Wall clock time and date at job start Tue Mar 31 2020 20:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 N 1.46499 * 109.47194 * 180.02562 * 5 4 2 7 7 C 1.36941 * 119.99832 * 180.02562 * 6 5 4 8 8 H 1.07998 * 120.00210 * 359.97438 * 7 6 5 9 9 C 1.38814 * 119.99738 * 179.97438 * 7 6 5 10 10 N 1.31611 * 120.00170 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99493 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47263 * 60.00099 * 11 9 7 13 13 H 1.48504 * 109.46714 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47358 * 299.99836 * 11 9 7 15 15 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 16 16 C 1.34769 * 119.99686 * 84.99974 * 15 2 1 17 17 O 1.21275 * 120.00678 * 0.02562 * 16 15 2 18 18 C 1.50701 * 119.99690 * 179.97438 * 16 15 2 19 19 H 1.08996 * 109.47353 * 300.00507 * 18 16 15 20 20 C 1.53006 * 109.46955 * 60.00305 * 18 16 15 21 21 C 1.52999 * 109.47228 * 179.97438 * 18 16 15 22 22 C 1.53004 * 109.47295 * 175.00187 * 21 18 16 23 23 C 1.50694 * 109.47251 * 180.02562 * 22 21 18 24 24 C 1.38247 * 119.97466 * 269.72981 * 23 22 21 25 25 C 1.38200 * 120.02673 * 179.72726 * 24 23 22 26 26 C 1.38463 * 119.97264 * 0.56441 * 25 24 23 27 27 F 1.35093 * 120.02592 * 179.68330 * 26 25 24 28 28 C 1.38454 * 119.94722 * 359.70590 * 26 25 24 29 29 C 1.38197 * 119.97713 * 0.02562 * 28 26 25 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 32 32 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 33 33 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 34 34 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 35 35 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 36 36 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 37 37 H 0.96997 * 120.00325 * 359.97438 * 6 5 4 38 38 H 0.97001 * 120.00048 * 180.02562 * 10 9 7 39 39 H 0.97000 * 119.99634 * 265.00306 * 15 2 1 40 40 H 1.09000 * 109.46977 * 299.99426 * 20 18 16 41 41 H 1.08996 * 109.47443 * 59.99845 * 20 18 16 42 42 H 1.09004 * 109.47114 * 179.97438 * 20 18 16 43 43 H 1.09000 * 109.47594 * 295.00396 * 21 18 16 44 44 H 1.09002 * 109.47031 * 55.00645 * 21 18 16 45 45 H 1.09000 * 109.46804 * 300.00063 * 22 21 18 46 46 H 1.09000 * 109.47056 * 59.99866 * 22 21 18 47 47 H 1.08004 * 119.98248 * 359.96951 * 24 23 22 48 48 H 1.07994 * 120.01123 * 180.24538 * 25 24 23 49 49 H 1.08005 * 120.01064 * 179.97438 * 28 26 25 50 50 H 1.08002 * 119.98703 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 7 4.0531 -1.3044 2.5097 7 6 5.3951 -1.3404 2.7796 8 1 6.0936 -0.8597 2.1107 9 6 5.8578 -1.9948 3.9131 10 7 5.0066 -2.5802 4.7285 11 14 7.6886 -2.0445 4.2809 12 1 8.2008 -0.6590 4.4324 13 1 7.9202 -2.7978 5.5395 14 1 8.3999 -2.7159 3.1636 15 7 2.0184 -0.6906 -1.1962 16 6 2.1472 -0.0183 -2.3570 17 8 1.8592 1.1585 -2.4115 18 6 2.6501 -0.7285 -3.5873 19 1 3.6494 -1.1204 -3.3977 20 6 1.7065 -1.8828 -3.9314 21 6 2.7009 0.2543 -4.7588 22 6 3.3277 -0.4323 -5.9739 23 6 3.3782 0.5359 -7.1275 24 6 2.3192 0.6113 -8.0130 25 6 2.3620 1.5029 -9.0680 26 6 3.4712 2.3127 -9.2448 27 9 3.5169 3.1801 -10.2795 28 6 4.5336 2.2323 -8.3607 29 6 4.4862 1.3439 -7.3031 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6053 -0.2617 2.1370 34 1 1.7516 -1.7715 1.2056 35 1 3.9994 -1.0728 0.4261 36 1 3.8531 0.4370 1.3574 37 1 3.4258 -1.7358 3.1107 38 1 5.3298 -3.0372 5.5207 39 1 2.2491 -1.6318 -1.1525 40 1 1.6700 -2.5832 -3.0970 41 1 0.7072 -1.4911 -4.1210 42 1 2.0701 -2.3963 -4.8215 43 1 1.6898 0.5779 -5.0057 44 1 3.3018 1.1202 -4.4807 45 1 4.3388 -0.7559 -5.7270 46 1 2.7269 -1.2983 -6.2520 47 1 1.4564 -0.0241 -7.8778 48 1 1.5329 1.5644 -9.7573 49 1 5.3995 2.8631 -8.4978 50 1 5.3147 1.2814 -6.6131 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699107483.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:27 Heat of formation + Delta-G solvation = -97.846064 kcal Electronic energy + Delta-G solvation = -27857.660245 eV Core-core repulsion = 23797.450809 eV Total energy + Delta-G solvation = -4060.209436 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.90001 -41.10187 -40.10931 -38.00681 -36.49022 -36.02651 -33.72073 -33.02023 -32.06214 -31.70197 -29.41483 -28.81662 -26.18884 -25.83763 -24.03527 -23.98124 -23.08455 -22.06075 -21.60122 -20.72841 -19.19485 -18.64903 -18.04420 -17.39858 -17.30714 -16.71512 -16.60268 -16.37728 -16.33096 -15.57881 -15.40305 -15.31818 -15.06061 -14.95605 -14.68356 -14.50693 -14.39284 -14.21785 -14.07184 -13.66041 -13.50353 -13.23914 -13.09894 -12.87848 -12.85827 -12.56674 -12.46014 -12.36807 -12.34991 -12.29825 -11.99630 -11.96180 -11.91377 -11.72424 -11.61397 -11.48893 -10.94161 -10.64270 -10.04803 -10.01161 -9.48103 -9.00862 -7.95843 -5.24906 0.16519 0.29626 1.47454 1.50244 1.56490 1.74369 2.28726 2.55532 2.63676 3.31807 3.37517 3.62294 3.69771 3.78521 3.82286 3.97631 4.02936 4.09352 4.17637 4.18772 4.32076 4.37289 4.38868 4.54670 4.56994 4.58902 4.65846 4.67679 4.77516 4.82136 4.87782 4.96295 5.00505 5.04799 5.06771 5.11439 5.16448 5.18699 5.23977 5.27383 5.30170 5.34114 5.40556 5.47420 5.48211 5.63692 5.65646 5.96711 6.26390 6.65217 7.33027 7.34961 8.08372 8.32388 9.27046 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013690 B = 0.001861 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.753401 B =15043.950905 C =16356.595288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.151 3.849 3 H 0.064 0.936 4 C -0.118 4.118 5 C 0.155 3.845 6 N -0.745 5.745 7 C -0.250 4.250 8 H 0.072 0.928 9 C -0.073 4.073 10 N -0.966 5.966 11 Si 0.973 3.027 12 H -0.281 1.281 13 H -0.294 1.294 14 H -0.275 1.275 15 N -0.714 5.714 16 C 0.512 3.488 17 O -0.588 6.588 18 C -0.106 4.106 19 H 0.113 0.887 20 C -0.142 4.142 21 C -0.087 4.087 22 C -0.075 4.075 23 C -0.093 4.093 24 C -0.091 4.091 25 C -0.158 4.158 26 C 0.065 3.935 27 F -0.154 7.154 28 C -0.160 4.160 29 C -0.096 4.096 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.026 0.974 36 H 0.004 0.996 37 H 0.375 0.625 38 H 0.252 0.748 39 H 0.411 0.589 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.092 0.908 43 H 0.059 0.941 44 H 0.049 0.951 45 H 0.087 0.913 46 H 0.099 0.901 47 H 0.154 0.846 48 H 0.147 0.853 49 H 0.143 0.857 50 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.670 1.842 -27.848 29.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.045 3.955 3 H 0.082 0.918 4 C -0.156 4.156 5 C 0.028 3.972 6 N -0.388 5.388 7 C -0.381 4.381 8 H 0.090 0.910 9 C -0.266 4.266 10 N -0.617 5.617 11 Si 0.802 3.198 12 H -0.207 1.207 13 H -0.220 1.220 14 H -0.201 1.201 15 N -0.365 5.365 16 C 0.300 3.700 17 O -0.468 6.468 18 C -0.128 4.128 19 H 0.131 0.869 20 C -0.199 4.199 21 C -0.125 4.125 22 C -0.112 4.112 23 C -0.093 4.093 24 C -0.108 4.108 25 C -0.176 4.176 26 C 0.046 3.954 27 F -0.132 7.132 28 C -0.179 4.179 29 C -0.114 4.114 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.044 0.956 36 H 0.022 0.978 37 H 0.207 0.793 38 H 0.061 0.939 39 H 0.248 0.752 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.111 0.889 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.105 0.895 46 H 0.117 0.883 47 H 0.172 0.828 48 H 0.165 0.835 49 H 0.161 0.839 50 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -8.700 2.745 -27.943 29.395 hybrid contribution 0.956 0.052 0.629 1.146 sum -7.744 2.797 -27.314 28.528 Atomic orbital electron populations 1.22062 0.93773 1.02916 1.02207 1.20770 0.94749 0.96256 0.83682 0.91809 1.21890 0.94602 1.01749 0.97400 1.20753 0.93483 0.94029 0.88913 1.42555 1.04473 1.65259 1.26536 1.19563 0.85299 1.27796 1.05473 0.91048 1.25562 1.02029 1.01209 0.97801 1.69794 1.34642 1.41762 1.15477 0.85226 0.80105 0.77521 0.76992 1.20720 1.21973 1.20135 1.46119 1.66611 1.14633 1.09167 1.21294 0.76446 0.86799 0.85479 1.90668 1.52210 1.18055 1.85855 1.21380 1.02472 0.97445 0.91455 0.86876 1.21851 0.98400 0.96015 1.03676 1.21276 1.01371 0.97052 0.92803 1.20697 1.03189 0.96614 0.90697 1.20213 0.94075 0.97956 0.97049 1.21234 0.98970 0.97718 0.92926 1.21390 0.97967 0.97333 1.00935 1.18042 0.97404 0.92468 0.87521 1.91460 1.96882 1.68104 1.56793 1.21356 0.98898 1.01728 0.95931 1.21218 0.98969 0.94469 0.96787 0.91008 0.90920 0.93243 0.90477 0.90200 0.95619 0.97825 0.79260 0.93923 0.75243 0.91357 0.92558 0.88924 0.92199 0.93193 0.89470 0.88282 0.82793 0.83476 0.83948 0.83692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.48 71.98 0.68 -2.57 16 2 C 0.15 3.86 2.57 44.99 0.12 3.98 16 3 H 0.06 1.96 7.58 -2.39 -0.02 1.94 16 4 C -0.12 -3.45 4.87 30.59 0.15 -3.30 16 5 C 0.15 6.01 6.15 86.38 0.53 6.54 16 6 N -0.75 -37.33 5.60 -343.44 -1.92 -39.25 16 7 C -0.25 -13.91 9.99 84.03 0.84 -13.07 16 8 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 9 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 10 N -0.97 -58.29 13.06 21.65 0.28 -58.00 16 11 Si 0.97 45.65 29.55 68.60 2.03 47.67 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 14 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 15 N -0.71 -15.92 4.42 -442.54 -1.96 -17.88 16 16 C 0.51 12.25 7.12 87.66 0.62 12.87 16 17 O -0.59 -19.11 15.58 -3.01 -0.05 -19.16 16 18 C -0.11 -1.63 2.73 -11.54 -0.03 -1.66 16 19 H 0.11 1.46 8.14 -2.39 -0.02 1.45 16 20 C -0.14 -1.44 8.84 71.98 0.64 -0.80 16 21 C -0.09 -1.38 4.01 30.60 0.12 -1.25 16 22 C -0.07 -0.77 5.10 29.85 0.15 -0.62 16 23 C -0.09 -1.24 5.13 -19.86 -0.10 -1.34 16 24 C -0.09 -1.14 9.70 22.26 0.22 -0.92 16 25 C -0.16 -2.31 10.03 22.31 0.22 -2.08 16 26 C 0.06 1.16 7.30 22.37 0.16 1.32 16 27 F -0.15 -3.10 17.27 44.97 0.78 -2.32 16 28 C -0.16 -2.58 10.03 22.31 0.22 -2.36 16 29 C -0.10 -1.40 9.70 22.26 0.22 -1.18 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 2.29 8.14 -2.39 -0.02 2.28 16 34 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.03 0.97 7.75 -2.39 -0.02 0.95 16 36 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.38 19.74 7.67 -92.71 -0.71 19.03 16 38 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 39 H 0.41 7.52 8.02 -92.71 -0.74 6.77 16 40 H 0.07 0.63 7.56 -2.39 -0.02 0.62 16 41 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.09 0.54 6.56 -2.38 -0.02 0.52 16 43 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.05 1.03 7.95 -2.39 -0.02 1.01 16 45 H 0.09 0.76 8.08 -2.39 -0.02 0.74 16 46 H 0.10 0.63 6.51 -2.39 -0.02 0.62 16 47 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 48 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 49 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 50 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -72.02 414.39 3.87 -68.15 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: -0.52 Total: 30.96 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: 5.23 Total: -10.16 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -3.60 Total: -115.14 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.05 Total: -19.16 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.78 Total: -2.32 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -72.02 3.87 -68.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699107483.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.698 kcal (2) G-P(sol) polarization free energy of solvation -72.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds