Wall clock time and date at job start Tue Mar 31 2020 19:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99948 * 2 1 4 4 C 1.53006 * 109.47036 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.46995 * 180.02562 * 4 3 2 6 6 C 1.35035 * 124.88424 * 125.00443 * 5 4 3 7 7 C 1.35367 * 107.22726 * 179.97438 * 6 5 4 8 8 C 1.41492 * 105.50440 * 359.97438 * 7 6 5 9 9 C 1.47717 * 126.51787 * 180.02562 * 8 7 6 10 10 O 1.21567 * 119.99554 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99666 * 180.02562 * 9 8 7 12 12 C 1.47016 * 125.65113 * 0.02562 * 11 9 8 13 13 C 1.54332 * 107.26817 * 181.02253 * 12 11 9 14 14 H 1.09007 * 110.71275 * 140.73602 * 13 12 11 15 15 C 1.52992 * 110.72203 * 263.83197 * 13 12 11 16 16 C 1.55149 * 102.94216 * 22.19934 * 13 12 11 17 17 H 1.09001 * 111.01389 * 82.60421 * 16 13 12 18 18 C 1.53000 * 111.00463 * 206.42178 * 16 13 12 19 19 N 1.46499 * 109.47617 * 184.99914 * 18 16 13 20 20 C 1.36930 * 120.00254 * 180.02562 * 19 18 16 21 21 H 1.07996 * 120.00229 * 359.97438 * 20 19 18 22 22 C 1.38821 * 120.00014 * 179.97438 * 20 19 18 23 23 N 1.31616 * 119.99912 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99841 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47208 * 60.00163 * 24 22 20 26 26 H 1.48503 * 109.46843 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47182 * 299.99790 * 24 22 20 28 28 C 1.47431 * 125.64029 * 179.71857 * 11 9 8 29 29 N 1.28470 * 124.88609 * 304.70081 * 5 4 3 30 30 H 1.08995 * 109.47392 * 299.99575 * 1 2 3 31 31 H 1.09003 * 109.47182 * 59.99587 * 1 2 3 32 32 H 1.08999 * 109.47444 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46798 * 60.00190 * 3 2 1 34 34 H 1.08993 * 109.47318 * 299.99656 * 3 2 1 35 35 H 1.09001 * 109.46801 * 300.00369 * 4 3 2 36 36 H 1.09001 * 109.46998 * 59.99965 * 4 3 2 37 37 H 1.08001 * 126.38284 * 359.97438 * 6 5 4 38 38 H 1.08002 * 127.24344 * 179.97438 * 7 6 5 39 39 H 1.08994 * 109.88694 * 300.44232 * 12 11 9 40 40 H 1.08999 * 109.88208 * 61.61411 * 12 11 9 41 41 H 1.08993 * 109.47121 * 58.54538 * 15 13 12 42 42 H 1.08998 * 109.47164 * 178.55215 * 15 13 12 43 43 H 1.09006 * 109.47282 * 298.54769 * 15 13 12 44 44 H 1.09000 * 109.46875 * 304.99737 * 18 16 13 45 45 H 1.09001 * 109.46969 * 64.99645 * 18 16 13 46 46 H 0.97001 * 119.99685 * 359.97438 * 19 18 16 47 47 H 0.96999 * 119.99769 * 179.97438 * 23 22 20 48 48 H 1.08998 * 110.36227 * 274.74157 * 28 11 9 49 49 H 1.08991 * 110.36959 * 37.06534 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1313 2.5229 0.0013 6 6 5.0255 2.9698 0.9091 7 6 5.3356 4.2438 0.5729 8 6 4.5742 4.5252 -0.5860 9 6 4.5610 5.7938 -1.3426 10 8 5.2538 6.7247 -0.9803 11 7 3.7808 5.9192 -2.4344 12 6 2.8975 4.8786 -2.9804 13 6 2.2272 5.4623 -4.2421 14 1 2.1556 4.7072 -5.0250 15 6 0.8447 6.0264 -3.9088 16 6 3.1984 6.5988 -4.6573 17 1 4.0354 6.2062 -5.2346 18 6 2.4631 7.6911 -5.4364 19 7 3.4283 8.6846 -5.9136 20 6 2.9986 9.7628 -6.6401 21 1 1.9482 9.8806 -6.8617 22 6 3.9132 10.7044 -7.0917 23 7 5.1932 10.5611 -6.8211 24 14 3.3270 12.1750 -8.0834 25 1 2.3668 12.9671 -7.2737 26 1 4.4904 13.0253 -8.4425 27 1 2.6581 11.7019 -9.3219 28 6 3.6671 7.1249 -3.2751 29 7 3.8825 3.4384 -0.8650 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6887 1.8463 -0.8899 35 1 3.8567 0.6438 0.8909 36 1 3.8575 0.6435 -0.8891 37 1 5.4198 2.4142 1.7471 38 1 6.0200 4.9061 1.0822 39 1 3.4820 3.9975 -3.2451 40 1 2.1372 4.6145 -2.2454 41 1 0.9418 6.7994 -3.1465 42 1 0.4012 6.4557 -4.8071 43 1 0.2060 5.2260 -3.5352 44 1 1.9487 7.2461 -6.2882 45 1 1.7356 8.1751 -4.7848 46 1 4.3717 8.5789 -5.7142 47 1 5.8323 11.2189 -7.1370 48 1 2.9296 7.8104 -2.8575 49 1 4.6353 7.6171 -3.3655 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699962839.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:10 Heat of formation + Delta-G solvation = 20.440770 kcal Electronic energy + Delta-G solvation = -29230.350968 eV Core-core repulsion = 25195.190795 eV Total energy + Delta-G solvation = -4035.160172 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.90565 -39.88659 -38.54642 -37.77224 -34.63103 -34.30061 -32.77046 -31.09813 -30.97850 -30.00029 -28.83003 -27.00438 -26.52219 -25.66985 -24.30943 -23.18422 -22.11232 -21.78570 -21.17194 -19.31721 -19.14514 -17.84568 -17.29610 -16.88015 -16.68490 -16.53541 -16.10171 -15.82444 -15.43824 -14.94984 -14.74704 -14.49674 -14.18196 -13.86293 -13.62717 -13.44137 -13.40886 -13.14192 -12.82302 -12.61305 -12.45981 -12.31200 -12.20166 -12.15523 -11.91226 -11.67948 -11.53812 -11.08553 -10.91483 -10.78326 -10.44492 -10.33176 -10.31963 -10.26585 -9.99407 -9.91383 -9.61928 -9.49234 -9.30472 -8.81658 -8.41785 -6.86832 -5.70325 -2.99428 1.43619 1.90898 1.97176 3.07658 3.29431 3.47167 3.48194 3.52210 3.53685 3.98476 4.26882 4.37698 4.52285 4.58137 4.62476 4.68126 4.75271 4.79359 4.84556 4.98716 5.03639 5.04804 5.14950 5.19183 5.39973 5.45619 5.55254 5.57775 5.62438 5.65312 5.69657 5.91231 5.99852 6.04650 6.12743 6.15611 6.24273 6.28635 6.38565 6.42110 6.47032 6.50191 6.59306 6.75788 6.90040 7.58989 7.71255 7.74232 8.30500 8.48013 9.58961 10.16892 10.51186 11.52332 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017633 B = 0.002361 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.591634 B =11858.084369 C =13165.472300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.390 6.390 3 C 0.050 3.950 4 C 0.126 3.874 5 N -0.287 5.287 6 C -0.017 4.017 7 C -0.177 4.177 8 C -0.003 4.003 9 C 0.611 3.389 10 O -0.531 6.531 11 N -0.604 5.604 12 C 0.118 3.882 13 C -0.100 4.100 14 H 0.087 0.913 15 C -0.143 4.143 16 C -0.101 4.101 17 H 0.085 0.915 18 C 0.166 3.834 19 N -0.733 5.733 20 C -0.240 4.240 21 H 0.069 0.931 22 C -0.014 4.014 23 N -0.932 5.932 24 Si 0.907 3.093 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.287 1.287 28 C 0.118 3.882 29 N -0.258 5.258 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.183 0.817 38 H 0.164 0.836 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.066 0.934 43 H 0.050 0.950 44 H 0.023 0.977 45 H 0.025 0.975 46 H 0.384 0.616 47 H 0.256 0.744 48 H 0.072 0.928 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.587 -25.226 17.467 31.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.028 4.028 4 C 0.005 3.995 5 N -0.076 5.076 6 C -0.158 4.158 7 C -0.205 4.205 8 C -0.164 4.164 9 C 0.397 3.603 10 O -0.406 6.406 11 N -0.337 5.337 12 C -0.005 4.005 13 C -0.120 4.120 14 H 0.106 0.894 15 C -0.200 4.200 16 C -0.121 4.121 17 H 0.104 0.896 18 C 0.038 3.962 19 N -0.378 5.378 20 C -0.372 4.372 21 H 0.087 0.913 22 C -0.210 4.210 23 N -0.580 5.580 24 Si 0.738 3.262 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.004 4.004 29 N -0.093 5.093 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.130 0.870 36 H 0.121 0.879 37 H 0.200 0.800 38 H 0.181 0.819 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.041 0.959 45 H 0.043 0.957 46 H 0.218 0.782 47 H 0.065 0.935 48 H 0.090 0.910 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.985 -25.339 16.889 31.481 hybrid contribution 0.413 1.191 0.137 1.268 sum -7.572 -24.148 17.026 30.502 Atomic orbital electron populations 1.22801 0.79692 1.03222 1.00568 1.87770 1.20775 1.26665 1.95638 1.22645 0.92145 0.85619 1.02380 1.21653 0.93051 0.78618 1.06173 1.45355 1.31493 1.11619 1.19132 1.22866 0.97932 0.96616 0.98432 1.21812 1.04427 0.95951 0.98330 1.21983 1.01379 0.93847 0.99177 1.16499 0.79504 0.85044 0.79216 1.90826 1.42359 1.39564 1.67894 1.48346 1.42470 1.16164 1.26743 1.22102 0.92851 0.90520 0.95023 1.22242 0.95398 0.97934 0.96394 0.89439 1.21828 0.95202 1.00672 1.02290 1.22655 0.98383 0.95906 0.95127 0.89625 1.20631 0.92318 0.88606 0.94635 1.42386 1.05953 1.24862 1.64560 1.19154 0.92842 0.99569 1.25590 0.91265 1.24752 0.95396 0.99247 1.01586 1.69652 1.00540 1.37087 1.50739 0.86271 0.77206 0.82712 0.80000 1.21297 1.21727 1.21332 1.22413 1.02819 0.86322 0.88836 1.73631 1.22769 0.97729 1.15189 0.93767 0.93459 0.89083 0.92490 0.91168 0.87010 0.87894 0.80036 0.81859 0.91240 0.91378 0.92384 0.91513 0.93097 0.95919 0.95718 0.78237 0.93451 0.90960 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.27 16 2 O -0.39 -2.63 10.70 -35.23 -0.38 -3.01 16 3 C 0.05 0.31 6.05 37.16 0.22 0.53 16 4 C 0.13 0.69 6.77 -4.04 -0.03 0.67 16 5 N -0.29 -2.49 3.40 -61.33 -0.21 -2.70 16 6 C -0.02 -0.13 11.40 -17.17 -0.20 -0.33 16 7 C -0.18 -2.00 10.81 -39.37 -0.43 -2.43 16 8 C 0.00 -0.04 6.98 -82.77 -0.58 -0.62 16 9 C 0.61 10.41 7.86 -12.39 -0.10 10.32 16 10 O -0.53 -10.84 17.18 5.31 0.09 -10.75 16 11 N -0.60 -9.58 3.32 -171.53 -0.57 -10.15 16 12 C 0.12 1.51 5.12 -3.06 -0.02 1.49 16 13 C -0.10 -1.27 3.47 -88.79 -0.31 -1.58 16 14 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 15 C -0.14 -1.68 7.90 37.15 0.29 -1.39 16 16 C -0.10 -1.66 2.93 -88.35 -0.26 -1.92 16 17 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 18 C 0.17 3.28 4.54 -4.04 -0.02 3.26 16 19 N -0.73 -18.74 5.55 -59.91 -0.33 -19.07 16 20 C -0.24 -6.80 9.99 -15.06 -0.15 -6.96 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 23 N -0.93 -28.82 13.06 55.49 0.72 -28.09 16 24 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 28 C 0.12 2.06 6.01 -2.40 -0.01 2.05 16 29 N -0.26 -3.01 9.20 33.42 0.31 -2.70 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 35 H 0.11 0.33 8.04 -51.93 -0.42 -0.08 16 36 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.18 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.16 1.72 8.06 -52.49 -0.42 1.29 16 39 H 0.07 0.87 7.65 -51.93 -0.40 0.47 16 40 H 0.07 0.81 7.48 -51.93 -0.39 0.42 16 41 H 0.06 0.75 7.32 -51.93 -0.38 0.37 16 42 H 0.07 0.81 7.12 -51.93 -0.37 0.44 16 43 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.02 0.45 8.05 -51.93 -0.42 0.03 16 45 H 0.03 0.49 6.94 -51.93 -0.36 0.13 16 46 H 0.38 10.43 7.67 -40.82 -0.31 10.12 16 47 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 48 H 0.07 1.30 7.46 -51.93 -0.39 0.91 16 49 H 0.08 1.70 8.03 -51.93 -0.42 1.29 16 LS Contribution 400.86 15.07 6.04 6.04 Total: -1.00 -35.45 400.86 -7.95 -43.40 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -8.04 Total: 5.41 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -0.55 Total: 3.86 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: -0.08 Total: -62.72 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.29 Total: -13.76 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.45 -7.95 -43.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699962839.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.840 kcal (2) G-P(sol) polarization free energy of solvation -35.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds