Wall clock time and date at job start Tue Mar 31 2020 20:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.46744 * 2 1 4 4 C 1.52998 * 109.47480 * 119.99910 * 2 1 3 5 5 N 1.46501 * 109.47279 * 175.00009 * 4 2 1 6 6 C 1.46495 * 119.99787 * 270.00066 * 5 4 2 7 7 C 1.36935 * 119.99871 * 90.00046 * 5 4 2 8 8 H 1.08003 * 120.00122 * 23.61938 * 7 5 4 9 9 C 1.38806 * 120.00092 * 203.61201 * 7 5 4 10 10 N 1.31625 * 119.99932 * 11.32215 * 9 7 5 11 11 Si 1.86801 * 120.00336 * 191.32070 * 9 7 5 12 12 H 1.48500 * 109.46806 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47069 * 119.99752 * 11 9 7 14 14 H 1.48495 * 109.47298 * 240.00554 * 11 9 7 15 15 N 1.46503 * 109.47199 * 240.00392 * 2 1 3 16 16 C 1.34768 * 120.00151 * 84.99708 * 15 2 1 17 17 O 1.21277 * 120.00457 * 359.97438 * 16 15 2 18 18 C 1.50704 * 119.99937 * 180.02562 * 16 15 2 19 19 H 1.09004 * 109.46814 * 299.99358 * 18 16 15 20 20 C 1.52995 * 109.47438 * 59.99473 * 18 16 15 21 21 C 1.53001 * 109.47200 * 179.97438 * 18 16 15 22 22 C 1.53000 * 109.47365 * 174.99265 * 21 18 16 23 23 C 1.50699 * 109.47304 * 179.97438 * 22 21 18 24 24 C 1.38217 * 120.01296 * 100.00321 * 23 22 21 25 25 C 1.38218 * 120.03087 * 179.97438 * 24 23 22 26 26 C 1.38273 * 120.04642 * 0.02562 * 25 24 23 27 27 C 1.38176 * 120.02699 * 0.02562 * 26 25 24 28 28 C 1.38441 * 120.01267 * 279.72874 * 23 22 21 29 29 F 1.35097 * 120.02603 * 359.97438 * 28 23 22 30 30 H 1.09000 * 109.47496 * 299.99795 * 1 2 3 31 31 H 1.08995 * 109.47493 * 60.00082 * 1 2 3 32 32 H 1.09007 * 109.47218 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46914 * 295.00592 * 4 2 1 34 34 H 1.09006 * 109.46944 * 55.00002 * 4 2 1 35 35 H 1.09004 * 109.47259 * 94.53654 * 6 5 4 36 36 H 1.09000 * 109.47280 * 214.52992 * 6 5 4 37 37 H 1.09004 * 109.47420 * 334.53112 * 6 5 4 38 38 H 0.96999 * 119.99610 * 179.97438 * 10 9 7 39 39 H 0.96996 * 119.99629 * 265.00141 * 15 2 1 40 40 H 1.08995 * 109.47097 * 180.02562 * 20 18 16 41 41 H 1.08996 * 109.47269 * 300.00474 * 20 18 16 42 42 H 1.09007 * 109.46705 * 60.00681 * 20 18 16 43 43 H 1.08998 * 109.46881 * 294.99861 * 21 18 16 44 44 H 1.09002 * 109.47226 * 54.99308 * 21 18 16 45 45 H 1.09001 * 109.47155 * 300.00399 * 22 21 18 46 46 H 1.09006 * 109.46565 * 60.00221 * 22 21 18 47 47 H 1.08002 * 119.98344 * 359.95310 * 24 23 22 48 48 H 1.07997 * 119.98116 * 180.02562 * 25 24 23 49 49 H 1.07997 * 119.98760 * 179.97438 * 26 25 24 50 50 H 1.07996 * 120.01236 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1258 -1.9918 0.5611 7 6 4.2799 0.1649 1.7239 8 1 3.8834 0.8071 2.4965 9 6 5.5799 0.3443 1.2718 10 7 5.9918 -0.2793 0.1883 11 14 6.7450 1.4707 2.2009 12 1 6.0438 2.0473 3.3762 13 1 7.9236 0.6933 2.6607 14 1 7.1936 2.5667 1.3050 15 7 2.0183 -0.6905 -1.1962 16 6 2.1470 -0.0182 -2.3571 17 8 1.8581 1.1584 -2.4117 18 6 2.6488 -0.7287 -3.5878 19 1 3.6480 -1.1211 -3.3986 20 6 1.7044 -1.8823 -3.9314 21 6 2.6998 0.2543 -4.7591 22 6 3.3256 -0.4326 -5.9746 23 6 3.3752 0.5354 -7.1285 24 6 4.5535 1.1922 -7.4298 25 6 4.5995 2.0797 -8.4883 26 6 3.4669 2.3120 -9.2468 27 6 2.2876 1.6574 -8.9468 28 6 2.2421 0.7629 -7.8907 29 9 1.0915 0.1170 -7.6008 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.7516 -0.1583 2.1369 34 1 1.6054 -1.7198 1.2951 35 1 4.3532 -1.7641 -0.4803 36 1 5.0472 -2.2387 1.0885 37 1 3.4426 -2.8400 0.6068 38 1 6.9002 -0.1536 -0.1278 39 1 2.2490 -1.6317 -1.1527 40 1 2.0677 -2.3964 -4.8212 41 1 1.6677 -2.5827 -3.0971 42 1 0.7053 -1.4898 -4.1206 43 1 1.6887 0.5785 -5.0055 44 1 3.3013 1.1198 -4.4812 45 1 4.3367 -0.7569 -5.7281 46 1 2.7240 -1.2981 -6.2525 47 1 5.4385 1.0120 -6.8375 48 1 5.5207 2.5921 -8.7233 49 1 3.5039 3.0060 -10.0734 50 1 1.4031 1.8394 -9.5391 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699464748.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:04 Heat of formation + Delta-G solvation = -74.048846 kcal Electronic energy + Delta-G solvation = -29666.604513 eV Core-core repulsion = 25607.427002 eV Total energy + Delta-G solvation = -4059.177511 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.87589 -40.99445 -39.99426 -38.17882 -36.63462 -35.70649 -33.62240 -32.88042 -31.61946 -31.37022 -29.11229 -27.96153 -27.39945 -26.28678 -24.26534 -23.70400 -23.19590 -22.05535 -21.52406 -20.68127 -18.77054 -18.56109 -18.00725 -17.43648 -17.19634 -16.81598 -16.56879 -16.47915 -16.33075 -15.64786 -15.46837 -15.12361 -15.05082 -14.77249 -14.61897 -14.42000 -14.12830 -13.89135 -13.74202 -13.66808 -13.40951 -13.26301 -13.08990 -12.84822 -12.72334 -12.67773 -12.55483 -12.52047 -12.43553 -12.28690 -12.08386 -12.02257 -11.81499 -11.70189 -11.66418 -11.63742 -10.66976 -10.57879 -9.89392 -9.85602 -9.57522 -8.70245 -7.81313 -5.27329 0.20447 0.27063 1.42431 1.45075 1.53392 1.83124 2.42097 2.51733 2.66684 3.32623 3.33351 3.58121 3.71241 3.77983 3.81055 3.94845 4.03991 4.14799 4.19245 4.29486 4.40398 4.41546 4.46800 4.48912 4.55240 4.61393 4.68797 4.76485 4.85652 4.89523 4.91433 4.96034 4.98918 5.00261 5.02062 5.13216 5.21238 5.21724 5.31734 5.34613 5.38472 5.39494 5.45209 5.50363 5.66324 5.76895 5.82196 5.98023 6.36050 6.76300 7.19515 7.46315 7.91044 8.31773 9.20975 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012306 B = 0.002967 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.754456 B = 9434.258619 C =10827.122914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.122 3.878 3 H 0.032 0.968 4 C 0.143 3.857 5 N -0.611 5.611 6 C 0.174 3.826 7 C -0.260 4.260 8 H 0.064 0.936 9 C -0.048 4.048 10 N -0.927 5.927 11 Si 0.958 3.042 12 H -0.270 1.270 13 H -0.288 1.288 14 H -0.300 1.300 15 N -0.692 5.692 16 C 0.512 3.488 17 O -0.601 6.601 18 C -0.104 4.104 19 H 0.100 0.900 20 C -0.134 4.134 21 C -0.080 4.080 22 C -0.075 4.075 23 C -0.127 4.127 24 C -0.103 4.103 25 C -0.129 4.129 26 C -0.097 4.097 27 C -0.160 4.160 28 C 0.073 3.927 29 F -0.149 7.149 30 H 0.074 0.926 31 H 0.036 0.964 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.014 0.986 36 H 0.011 0.989 37 H 0.036 0.964 38 H 0.244 0.756 39 H 0.403 0.597 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.041 0.959 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.140 0.860 48 H 0.153 0.847 49 H 0.161 0.839 50 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.488 -3.605 -17.343 19.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.014 3.986 3 H 0.050 0.950 4 C 0.016 3.984 5 N -0.334 5.334 6 C 0.029 3.971 7 C -0.390 4.390 8 H 0.082 0.918 9 C -0.244 4.244 10 N -0.573 5.573 11 Si 0.787 3.213 12 H -0.194 1.194 13 H -0.215 1.215 14 H -0.227 1.227 15 N -0.341 5.341 16 C 0.299 3.701 17 O -0.482 6.482 18 C -0.125 4.125 19 H 0.118 0.882 20 C -0.192 4.192 21 C -0.118 4.118 22 C -0.112 4.112 23 C -0.128 4.128 24 C -0.121 4.121 25 C -0.147 4.147 26 C -0.114 4.114 27 C -0.179 4.179 28 C 0.054 3.946 29 F -0.127 7.127 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.032 0.968 36 H 0.030 0.970 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.239 0.761 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.060 0.940 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.158 0.842 48 H 0.171 0.829 49 H 0.179 0.821 50 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.587 -2.842 -17.371 19.168 hybrid contribution 0.878 0.555 0.662 1.231 sum -6.709 -2.287 -16.709 18.151 Atomic orbital electron populations 1.22006 0.93886 1.02801 1.01652 1.21633 0.93908 0.96304 0.86778 0.94968 1.21357 0.83359 0.99196 0.94492 1.44088 1.00809 1.20501 1.68004 1.20644 0.94274 0.86021 0.96155 1.19469 0.95080 1.10627 1.13854 0.91840 1.25658 1.00395 1.00868 0.97438 1.70181 1.16862 1.47060 1.23240 0.85341 0.79346 0.78423 0.78176 1.19440 1.21491 1.22740 1.45768 1.65591 1.13934 1.08847 1.21116 0.76415 0.86721 0.85822 1.90602 1.53171 1.18240 1.86231 1.21288 1.01963 0.97555 0.91703 0.88221 1.21782 0.98077 0.95858 1.03445 1.21160 1.00573 0.97016 0.93029 1.20596 1.03034 0.96651 0.90876 1.20121 0.93447 1.01140 0.98066 1.21287 0.97110 0.95907 0.97749 1.21589 1.00084 0.97975 0.95044 1.21391 0.91235 0.98744 1.00064 1.21443 1.01215 0.97636 0.97617 1.17906 0.81944 0.96660 0.98102 1.91450 1.47907 1.80152 1.93229 0.90667 0.94509 0.90440 0.92060 0.90530 0.96765 0.97006 0.94547 0.94630 0.76074 0.89322 0.90902 0.92705 0.92986 0.93973 0.89265 0.89278 0.84192 0.82886 0.82118 0.83283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 9.48 71.98 0.68 -3.59 16 2 C 0.12 4.61 2.88 44.99 0.13 4.74 16 3 H 0.03 1.55 7.58 -2.39 -0.02 1.54 16 4 C 0.14 5.34 5.33 86.38 0.46 5.80 16 5 N -0.61 -28.99 2.78 -726.94 -2.02 -31.01 16 6 C 0.17 7.83 7.61 127.77 0.97 8.80 16 7 C -0.26 -14.16 9.66 84.03 0.81 -13.35 16 8 H 0.06 3.44 7.85 -2.91 -0.02 3.42 16 9 C -0.05 -2.69 5.13 84.86 0.44 -2.26 16 10 N -0.93 -53.71 10.66 21.65 0.23 -53.48 16 11 Si 0.96 45.97 29.57 68.60 2.03 48.00 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 13 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 14 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 15 N -0.69 -25.20 4.30 -442.55 -1.90 -27.11 16 16 C 0.51 20.14 7.12 87.66 0.62 20.77 16 17 O -0.60 -28.94 15.58 -3.02 -0.05 -28.99 16 18 C -0.10 -3.14 2.73 -11.54 -0.03 -3.17 16 19 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 20 C -0.13 -2.98 8.84 71.98 0.64 -2.34 16 21 C -0.08 -2.43 4.01 30.59 0.12 -2.31 16 22 C -0.07 -1.76 4.83 29.85 0.14 -1.61 16 23 C -0.13 -3.02 5.14 -19.82 -0.10 -3.12 16 24 C -0.10 -2.12 9.67 22.26 0.22 -1.90 16 25 C -0.13 -2.13 10.04 22.27 0.22 -1.91 16 26 C -0.10 -1.48 10.04 22.26 0.22 -1.26 16 27 C -0.16 -3.04 10.03 22.31 0.22 -2.82 16 28 C 0.07 1.75 7.24 22.38 0.16 1.91 16 29 F -0.15 -3.90 16.66 44.97 0.75 -3.15 16 30 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.04 1.19 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.86 8.14 -2.38 -0.02 1.85 16 33 H 0.06 2.25 8.03 -2.39 -0.02 2.23 16 34 H 0.08 2.35 7.86 -2.38 -0.02 2.33 16 35 H 0.01 0.69 6.90 -2.38 -0.02 0.67 16 36 H 0.01 0.57 7.30 -2.39 -0.02 0.55 16 37 H 0.04 1.31 7.84 -2.38 -0.02 1.29 16 38 H 0.24 13.92 8.31 -92.71 -0.77 13.15 16 39 H 0.40 12.97 6.59 -92.71 -0.61 12.36 16 40 H 0.09 1.57 6.56 -2.39 -0.02 1.56 16 41 H 0.07 1.43 7.56 -2.39 -0.02 1.41 16 42 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 43 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.04 1.52 7.96 -2.39 -0.02 1.50 16 45 H 0.09 1.91 8.01 -2.39 -0.02 1.89 16 46 H 0.09 1.87 6.36 -2.38 -0.02 1.86 16 47 H 0.14 2.58 8.04 -2.91 -0.02 2.56 16 48 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 49 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 50 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -72.80 406.43 5.28 -67.51 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.31 Total: 25.84 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 5.93 Total: 2.38 kcal Atomic # 7 Polarization: -107.90 SS G_CDS: -3.69 Total: -111.60 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -0.05 Total: -28.99 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.75 Total: -3.15 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -72.80 5.28 -67.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699464748.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.535 kcal (2) G-P(sol) polarization free energy of solvation -72.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds