Wall clock time and date at job start Tue Mar 31 2020 20:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46868 * 2 1 4 4 C 1.53005 * 109.46865 * 240.00295 * 2 1 3 5 5 N 1.46501 * 109.46802 * 185.00109 * 4 2 1 6 6 C 1.46510 * 119.99467 * 269.99404 * 5 4 2 7 7 C 1.36928 * 120.00753 * 89.99733 * 5 4 2 8 8 H 1.08003 * 119.99822 * 22.02337 * 7 5 4 9 9 C 1.38813 * 120.00660 * 202.02906 * 7 5 4 10 10 N 1.31617 * 119.99703 * 11.43749 * 9 7 5 11 11 Si 1.86800 * 120.00009 * 191.44379 * 9 7 5 12 12 H 1.48493 * 109.47504 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47091 * 119.99898 * 11 9 7 14 14 H 1.48505 * 109.46649 * 239.99572 * 11 9 7 15 15 N 1.46500 * 109.47347 * 120.00028 * 2 1 3 16 16 C 1.34782 * 120.00042 * 274.99816 * 15 2 1 17 17 O 1.21281 * 119.99531 * 359.97438 * 16 15 2 18 18 C 1.50695 * 119.99881 * 180.02562 * 16 15 2 19 19 H 1.08998 * 109.47179 * 60.00127 * 18 16 15 20 20 C 1.52999 * 109.46888 * 299.99839 * 18 16 15 21 21 C 1.53002 * 109.46640 * 180.02562 * 18 16 15 22 22 C 1.52999 * 109.46654 * 184.99732 * 21 18 16 23 23 C 1.50704 * 109.47193 * 179.97438 * 22 21 18 24 24 C 1.38224 * 120.00895 * 99.99811 * 23 22 21 25 25 C 1.38231 * 120.02201 * 180.02562 * 24 23 22 26 26 C 1.38266 * 120.05132 * 359.97438 * 25 24 23 27 27 C 1.38170 * 120.02475 * 0.02562 * 26 25 24 28 28 C 1.38433 * 120.01399 * 280.00365 * 23 22 21 29 29 F 1.35092 * 120.02625 * 0.02562 * 28 23 22 30 30 H 1.09003 * 109.46703 * 299.99813 * 1 2 3 31 31 H 1.08996 * 109.47370 * 59.99659 * 1 2 3 32 32 H 1.08999 * 109.46757 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46662 * 304.99456 * 4 2 1 34 34 H 1.08998 * 109.47191 * 64.99978 * 4 2 1 35 35 H 1.09000 * 109.46953 * 94.04871 * 6 5 4 36 36 H 1.09004 * 109.46821 * 214.04191 * 6 5 4 37 37 H 1.08993 * 109.47180 * 334.04803 * 6 5 4 38 38 H 0.96998 * 120.00039 * 180.02562 * 10 9 7 39 39 H 0.97001 * 119.99691 * 95.00428 * 15 2 1 40 40 H 1.08998 * 109.47445 * 300.00124 * 20 18 16 41 41 H 1.09000 * 109.47051 * 60.00770 * 20 18 16 42 42 H 1.08998 * 109.46699 * 180.02562 * 20 18 16 43 43 H 1.09000 * 109.47376 * 65.00495 * 21 18 16 44 44 H 1.08997 * 109.47217 * 304.99687 * 21 18 16 45 45 H 1.08998 * 109.47316 * 60.00093 * 22 21 18 46 46 H 1.09001 * 109.47707 * 300.00145 * 22 21 18 47 47 H 1.07993 * 119.98994 * 0.02562 * 24 23 22 48 48 H 1.07995 * 119.97181 * 180.02562 * 25 24 23 49 49 H 1.08001 * 119.98435 * 180.02562 * 26 25 24 50 50 H 1.08004 * 120.00801 * 179.74624 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.3343 0.2342 -1.7615 7 6 4.0850 -1.9157 -0.6024 8 1 3.5322 -2.8383 -0.5042 9 6 5.3886 -1.8344 -0.1323 10 7 5.9843 -0.6641 -0.0435 11 14 6.2973 -3.3859 0.3743 12 1 5.4130 -4.5630 0.1808 13 1 7.5166 -3.5398 -0.4592 14 1 6.6845 -3.2879 1.8046 15 7 2.0184 -0.6906 1.1961 16 6 2.1472 -0.0182 2.3572 17 8 1.8592 1.1586 2.4114 18 6 2.6501 -0.7285 3.5874 19 1 3.6494 -1.1203 3.3978 20 6 1.7065 -1.8827 3.9314 21 6 2.7009 0.2545 4.7588 22 6 3.3276 -0.4322 5.9739 23 6 3.3783 0.5362 7.1275 24 6 2.4217 0.4755 8.1235 25 6 2.4676 1.3639 9.1815 26 6 3.4704 2.3137 9.2451 27 6 4.4277 2.3761 8.2507 28 6 4.3827 1.4867 7.1901 29 9 5.3177 1.5473 6.2169 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -1.7197 -1.2952 34 1 1.7516 -0.1583 -2.1370 35 1 4.5995 0.9474 -0.9811 36 1 5.2419 -0.2024 -2.1785 37 1 3.7821 0.7463 -2.5493 38 1 6.8953 -0.6073 0.2847 39 1 2.2492 -1.6318 1.1525 40 1 0.7072 -1.4910 4.1210 41 1 1.6700 -2.5831 3.0970 42 1 2.0701 -2.3962 4.8215 43 1 1.6897 0.5780 5.0057 44 1 3.3017 1.1204 4.4807 45 1 4.3388 -0.7558 5.7270 46 1 2.7268 -1.2981 6.2520 47 1 1.6383 -0.2662 8.0750 48 1 1.7201 1.3156 9.9594 49 1 3.5055 3.0070 10.0725 50 1 5.2085 3.1208 8.2985 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699464751.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:21 Heat of formation + Delta-G solvation = -57.090697 kcal Electronic energy + Delta-G solvation = -29916.907360 eV Core-core repulsion = 25858.465210 eV Total energy + Delta-G solvation = -4058.442151 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.84013 -39.51208 -39.04408 -36.51145 -35.31129 -33.89443 -32.46679 -31.16418 -30.65571 -29.87885 -28.07637 -26.14547 -25.58821 -25.14885 -23.01201 -22.78003 -21.64875 -20.90851 -19.83633 -19.19726 -17.64535 -16.88536 -16.54291 -16.39267 -15.84732 -15.53666 -15.41830 -14.92043 -14.82199 -14.36576 -14.10174 -13.74418 -13.65421 -13.31432 -13.27395 -13.05315 -12.82485 -12.79034 -12.59108 -12.30001 -12.13623 -11.93750 -11.84718 -11.48857 -11.38475 -11.29469 -11.21399 -11.11899 -10.86213 -10.70595 -10.58022 -10.44163 -10.35474 -10.20984 -10.01720 -9.82306 -9.11314 -8.96575 -8.69970 -8.57156 -8.15524 -6.77176 -5.73306 -3.19335 1.03787 1.06411 3.32820 3.40482 3.42724 3.43354 3.44590 3.99446 4.21105 4.45913 4.53352 4.62064 4.77677 5.00714 5.14345 5.15059 5.20744 5.26472 5.36234 5.44718 5.52713 5.57634 5.63575 5.68684 5.80481 5.84781 5.92873 5.94591 5.99843 6.02082 6.05271 6.05539 6.16736 6.20307 6.23154 6.26422 6.29789 6.48163 6.52752 6.55204 6.58388 6.77447 6.78478 6.93812 7.39108 7.41374 7.71112 7.81285 8.36518 8.42602 9.07666 9.21005 9.85157 10.35425 11.30877 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011929 B = 0.003309 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.629400 B = 8458.650782 C = 9532.073155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.118 3.882 3 H 0.074 0.926 4 C 0.142 3.858 5 N -0.599 5.599 6 C 0.164 3.836 7 C -0.256 4.256 8 H 0.066 0.934 9 C 0.007 3.993 10 N -0.898 5.898 11 Si 0.895 3.105 12 H -0.278 1.278 13 H -0.290 1.290 14 H -0.290 1.290 15 N -0.687 5.687 16 C 0.523 3.477 17 O -0.564 6.564 18 C -0.112 4.112 19 H 0.100 0.900 20 C -0.142 4.142 21 C -0.088 4.088 22 C -0.085 4.085 23 C -0.108 4.108 24 C -0.091 4.091 25 C -0.132 4.132 26 C -0.100 4.100 27 C -0.155 4.155 28 C 0.103 3.897 29 F -0.132 7.132 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.051 0.949 35 H 0.027 0.973 36 H 0.045 0.955 37 H -0.005 1.005 38 H 0.252 0.748 39 H 0.403 0.597 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.131 0.869 48 H 0.127 0.873 49 H 0.129 0.871 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.767 0.634 15.109 17.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.010 3.990 3 H 0.093 0.907 4 C 0.014 3.986 5 N -0.321 5.321 6 C 0.020 3.980 7 C -0.385 4.385 8 H 0.084 0.916 9 C -0.192 4.192 10 N -0.543 5.543 11 Si 0.725 3.275 12 H -0.203 1.203 13 H -0.217 1.217 14 H -0.217 1.217 15 N -0.336 5.336 16 C 0.309 3.691 17 O -0.444 6.444 18 C -0.133 4.133 19 H 0.118 0.882 20 C -0.200 4.200 21 C -0.126 4.126 22 C -0.122 4.122 23 C -0.108 4.108 24 C -0.109 4.109 25 C -0.150 4.150 26 C -0.119 4.119 27 C -0.173 4.173 28 C 0.083 3.917 29 F -0.111 7.111 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.045 0.955 36 H 0.064 0.936 37 H 0.014 0.986 38 H 0.062 0.938 39 H 0.238 0.762 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.149 0.851 48 H 0.145 0.855 49 H 0.147 0.853 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.733 1.498 15.095 17.504 hybrid contribution 1.083 -1.094 0.168 1.548 sum -7.650 0.405 15.263 17.078 Atomic orbital electron populations 1.22148 0.97094 1.01095 1.01402 1.21779 0.91640 0.98369 0.87241 0.90734 1.21180 0.85970 0.97809 0.93668 1.43893 0.98902 1.22641 1.66642 1.20794 0.92978 0.90471 0.93801 1.19101 0.96958 0.89474 1.32995 0.91597 1.24990 0.98620 0.96101 0.99511 1.70083 1.13111 1.21546 1.49518 0.86340 0.80143 0.82997 0.78010 1.20332 1.21669 1.21689 1.45704 1.65107 1.14266 1.08519 1.20297 0.77139 0.86959 0.84730 1.90608 1.51880 1.16230 1.85675 1.21265 1.01647 0.96739 0.93646 0.88151 1.21800 0.98915 0.97212 1.02024 1.21288 1.01575 0.97935 0.91833 1.20697 1.02714 0.96467 0.92296 1.20049 0.95086 0.97626 0.98083 1.20975 0.97671 0.99101 0.93142 1.21179 0.99042 0.96015 0.98777 1.20965 0.94174 0.98528 0.98183 1.21170 1.01488 1.00093 0.94591 1.17653 0.88831 0.97619 0.87573 1.91542 1.63088 1.95606 1.60851 0.93053 0.92429 0.93116 0.93442 0.93120 0.95452 0.93643 0.98643 0.93793 0.76167 0.92492 0.91998 0.91796 0.91461 0.90931 0.90387 0.90197 0.85103 0.85534 0.85306 0.84884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.48 37.16 0.35 -2.10 16 2 C 0.12 2.25 2.88 -67.93 -0.20 2.05 16 3 H 0.07 1.66 7.58 -51.92 -0.39 1.27 16 4 C 0.14 2.77 5.36 -4.04 -0.02 2.75 16 5 N -0.60 -14.34 2.82 -181.11 -0.51 -14.85 16 6 C 0.16 4.06 9.01 59.85 0.54 4.60 16 7 C -0.26 -6.48 8.02 -15.06 -0.12 -6.60 16 8 H 0.07 1.61 7.84 -52.48 -0.41 1.20 16 9 C 0.01 0.18 5.13 -17.43 -0.09 0.09 16 10 N -0.90 -25.55 10.57 55.49 0.59 -24.97 16 11 Si 0.89 20.88 29.57 -169.99 -5.03 15.86 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 15 N -0.69 -13.29 4.38 -53.80 -0.24 -13.53 16 16 C 0.52 10.43 7.12 -10.99 -0.08 10.35 16 17 O -0.56 -13.02 15.58 5.56 0.09 -12.94 16 18 C -0.11 -1.81 2.73 -91.77 -0.25 -2.06 16 19 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 20 C -0.14 -1.78 8.84 37.16 0.33 -1.45 16 21 C -0.09 -1.36 4.01 -26.73 -0.11 -1.47 16 22 C -0.08 -1.07 4.82 -27.88 -0.13 -1.20 16 23 C -0.11 -1.33 5.14 -104.55 -0.54 -1.87 16 24 C -0.09 -0.91 9.67 -39.59 -0.38 -1.29 16 25 C -0.13 -1.16 10.04 -39.57 -0.40 -1.56 16 26 C -0.10 -0.91 10.04 -39.60 -0.40 -1.30 16 27 C -0.15 -1.70 10.03 -39.52 -0.40 -2.10 16 28 C 0.10 1.38 7.24 -39.42 -0.29 1.10 16 29 F -0.13 -2.10 16.66 2.25 0.04 -2.07 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.87 8.03 -51.93 -0.42 0.45 16 34 H 0.05 0.91 7.86 -51.93 -0.41 0.50 16 35 H 0.03 0.75 7.44 -51.93 -0.39 0.36 16 36 H 0.04 1.20 7.16 -51.93 -0.37 0.83 16 37 H 0.00 -0.11 7.85 -51.93 -0.41 -0.52 16 38 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.40 7.63 6.82 -40.82 -0.28 7.35 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.76 7.56 -51.93 -0.39 0.37 16 42 H 0.06 0.67 6.56 -51.93 -0.34 0.33 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.07 1.33 7.95 -51.93 -0.41 0.92 16 45 H 0.08 1.06 7.95 -51.93 -0.41 0.65 16 46 H 0.08 0.82 6.43 -51.93 -0.33 0.49 16 47 H 0.13 1.03 8.04 -52.49 -0.42 0.61 16 48 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 49 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 50 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 LS Contribution 406.88 15.07 6.13 6.13 Total: -1.00 -31.47 406.88 -9.43 -40.90 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -8.33 Total: 7.53 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -2.17 Total: -2.07 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: -0.16 Total: -53.35 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.09 Total: -12.94 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.47 -9.43 -40.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699464751.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.191 kcal (2) G-P(sol) polarization free energy of solvation -31.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds