 1.42360 1.05359 1.64940 1.25147 1.19183 0.83848 1.28567 1.05554 0.91314 1.24746 0.97729 1.00898 0.97655 1.69644 1.32871 1.40643 1.15083 0.86259 0.85093 0.77506 0.77279 1.21257 1.21658 1.21273 1.46149 1.66957 1.14212 1.09650 1.20562 0.77366 0.87191 0.84535 1.90684 1.50313 1.16065 1.85168 1.21348 1.01452 0.97147 0.93519 0.88229 1.21836 0.99197 0.96910 1.02387 1.21370 1.02283 0.97612 0.91835 1.20728 1.02407 0.96610 0.92336 1.19987 0.94100 0.97893 0.96690 1.20939 0.98394 0.97819 0.93486 1.21146 0.97944 0.97583 1.00419 1.17742 0.96359 0.91748 0.87179 1.91494 1.96759 1.67629 1.56263 1.21170 0.98648 1.01342 0.95813 1.20986 0.98255 0.94534 0.96742 0.92586 0.91617 0.92500 0.90322 0.91414 0.96417 0.96492 0.78327 0.93468 0.76444 0.91948 0.92118 0.91262 0.91098 0.90751 0.90479 0.90364 0.84993 0.84845 0.84769 0.84840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.48 37.16 0.35 -1.49 16 2 C 0.14 1.91 2.57 -67.93 -0.17 1.73 16 3 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 4 C -0.13 -2.04 4.87 -26.73 -0.13 -2.17 16 5 C 0.15 3.05 6.15 -4.04 -0.02 3.02 16 6 N -0.73 -18.45 5.60 -59.90 -0.34 -18.79 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 10 N -0.93 -28.08 13.06 55.49 0.72 -27.35 16 11 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 N -0.72 -8.50 4.42 -53.80 -0.24 -8.74 16 16 C 0.52 6.41 7.12 -10.99 -0.08 6.33 16 17 O -0.54 -8.78 15.58 5.56 0.09 -8.69 16 18 C -0.11 -0.98 2.73 -91.77 -0.25 -1.23 16 19 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 20 C -0.15 -0.96 8.84 37.16 0.33 -0.63 16 21 C -0.09 -0.80 4.01 -26.73 -0.11 -0.90 16 22 C -0.08 -0.53 5.10 -27.88 -0.14 -0.67 16 23 C -0.09 -0.64 5.13 -104.62 -0.54 -1.18 16 24 C -0.09 -0.63 9.70 -39.59 -0.38 -1.01 16 25 C -0.15 -1.17 10.03 -39.51 -0.40 -1.57 16 26 C 0.09 0.79 7.30 -39.42 -0.29 0.51 16 27 F -0.14 -1.41 17.27 2.25 0.04 -1.37 16 28 C -0.15 -1.22 10.03 -39.52 -0.40 -1.62 16 29 C -0.09 -0.66 9.70 -39.59 -0.38 -1.05 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.02 0.35 7.75 -51.93 -0.40 -0.05 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.38 10.06 7.67 -40.82 -0.31 9.74 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 39 H 0.40 4.11 8.02 -40.82 -0.33 3.78 16 40 H 0.06 0.39 7.56 -51.93 -0.39 0.00 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.35 6.56 -51.93 -0.34 0.01 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.77 7.95 -51.93 -0.41 0.36 16 45 H 0.08 0.45 8.08 -51.93 -0.42 0.03 16 46 H 0.08 0.40 6.51 -51.93 -0.34 0.06 16 47 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 48 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 49 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 50 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 414.39 15.07 6.24 6.24 Total: -1.00 -33.27 414.39 -9.74 -43.01 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -8.38 Total: 7.69 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -2.86 Total: -9.33 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: 0.15 Total: -54.88 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.09 Total: -8.69 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.27 -9.74 -43.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699107483.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.129 kcal (2) G-P(sol) polarization free energy of solvation -33.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds