Wall clock time and date at job start Tue Mar 31 2020 20:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46868 * 2 1 4 4 C 1.53005 * 109.46865 * 240.00295 * 2 1 3 5 5 N 1.46501 * 109.46802 * 185.00109 * 4 2 1 6 6 C 1.46510 * 119.99467 * 269.99404 * 5 4 2 7 7 C 1.36928 * 120.00753 * 89.99733 * 5 4 2 8 8 H 1.08003 * 119.99822 * 22.02337 * 7 5 4 9 9 C 1.38813 * 120.00660 * 202.02906 * 7 5 4 10 10 N 1.31617 * 119.99703 * 11.43749 * 9 7 5 11 11 Si 1.86800 * 120.00009 * 191.44379 * 9 7 5 12 12 H 1.48493 * 109.47504 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47091 * 119.99898 * 11 9 7 14 14 H 1.48505 * 109.46649 * 239.99572 * 11 9 7 15 15 N 1.46500 * 109.47347 * 120.00028 * 2 1 3 16 16 C 1.34782 * 120.00042 * 274.99816 * 15 2 1 17 17 O 1.21281 * 119.99531 * 359.97438 * 16 15 2 18 18 C 1.50695 * 119.99881 * 180.02562 * 16 15 2 19 19 H 1.08998 * 109.47179 * 60.00127 * 18 16 15 20 20 C 1.52999 * 109.46888 * 299.99839 * 18 16 15 21 21 C 1.53002 * 109.46640 * 180.02562 * 18 16 15 22 22 C 1.52999 * 109.46654 * 184.99732 * 21 18 16 23 23 C 1.50704 * 109.47193 * 179.97438 * 22 21 18 24 24 C 1.38224 * 120.00895 * 99.99811 * 23 22 21 25 25 C 1.38231 * 120.02201 * 180.02562 * 24 23 22 26 26 C 1.38266 * 120.05132 * 359.97438 * 25 24 23 27 27 C 1.38170 * 120.02475 * 0.02562 * 26 25 24 28 28 C 1.38433 * 120.01399 * 280.00365 * 23 22 21 29 29 F 1.35092 * 120.02625 * 0.02562 * 28 23 22 30 30 H 1.09003 * 109.46703 * 299.99813 * 1 2 3 31 31 H 1.08996 * 109.47370 * 59.99659 * 1 2 3 32 32 H 1.08999 * 109.46757 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46662 * 304.99456 * 4 2 1 34 34 H 1.08998 * 109.47191 * 64.99978 * 4 2 1 35 35 H 1.09000 * 109.46953 * 94.04871 * 6 5 4 36 36 H 1.09004 * 109.46821 * 214.04191 * 6 5 4 37 37 H 1.08993 * 109.47180 * 334.04803 * 6 5 4 38 38 H 0.96998 * 120.00039 * 180.02562 * 10 9 7 39 39 H 0.97001 * 119.99691 * 95.00428 * 15 2 1 40 40 H 1.08998 * 109.47445 * 300.00124 * 20 18 16 41 41 H 1.09000 * 109.47051 * 60.00770 * 20 18 16 42 42 H 1.08998 * 109.46699 * 180.02562 * 20 18 16 43 43 H 1.09000 * 109.47376 * 65.00495 * 21 18 16 44 44 H 1.08997 * 109.47217 * 304.99687 * 21 18 16 45 45 H 1.08998 * 109.47316 * 60.00093 * 22 21 18 46 46 H 1.09001 * 109.47707 * 300.00145 * 22 21 18 47 47 H 1.07993 * 119.98994 * 0.02562 * 24 23 22 48 48 H 1.07995 * 119.97181 * 180.02562 * 25 24 23 49 49 H 1.08001 * 119.98435 * 180.02562 * 26 25 24 50 50 H 1.08004 * 120.00801 * 179.74624 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.3343 0.2342 -1.7615 7 6 4.0850 -1.9157 -0.6024 8 1 3.5322 -2.8383 -0.5042 9 6 5.3886 -1.8344 -0.1323 10 7 5.9843 -0.6641 -0.0435 11 14 6.2973 -3.3859 0.3743 12 1 5.4130 -4.5630 0.1808 13 1 7.5166 -3.5398 -0.4592 14 1 6.6845 -3.2879 1.8046 15 7 2.0184 -0.6906 1.1961 16 6 2.1472 -0.0182 2.3572 17 8 1.8592 1.1586 2.4114 18 6 2.6501 -0.7285 3.5874 19 1 3.6494 -1.1203 3.3978 20 6 1.7065 -1.8827 3.9314 21 6 2.7009 0.2545 4.7588 22 6 3.3276 -0.4322 5.9739 23 6 3.3783 0.5362 7.1275 24 6 2.4217 0.4755 8.1235 25 6 2.4676 1.3639 9.1815 26 6 3.4704 2.3137 9.2451 27 6 4.4277 2.3761 8.2507 28 6 4.3827 1.4867 7.1901 29 9 5.3177 1.5473 6.2169 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -1.7197 -1.2952 34 1 1.7516 -0.1583 -2.1370 35 1 4.5995 0.9474 -0.9811 36 1 5.2419 -0.2024 -2.1785 37 1 3.7821 0.7463 -2.5493 38 1 6.8953 -0.6073 0.2847 39 1 2.2492 -1.6318 1.1525 40 1 0.7072 -1.4910 4.1210 41 1 1.6700 -2.5831 3.0970 42 1 2.0701 -2.3962 4.8215 43 1 1.6897 0.5780 5.0057 44 1 3.3017 1.1204 4.4807 45 1 4.3388 -0.7558 5.7270 46 1 2.7268 -1.2981 6.2520 47 1 1.6383 -0.2662 8.0750 48 1 1.7201 1.3156 9.9594 49 1 3.5055 3.0070 10.0725 50 1 5.2085 3.1208 8.2985 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699464751.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:19 Heat of formation + Delta-G solvation = -74.067971 kcal Electronic energy + Delta-G solvation = -29917.643550 eV Core-core repulsion = 25858.465210 eV Total energy + Delta-G solvation = -4059.178340 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -49.92730 -40.94874 -39.99329 -38.16769 -36.62969 -35.66245 -33.62870 -32.91551 -31.53667 -31.31918 -29.09771 -28.05176 -27.36609 -26.25750 -24.23889 -23.69943 -23.26444 -22.06240 -21.37729 -20.69790 -18.77722 -18.54006 -17.88997 -17.48590 -17.18803 -16.81793 -16.62818 -16.48967 -16.28043 -15.64138 -15.37574 -15.17280 -15.02890 -14.71477 -14.60813 -14.42098 -14.19988 -13.98846 -13.69318 -13.63128 -13.38173 -13.20590 -13.10242 -12.86944 -12.75485 -12.71769 -12.61260 -12.52177 -12.28851 -12.18118 -12.11512 -11.94577 -11.91536 -11.71905 -11.65335 -11.61173 -10.62334 -10.56084 -9.89175 -9.76705 -9.58803 -8.77001 -7.77149 -5.24544 0.19979 0.27538 1.46110 1.49658 1.58217 1.85018 2.48201 2.54049 2.67929 3.35610 3.39010 3.58077 3.69891 3.77045 3.85253 3.97230 4.03154 4.15955 4.17195 4.31992 4.40410 4.43083 4.46425 4.50403 4.56148 4.61258 4.68694 4.75971 4.83765 4.91042 4.92416 4.96995 4.97849 5.01543 5.05166 5.12862 5.20164 5.26867 5.28406 5.32132 5.36645 5.41302 5.45776 5.49686 5.65847 5.72711 5.84227 5.98666 6.34846 6.83960 7.17237 7.50179 7.89987 8.36623 9.26868 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011929 B = 0.003309 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.629400 B = 8458.650782 C = 9532.073155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.119 3.881 3 H 0.032 0.968 4 C 0.141 3.859 5 N -0.612 5.612 6 C 0.179 3.821 7 C -0.244 4.244 8 H 0.083 0.917 9 C -0.049 4.049 10 N -0.938 5.938 11 Si 0.954 3.046 12 H -0.255 1.255 13 H -0.302 1.302 14 H -0.298 1.298 15 N -0.685 5.685 16 C 0.512 3.488 17 O -0.604 6.604 18 C -0.107 4.107 19 H 0.081 0.919 20 C -0.134 4.134 21 C -0.077 4.077 22 C -0.075 4.075 23 C -0.127 4.127 24 C -0.091 4.091 25 C -0.124 4.124 26 C -0.096 4.096 27 C -0.165 4.165 28 C 0.059 3.941 29 F -0.161 7.161 30 H 0.038 0.962 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.071 0.929 35 H -0.012 1.012 36 H 0.020 0.980 37 H 0.026 0.974 38 H 0.241 0.759 39 H 0.406 0.594 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.070 0.930 44 H 0.027 0.973 45 H 0.059 0.941 46 H 0.112 0.888 47 H 0.158 0.842 48 H 0.163 0.837 49 H 0.162 0.838 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.830 -1.568 16.787 20.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.011 3.989 3 H 0.051 0.949 4 C 0.015 3.985 5 N -0.335 5.335 6 C 0.034 3.966 7 C -0.374 4.374 8 H 0.101 0.899 9 C -0.244 4.244 10 N -0.585 5.585 11 Si 0.784 3.216 12 H -0.178 1.178 13 H -0.230 1.230 14 H -0.225 1.225 15 N -0.334 5.334 16 C 0.299 3.701 17 O -0.486 6.486 18 C -0.128 4.128 19 H 0.099 0.901 20 C -0.191 4.191 21 C -0.115 4.115 22 C -0.112 4.112 23 C -0.128 4.128 24 C -0.109 4.109 25 C -0.142 4.142 26 C -0.114 4.114 27 C -0.184 4.184 28 C 0.040 3.960 29 F -0.139 7.139 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.006 0.994 36 H 0.039 0.961 37 H 0.045 0.955 38 H 0.050 0.950 39 H 0.242 0.758 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.110 0.890 43 H 0.089 0.911 44 H 0.046 0.954 45 H 0.077 0.923 46 H 0.131 0.869 47 H 0.176 0.824 48 H 0.181 0.819 49 H 0.179 0.821 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -11.844 -0.745 16.756 20.533 hybrid contribution 1.957 -0.322 -0.364 2.016 sum -9.887 -1.067 16.392 19.172 Atomic orbital electron populations 1.22002 0.93666 1.02738 1.01854 1.21691 0.94209 0.95923 0.87032 0.94916 1.21390 0.83213 0.99454 0.94463 1.44145 1.00886 1.22018 1.66423 1.20482 0.92859 0.90003 0.93264 1.19490 0.96759 0.90308 1.30838 0.89910 1.25685 0.99828 0.98289 1.00608 1.70290 1.12771 1.23719 1.51743 0.85384 0.78743 0.80817 0.76684 1.17821 1.23005 1.22538 1.45762 1.64753 1.14315 1.08538 1.21011 0.76486 0.86678 0.85910 1.90580 1.53701 1.17975 1.86385 1.21276 1.01387 0.97962 0.92224 0.90105 1.21793 0.98322 0.95557 1.03417 1.21150 1.01037 0.96489 0.92859 1.20605 1.01907 0.97409 0.91326 1.20155 0.95947 0.97731 0.98934 1.21336 0.97257 0.99822 0.92479 1.21655 0.99117 0.94628 0.98807 1.21404 0.93108 0.98828 0.98031 1.21420 1.02579 0.99845 0.94547 1.18195 0.89656 0.99809 0.88349 1.91462 1.64297 1.95968 1.62216 0.94327 0.90301 0.90753 0.91103 0.91062 0.99376 0.96083 0.95523 0.95005 0.75785 0.91443 0.91518 0.89025 0.91082 0.95430 0.92255 0.86944 0.82422 0.81944 0.82087 0.84174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 9.48 71.98 0.68 -3.45 16 2 C 0.12 4.48 2.88 44.99 0.13 4.61 16 3 H 0.03 1.51 7.58 -2.38 -0.02 1.49 16 4 C 0.14 5.23 5.36 86.38 0.46 5.70 16 5 N -0.61 -29.12 2.82 -726.91 -2.05 -31.17 16 6 C 0.18 9.08 9.01 127.77 1.15 10.24 16 7 C -0.24 -12.19 8.02 84.04 0.67 -11.52 16 8 H 0.08 3.83 7.84 -2.91 -0.02 3.81 16 9 C -0.05 -2.64 5.13 84.86 0.44 -2.20 16 10 N -0.94 -55.81 10.57 21.65 0.23 -55.58 16 11 Si 0.95 43.38 29.57 68.60 2.03 45.41 16 12 H -0.25 -10.47 7.11 99.48 0.71 -9.77 16 13 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 14 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 15 N -0.69 -26.48 4.38 -442.51 -1.94 -28.42 16 16 C 0.51 21.05 7.12 87.65 0.62 21.67 16 17 O -0.60 -29.33 15.58 -3.03 -0.05 -29.37 16 18 C -0.11 -3.55 2.73 -11.54 -0.03 -3.58 16 19 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 20 C -0.13 -3.06 8.84 71.98 0.64 -2.42 16 21 C -0.08 -2.48 4.01 30.59 0.12 -2.36 16 22 C -0.08 -1.92 4.82 29.85 0.14 -1.78 16 23 C -0.13 -3.14 5.14 -19.82 -0.10 -3.24 16 24 C -0.09 -1.60 9.67 22.26 0.22 -1.38 16 25 C -0.12 -1.75 10.04 22.27 0.22 -1.53 16 26 C -0.10 -1.50 10.04 22.26 0.22 -1.28 16 27 C -0.17 -3.65 10.03 22.31 0.22 -3.42 16 28 C 0.06 1.68 7.24 22.38 0.16 1.84 16 29 F -0.16 -5.69 16.66 44.97 0.75 -4.94 16 30 H 0.04 1.21 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.07 2.34 8.03 -2.39 -0.02 2.32 16 34 H 0.07 2.36 7.86 -2.39 -0.02 2.34 16 35 H -0.01 -0.71 7.44 -2.39 -0.02 -0.72 16 36 H 0.02 1.13 7.16 -2.38 -0.02 1.11 16 37 H 0.03 1.15 7.85 -2.39 -0.02 1.13 16 38 H 0.24 14.27 8.31 -92.71 -0.77 13.50 16 39 H 0.41 14.97 6.82 -92.71 -0.63 14.34 16 40 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.07 1.47 7.56 -2.39 -0.02 1.46 16 42 H 0.09 1.60 6.56 -2.39 -0.02 1.59 16 43 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.03 1.10 7.95 -2.39 -0.02 1.08 16 45 H 0.06 1.71 7.95 -2.39 -0.02 1.69 16 46 H 0.11 2.06 6.43 -2.39 -0.02 2.04 16 47 H 0.16 1.85 8.04 -2.91 -0.02 1.82 16 48 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 49 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 50 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -74.20 406.88 5.24 -68.96 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: 0.29 Total: 29.22 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 5.98 Total: 5.89 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -3.76 Total: -115.17 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.05 Total: -29.37 kcal Atomic # 9 Polarization: -5.69 SS G_CDS: 0.75 Total: -4.94 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -74.20 5.24 -68.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699464751.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.107 kcal (2) G-P(sol) polarization free energy of solvation -74.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds