Wall clock time and date at job start Tue Mar 31 2020 20:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47586 * 2 1 4 4 C 1.52999 * 109.47280 * 239.99402 * 2 1 3 5 5 C 1.52999 * 109.46675 * 65.00389 * 4 2 1 6 6 C 1.50706 * 109.47133 * 179.97438 * 5 4 2 7 7 C 1.38263 * 119.98486 * 269.72862 * 6 5 4 8 8 C 1.38230 * 120.04651 * 179.72177 * 7 6 5 9 9 C 1.38217 * 120.02558 * 0.55177 * 8 7 6 10 10 C 1.38438 * 119.97746 * 359.72025 * 9 8 7 11 11 F 1.35091 * 120.03039 * 180.02562 * 10 9 8 12 12 C 1.38175 * 119.98181 * 89.99903 * 6 5 4 13 13 C 1.50709 * 109.46856 * 119.99652 * 2 1 3 14 14 O 1.21282 * 119.99599 * 120.00324 * 13 2 1 15 15 N 1.34770 * 120.00222 * 299.99767 * 13 2 1 16 16 C 1.46495 * 120.00165 * 179.97438 * 15 13 2 17 17 H 1.09000 * 109.47256 * 325.00338 * 16 15 13 18 18 C 1.53004 * 109.47184 * 85.00207 * 16 15 13 19 19 C 1.52999 * 109.47502 * 205.00439 * 16 15 13 20 20 N 1.46499 * 109.47230 * 54.99570 * 19 16 15 21 21 C 1.46504 * 120.00471 * 270.00604 * 20 19 16 22 22 C 1.36940 * 119.99990 * 90.00453 * 20 19 16 23 23 H 1.08000 * 119.99952 * 20.37384 * 22 20 19 24 24 C 1.38809 * 120.00015 * 200.37666 * 22 20 19 25 25 N 1.31622 * 120.00388 * 15.02118 * 24 22 20 26 26 Si 1.86807 * 119.99697 * 195.01871 * 24 22 20 27 27 H 1.48499 * 109.46664 * 85.00503 * 26 24 22 28 28 H 1.48501 * 109.46709 * 205.00068 * 26 24 22 29 29 H 1.48496 * 109.47459 * 325.00143 * 26 24 22 30 30 H 1.09004 * 109.47300 * 300.00585 * 1 2 3 31 31 H 1.09000 * 109.46895 * 59.99966 * 1 2 3 32 32 H 1.08999 * 109.47093 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47256 * 305.00276 * 4 2 1 34 34 H 1.08997 * 109.47149 * 185.00027 * 4 2 1 35 35 H 1.08995 * 109.47371 * 59.99957 * 5 4 2 36 36 H 1.08997 * 109.47036 * 299.99707 * 5 4 2 37 37 H 1.07994 * 119.97719 * 359.97347 * 7 6 5 38 38 H 1.07995 * 119.98820 * 180.26894 * 8 7 6 39 39 H 1.08001 * 120.01171 * 179.74557 * 9 8 7 40 40 H 1.07995 * 120.02168 * 359.97438 * 12 6 5 41 41 H 0.97001 * 120.00080 * 0.02562 * 15 13 2 42 42 H 1.09000 * 109.47093 * 180.02562 * 18 16 15 43 43 H 1.09000 * 109.46927 * 299.99757 * 18 16 15 44 44 H 1.09000 * 109.46917 * 59.99923 * 18 16 15 45 45 H 1.08996 * 109.47571 * 174.99740 * 19 16 15 46 46 H 1.09000 * 109.46810 * 294.99994 * 19 16 15 47 47 H 1.08994 * 109.47218 * 95.15336 * 21 20 19 48 48 H 1.09001 * 109.47134 * 215.15440 * 21 20 19 49 49 H 1.09002 * 109.46483 * 335.15603 * 21 20 19 50 50 H 0.96994 * 119.99901 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6353 0.0688 -2.4952 6 6 2.1382 -0.6413 -3.7257 7 6 3.3896 -0.3434 -4.2325 8 6 3.8544 -0.9981 -5.3577 9 6 3.0640 -1.9432 -5.9840 10 6 1.8086 -2.2384 -5.4807 11 9 1.0353 -3.1623 -6.0916 12 6 1.3461 -1.5859 -4.3500 13 6 2.0323 -0.7104 1.2306 14 8 2.7296 -1.6965 1.1193 15 7 1.7067 -0.2499 2.4546 16 6 2.1945 -0.9407 3.6508 17 1 2.2308 -2.0135 3.4614 18 6 3.5973 -0.4359 3.9949 19 6 1.2504 -0.6613 4.8219 20 7 -0.1158 -1.0351 4.4477 21 6 -0.9990 -0.0495 3.8194 22 6 -0.5673 -2.3059 4.6852 23 1 -0.0739 -2.9260 5.4190 24 6 -1.6592 -2.7971 3.9828 25 7 -2.0765 -2.1787 2.8984 26 14 -2.5362 -4.3360 4.5765 27 1 -3.5433 -3.9666 5.6033 28 1 -3.2155 -4.9918 3.4303 29 1 -1.5471 -5.2726 5.1676 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -1.7199 -1.2950 34 1 3.1263 -0.7996 -1.2055 35 1 2.0699 1.0673 -2.4494 36 1 0.5490 0.1470 -2.5389 37 1 4.0059 0.3985 -3.7467 38 1 4.8338 -0.7677 -5.7503 39 1 3.4258 -2.4517 -6.8655 40 1 0.3671 -1.8156 -3.9562 41 1 1.1488 0.5386 2.5436 42 1 3.9604 -0.9503 4.8847 43 1 4.2699 -0.6351 3.1607 44 1 3.5610 0.6369 4.1843 45 1 1.5626 -1.2452 5.6877 46 1 1.2820 0.3999 5.0688 47 1 -0.9529 -0.1588 2.7359 48 1 -2.0225 -0.2109 4.1577 49 1 -0.6786 0.9547 4.0973 50 1 -2.8393 -2.5222 2.4074 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699469807.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:30 Heat of formation + Delta-G solvation = -74.047757 kcal Electronic energy + Delta-G solvation = -29427.497745 eV Core-core repulsion = 25368.320281 eV Total energy + Delta-G solvation = -4059.177464 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.92750 -40.97877 -40.08763 -38.13720 -36.54032 -35.67223 -33.55391 -32.85123 -31.60364 -31.38731 -29.09132 -27.96238 -27.38282 -26.27146 -24.29652 -23.66126 -23.13453 -22.04466 -21.47325 -20.63614 -18.76445 -18.46251 -17.72210 -17.38672 -17.12706 -17.06362 -16.73294 -16.62792 -16.23124 -15.64341 -15.43264 -15.15569 -15.06497 -14.70065 -14.69058 -14.34716 -14.14281 -13.86310 -13.71091 -13.54640 -13.44232 -13.19596 -13.01250 -12.83257 -12.72618 -12.65806 -12.55106 -12.43432 -12.37618 -12.25021 -12.11097 -12.01067 -11.80515 -11.70449 -11.62456 -11.50723 -10.62096 -10.53851 -9.89713 -9.82743 -9.60716 -8.70970 -7.79768 -5.21717 0.19649 0.26212 1.43530 1.44890 1.51327 1.85404 2.45993 2.52881 2.66295 3.26585 3.33122 3.65732 3.72841 3.81341 3.87637 4.01777 4.06717 4.19136 4.21468 4.31645 4.39041 4.43015 4.48142 4.54372 4.56698 4.64231 4.76492 4.78624 4.86985 4.93040 4.94576 4.99842 5.02319 5.05678 5.07242 5.15411 5.19509 5.24296 5.37784 5.39822 5.41716 5.42238 5.45940 5.62253 5.67709 5.81141 5.88524 5.97562 6.35740 6.79983 7.20659 7.50232 7.93607 8.32651 9.21821 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012027 B = 0.002810 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.587414 B = 9962.747436 C =11382.471568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 H 0.132 0.868 4 C -0.083 4.083 5 C -0.075 4.075 6 C -0.057 4.057 7 C -0.128 4.128 8 C -0.087 4.087 9 C -0.166 4.166 10 C 0.071 3.929 11 F -0.155 7.155 12 C -0.170 4.170 13 C 0.509 3.491 14 O -0.601 6.601 15 N -0.694 5.694 16 C 0.121 3.879 17 H 0.030 0.970 18 C -0.144 4.144 19 C 0.142 3.858 20 N -0.611 5.611 21 C 0.169 3.831 22 C -0.260 4.260 23 H 0.063 0.937 24 C -0.047 4.047 25 N -0.921 5.921 26 Si 0.954 3.046 27 H -0.284 1.284 28 H -0.300 1.300 29 H -0.278 1.278 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.023 0.977 33 H 0.034 0.966 34 H 0.063 0.937 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.154 0.846 38 H 0.164 0.836 39 H 0.150 0.850 40 H 0.128 0.872 41 H 0.404 0.596 42 H 0.072 0.928 43 H 0.039 0.961 44 H 0.077 0.923 45 H 0.059 0.941 46 H 0.077 0.923 47 H 0.024 0.976 48 H 0.009 0.991 49 H 0.035 0.965 50 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.539 12.306 -13.091 21.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.118 4.118 3 H 0.149 0.851 4 C -0.121 4.121 5 C -0.112 4.112 6 C -0.057 4.057 7 C -0.146 4.146 8 C -0.105 4.105 9 C -0.184 4.184 10 C 0.052 3.948 11 F -0.134 7.134 12 C -0.189 4.189 13 C 0.296 3.704 14 O -0.482 6.482 15 N -0.343 5.343 16 C 0.013 3.987 17 H 0.049 0.951 18 C -0.203 4.203 19 C 0.015 3.985 20 N -0.333 5.333 21 C 0.025 3.975 22 C -0.390 4.390 23 H 0.080 0.920 24 C -0.242 4.242 25 N -0.567 5.567 26 Si 0.784 3.216 27 H -0.211 1.211 28 H -0.227 1.227 29 H -0.204 1.204 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.126 0.874 36 H 0.101 0.899 37 H 0.172 0.828 38 H 0.181 0.819 39 H 0.167 0.833 40 H 0.146 0.854 41 H 0.239 0.761 42 H 0.091 0.909 43 H 0.058 0.942 44 H 0.096 0.904 45 H 0.078 0.922 46 H 0.095 0.905 47 H 0.042 0.958 48 H 0.028 0.972 49 H 0.053 0.947 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 11.836 11.548 -13.237 21.182 hybrid contribution -1.452 -1.695 0.165 2.238 sum 10.384 9.853 -13.072 19.385 Atomic orbital electron populations 1.21719 0.92412 1.01345 1.03442 1.21321 0.97563 1.01663 0.91289 0.85062 1.21219 1.00880 0.97865 0.92143 1.20720 1.02279 0.99175 0.89022 1.19944 0.94420 0.95214 0.96133 1.21515 0.95217 1.01088 0.96731 1.21401 1.00401 0.93973 0.94696 1.21420 0.92818 1.01335 1.02840 1.18053 0.91216 0.91048 0.94474 1.91456 1.75091 1.64287 1.82518 1.21234 1.02195 0.99236 0.96201 1.21254 0.79054 0.83994 0.86057 1.90613 1.41429 1.28578 1.87621 1.45785 1.52095 1.31315 1.05102 1.21616 0.94732 0.95496 0.86812 0.95118 1.22004 0.94759 1.02303 1.01248 1.21350 0.83244 0.99684 0.94184 1.44097 1.09018 1.08822 1.71403 1.20738 0.92310 0.88099 0.96375 1.19398 1.11901 0.92203 1.15521 0.91956 1.25516 1.01725 1.00625 0.96383 1.70180 1.27505 1.42206 1.16826 0.85486 0.78796 0.80498 0.76846 1.21065 1.22735 1.20387 0.92163 0.88861 0.95743 0.94728 0.91776 0.87443 0.89856 0.82801 0.81873 0.83272 0.85430 0.76066 0.90880 0.94217 0.90371 0.92242 0.90504 0.95812 0.97186 0.94672 0.94761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.74 8.84 71.98 0.64 -3.10 16 2 C -0.10 -2.58 2.72 -11.54 -0.03 -2.61 16 3 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 4 C -0.08 -2.16 4.01 30.59 0.12 -2.04 16 5 C -0.08 -1.37 5.10 29.85 0.15 -1.22 16 6 C -0.06 -1.15 5.13 -19.87 -0.10 -1.25 16 7 C -0.13 -2.06 9.70 22.27 0.22 -1.85 16 8 C -0.09 -1.29 10.04 22.26 0.22 -1.06 16 9 C -0.17 -3.04 10.03 22.31 0.22 -2.82 16 10 C 0.07 1.70 7.30 22.38 0.16 1.86 16 11 F -0.15 -4.11 17.27 44.97 0.78 -3.33 16 12 C -0.17 -4.05 9.68 22.32 0.22 -3.83 16 13 C 0.51 18.68 7.12 87.66 0.62 19.30 16 14 O -0.60 -27.47 15.58 -3.04 -0.05 -27.52 16 15 N -0.69 -23.91 4.32 -442.54 -1.91 -25.82 16 16 C 0.12 4.44 2.88 44.99 0.13 4.57 16 17 H 0.03 1.45 7.58 -2.39 -0.02 1.43 16 18 C -0.14 -4.03 9.48 71.98 0.68 -3.35 16 19 C 0.14 5.20 5.33 86.38 0.46 5.66 16 20 N -0.61 -28.50 2.78 -726.94 -2.02 -30.52 16 21 C 0.17 7.46 7.60 127.77 0.97 8.43 16 22 C -0.26 -14.08 9.68 84.03 0.81 -13.26 16 23 H 0.06 3.37 7.86 -2.91 -0.02 3.35 16 24 C -0.05 -2.60 5.06 84.86 0.43 -2.17 16 25 N -0.92 -52.80 10.67 21.65 0.23 -52.57 16 26 Si 0.95 46.12 29.58 68.60 2.03 48.15 16 27 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 28 H -0.30 -14.82 7.11 99.48 0.71 -14.12 16 29 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 30 H 0.06 1.77 6.25 -2.38 -0.01 1.76 16 31 H 0.09 1.97 6.56 -2.39 -0.02 1.95 16 32 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.06 1.74 7.95 -2.39 -0.02 1.72 16 35 H 0.11 1.33 8.08 -2.39 -0.02 1.31 16 36 H 0.08 1.48 6.51 -2.39 -0.02 1.46 16 37 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 38 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 39 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 40 H 0.13 3.09 8.06 -2.91 -0.02 3.06 16 41 H 0.40 12.20 6.60 -92.71 -0.61 11.59 16 42 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.06 2.15 8.03 -2.39 -0.02 2.13 16 46 H 0.08 2.29 7.86 -2.39 -0.02 2.27 16 47 H 0.02 1.10 5.66 -2.39 -0.01 1.09 16 48 H 0.01 0.47 7.22 -2.39 -0.02 0.46 16 49 H 0.03 1.24 7.83 -2.39 -0.02 1.22 16 50 H 0.24 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -72.89 404.62 5.30 -67.58 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.32 Total: 22.79 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 5.93 Total: 1.25 kcal Atomic # 7 Polarization: -105.21 SS G_CDS: -3.70 Total: -108.92 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.05 Total: -27.52 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.78 Total: -3.33 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -72.89 5.30 -67.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699469807.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.465 kcal (2) G-P(sol) polarization free energy of solvation -72.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds