Wall clock time and date at job start Tue Mar 31 2020 20:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47586 * 2 1 4 4 C 1.52999 * 109.47280 * 239.99402 * 2 1 3 5 5 C 1.52999 * 109.46675 * 65.00389 * 4 2 1 6 6 C 1.50706 * 109.47133 * 179.97438 * 5 4 2 7 7 C 1.38263 * 119.98486 * 269.72862 * 6 5 4 8 8 C 1.38230 * 120.04651 * 179.72177 * 7 6 5 9 9 C 1.38217 * 120.02558 * 0.55177 * 8 7 6 10 10 C 1.38438 * 119.97746 * 359.72025 * 9 8 7 11 11 F 1.35091 * 120.03039 * 180.02562 * 10 9 8 12 12 C 1.38175 * 119.98181 * 89.99903 * 6 5 4 13 13 C 1.50709 * 109.46856 * 119.99652 * 2 1 3 14 14 O 1.21282 * 119.99599 * 120.00324 * 13 2 1 15 15 N 1.34770 * 120.00222 * 299.99767 * 13 2 1 16 16 C 1.46495 * 120.00165 * 179.97438 * 15 13 2 17 17 H 1.09000 * 109.47256 * 325.00338 * 16 15 13 18 18 C 1.53004 * 109.47184 * 85.00207 * 16 15 13 19 19 C 1.52999 * 109.47502 * 205.00439 * 16 15 13 20 20 N 1.46499 * 109.47230 * 54.99570 * 19 16 15 21 21 C 1.46504 * 120.00471 * 270.00604 * 20 19 16 22 22 C 1.36940 * 119.99990 * 90.00453 * 20 19 16 23 23 H 1.08000 * 119.99952 * 20.37384 * 22 20 19 24 24 C 1.38809 * 120.00015 * 200.37666 * 22 20 19 25 25 N 1.31622 * 120.00388 * 15.02118 * 24 22 20 26 26 Si 1.86807 * 119.99697 * 195.01871 * 24 22 20 27 27 H 1.48499 * 109.46664 * 85.00503 * 26 24 22 28 28 H 1.48501 * 109.46709 * 205.00068 * 26 24 22 29 29 H 1.48496 * 109.47459 * 325.00143 * 26 24 22 30 30 H 1.09004 * 109.47300 * 300.00585 * 1 2 3 31 31 H 1.09000 * 109.46895 * 59.99966 * 1 2 3 32 32 H 1.08999 * 109.47093 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47256 * 305.00276 * 4 2 1 34 34 H 1.08997 * 109.47149 * 185.00027 * 4 2 1 35 35 H 1.08995 * 109.47371 * 59.99957 * 5 4 2 36 36 H 1.08997 * 109.47036 * 299.99707 * 5 4 2 37 37 H 1.07994 * 119.97719 * 359.97347 * 7 6 5 38 38 H 1.07995 * 119.98820 * 180.26894 * 8 7 6 39 39 H 1.08001 * 120.01171 * 179.74557 * 9 8 7 40 40 H 1.07995 * 120.02168 * 359.97438 * 12 6 5 41 41 H 0.97001 * 120.00080 * 0.02562 * 15 13 2 42 42 H 1.09000 * 109.47093 * 180.02562 * 18 16 15 43 43 H 1.09000 * 109.46927 * 299.99757 * 18 16 15 44 44 H 1.09000 * 109.46917 * 59.99923 * 18 16 15 45 45 H 1.08996 * 109.47571 * 174.99740 * 19 16 15 46 46 H 1.09000 * 109.46810 * 294.99994 * 19 16 15 47 47 H 1.08994 * 109.47218 * 95.15336 * 21 20 19 48 48 H 1.09001 * 109.47134 * 215.15440 * 21 20 19 49 49 H 1.09002 * 109.46483 * 335.15603 * 21 20 19 50 50 H 0.96994 * 119.99901 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6353 0.0688 -2.4952 6 6 2.1382 -0.6413 -3.7257 7 6 3.3896 -0.3434 -4.2325 8 6 3.8544 -0.9981 -5.3577 9 6 3.0640 -1.9432 -5.9840 10 6 1.8086 -2.2384 -5.4807 11 9 1.0353 -3.1623 -6.0916 12 6 1.3461 -1.5859 -4.3500 13 6 2.0323 -0.7104 1.2306 14 8 2.7296 -1.6965 1.1193 15 7 1.7067 -0.2499 2.4546 16 6 2.1945 -0.9407 3.6508 17 1 2.2308 -2.0135 3.4614 18 6 3.5973 -0.4359 3.9949 19 6 1.2504 -0.6613 4.8219 20 7 -0.1158 -1.0351 4.4477 21 6 -0.9990 -0.0495 3.8194 22 6 -0.5673 -2.3059 4.6852 23 1 -0.0739 -2.9260 5.4190 24 6 -1.6592 -2.7971 3.9828 25 7 -2.0765 -2.1787 2.8984 26 14 -2.5362 -4.3360 4.5765 27 1 -3.5433 -3.9666 5.6033 28 1 -3.2155 -4.9918 3.4303 29 1 -1.5471 -5.2726 5.1676 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -1.7199 -1.2950 34 1 3.1263 -0.7996 -1.2055 35 1 2.0699 1.0673 -2.4494 36 1 0.5490 0.1470 -2.5389 37 1 4.0059 0.3985 -3.7467 38 1 4.8338 -0.7677 -5.7503 39 1 3.4258 -2.4517 -6.8655 40 1 0.3671 -1.8156 -3.9562 41 1 1.1488 0.5386 2.5436 42 1 3.9604 -0.9503 4.8847 43 1 4.2699 -0.6351 3.1607 44 1 3.5610 0.6369 4.1843 45 1 1.5626 -1.2452 5.6877 46 1 1.2820 0.3999 5.0688 47 1 -0.9529 -0.1588 2.7359 48 1 -2.0225 -0.2109 4.1577 49 1 -0.6786 0.9547 4.0973 50 1 -2.8393 -2.5222 2.4074 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699469807.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:31 Heat of formation + Delta-G solvation = -57.335167 kcal Electronic energy + Delta-G solvation = -29426.773033 eV Core-core repulsion = 25368.320281 eV Total energy + Delta-G solvation = -4058.452752 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -49.01424 -39.68817 -39.15879 -36.54699 -35.33811 -33.95994 -32.46790 -31.10527 -30.70938 -30.05414 -28.10459 -26.20000 -25.63084 -25.14721 -23.12403 -22.80743 -21.62964 -20.91573 -20.01974 -19.30324 -17.52793 -16.80731 -16.54872 -16.47012 -16.29924 -15.72082 -15.52418 -15.09064 -14.84657 -14.28491 -14.09300 -13.84141 -13.67951 -13.57941 -13.27687 -13.16607 -12.87416 -12.80594 -12.45041 -12.26761 -12.16387 -11.95743 -11.77572 -11.55208 -11.41097 -11.31039 -11.18808 -11.06417 -10.83409 -10.78122 -10.60965 -10.54289 -10.48669 -10.17933 -9.94937 -9.82675 -9.16651 -9.04592 -8.80319 -8.57376 -8.29226 -6.77012 -5.72638 -3.14790 0.98535 1.03258 3.29024 3.39287 3.39942 3.46759 3.47268 3.85675 4.07681 4.48670 4.52009 4.57834 4.83454 4.98353 5.03995 5.08236 5.16379 5.21333 5.35622 5.42807 5.48715 5.52601 5.60100 5.65866 5.75004 5.76816 5.88633 5.89286 5.94276 6.01315 6.07630 6.09915 6.12505 6.14545 6.20486 6.26535 6.41255 6.47091 6.49377 6.55030 6.63237 6.68738 6.73447 6.91192 7.24628 7.32758 7.66134 7.81448 8.21245 8.37979 8.91973 9.23281 9.86400 10.33389 11.32671 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012027 B = 0.002810 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.587414 B = 9962.747436 C =11382.471568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 H 0.088 0.912 4 C -0.091 4.091 5 C -0.085 4.085 6 C -0.044 4.044 7 C -0.129 4.129 8 C -0.090 4.090 9 C -0.164 4.164 10 C 0.099 3.901 11 F -0.142 7.142 12 C -0.151 4.151 13 C 0.521 3.479 14 O -0.554 6.554 15 N -0.698 5.698 16 C 0.116 3.884 17 H 0.084 0.916 18 C -0.158 4.158 19 C 0.143 3.857 20 N -0.597 5.597 21 C 0.159 3.841 22 C -0.254 4.254 23 H 0.068 0.932 24 C 0.005 3.995 25 N -0.902 5.902 26 Si 0.902 3.098 27 H -0.289 1.289 28 H -0.292 1.292 29 H -0.281 1.281 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.394 0.606 42 H 0.059 0.941 43 H 0.050 0.950 44 H 0.048 0.952 45 H 0.058 0.942 46 H 0.041 0.959 47 H 0.036 0.964 48 H 0.042 0.958 49 H -0.007 1.007 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.776 9.461 -13.009 18.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.106 0.894 4 C -0.129 4.129 5 C -0.122 4.122 6 C -0.044 4.044 7 C -0.147 4.147 8 C -0.108 4.108 9 C -0.183 4.183 10 C 0.080 3.920 11 F -0.120 7.120 12 C -0.169 4.169 13 C 0.307 3.693 14 O -0.433 6.433 15 N -0.347 5.347 16 C 0.009 3.991 17 H 0.102 0.898 18 C -0.217 4.217 19 C 0.015 3.985 20 N -0.319 5.319 21 C 0.014 3.986 22 C -0.384 4.384 23 H 0.086 0.914 24 C -0.194 4.194 25 N -0.547 5.547 26 Si 0.732 3.268 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.207 1.207 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.154 0.846 41 H 0.228 0.772 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.076 0.924 46 H 0.059 0.941 47 H 0.054 0.946 48 H 0.061 0.939 49 H 0.012 0.988 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 10.066 8.672 -13.184 18.718 hybrid contribution -0.974 -0.810 0.094 1.270 sum 9.092 7.862 -13.090 17.771 Atomic orbital electron populations 1.21809 0.92080 1.03951 1.02054 1.21288 0.98260 0.99988 0.93430 0.89419 1.21334 1.01668 0.99199 0.90709 1.20781 1.01881 0.98474 0.91105 1.19808 0.93697 0.95128 0.95797 1.21148 0.95776 1.00991 0.96761 1.20986 0.99400 0.95139 0.95297 1.21112 0.93640 1.01202 1.02327 1.17730 0.90153 0.90375 0.93742 1.91498 1.74568 1.63693 1.82252 1.21124 1.01929 0.98283 0.95602 1.20390 0.79821 0.84381 0.84748 1.90638 1.39234 1.26484 1.86932 1.45784 1.52290 1.31316 1.05339 1.21829 0.92458 0.98141 0.86705 0.89817 1.22148 0.97868 1.00516 1.01211 1.21181 0.85482 0.97649 0.94238 1.43904 1.06922 1.09677 1.71397 1.20910 0.93968 0.86432 0.97251 1.19165 1.12146 0.90893 1.16180 0.91435 1.24903 1.00593 0.98064 0.95815 1.70047 1.27396 1.41201 1.16092 0.86312 0.79787 0.83021 0.77643 1.21616 1.21847 1.20668 0.91556 0.92330 0.91207 0.90956 0.91165 0.90560 0.90113 0.85324 0.85140 0.85034 0.84572 0.77223 0.92232 0.93055 0.93286 0.92423 0.94103 0.94592 0.93899 0.98812 0.93949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.84 37.16 0.33 -1.71 16 2 C -0.11 -1.50 2.72 -91.77 -0.25 -1.75 16 3 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.09 -1.21 4.01 -26.73 -0.11 -1.31 16 5 C -0.09 -0.86 5.10 -27.88 -0.14 -1.00 16 6 C -0.04 -0.47 5.13 -104.63 -0.54 -1.01 16 7 C -0.13 -1.21 9.70 -39.57 -0.38 -1.59 16 8 C -0.09 -0.79 10.04 -39.59 -0.40 -1.18 16 9 C -0.16 -1.61 10.03 -39.52 -0.40 -2.00 16 10 C 0.10 1.16 7.30 -39.41 -0.29 0.87 16 11 F -0.14 -1.79 17.27 2.25 0.04 -1.75 16 12 C -0.15 -1.74 9.68 -39.51 -0.38 -2.12 16 13 C 0.52 9.54 7.12 -10.98 -0.08 9.46 16 14 O -0.55 -12.24 15.58 5.56 0.09 -12.15 16 15 N -0.70 -12.33 4.32 -53.81 -0.23 -12.57 16 16 C 0.12 2.16 2.88 -67.93 -0.20 1.97 16 17 H 0.08 1.91 7.58 -51.93 -0.39 1.52 16 18 C -0.16 -2.38 9.48 37.16 0.35 -2.03 16 19 C 0.14 2.73 5.33 -4.04 -0.02 2.71 16 20 N -0.60 -14.05 2.78 -181.12 -0.50 -14.55 16 21 C 0.16 3.56 7.60 59.85 0.45 4.02 16 22 C -0.25 -6.81 9.68 -15.06 -0.15 -6.96 16 23 H 0.07 1.80 7.86 -52.49 -0.41 1.39 16 24 C 0.00 0.13 5.06 -17.43 -0.09 0.04 16 25 N -0.90 -25.16 10.67 55.49 0.59 -24.57 16 26 Si 0.90 21.95 29.58 -169.99 -5.03 16.92 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 29 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 30 H 0.07 1.01 6.25 -51.93 -0.32 0.68 16 31 H 0.06 0.67 6.56 -51.93 -0.34 0.33 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.07 0.98 7.95 -51.93 -0.41 0.56 16 35 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16 36 H 0.08 0.78 6.51 -51.93 -0.34 0.45 16 37 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.14 1.51 8.06 -52.49 -0.42 1.08 16 41 H 0.39 6.37 6.60 -40.82 -0.27 6.10 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.06 1.09 8.03 -51.93 -0.42 0.67 16 46 H 0.04 0.69 7.86 -51.93 -0.41 0.28 16 47 H 0.04 0.84 5.66 -51.93 -0.29 0.54 16 48 H 0.04 1.07 7.22 -51.93 -0.37 0.70 16 49 H -0.01 -0.13 7.83 -51.93 -0.41 -0.53 16 50 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 404.62 15.07 6.10 6.10 Total: -1.00 -31.43 404.62 -9.40 -40.83 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -8.17 Total: 5.35 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -2.28 Total: -3.62 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: -0.14 Total: -51.69 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.09 Total: -12.15 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.43 -9.40 -40.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699469807.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.503 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds