Wall clock time and date at job start Tue Mar 31 2020 19:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99948 * 2 1 4 4 C 1.53006 * 109.47036 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.46995 * 180.02562 * 4 3 2 6 6 C 1.35035 * 124.88424 * 125.00443 * 5 4 3 7 7 C 1.35365 * 107.22963 * 179.97438 * 6 5 4 8 8 C 1.41500 * 105.50373 * 0.02562 * 7 6 5 9 9 C 1.47711 * 126.52041 * 180.02562 * 8 7 6 10 10 O 1.21569 * 119.99756 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00124 * 179.97438 * 9 8 7 12 12 C 1.47487 * 127.03602 * 0.02562 * 11 9 8 13 13 C 1.53997 * 107.08472 * 154.51681 * 12 11 9 14 14 H 1.09006 * 110.32424 * 242.41041 * 13 12 11 15 15 C 1.52994 * 110.32746 * 120.30200 * 13 12 11 16 16 C 1.54618 * 105.04398 * 1.30555 * 13 12 11 17 17 H 1.08996 * 110.73941 * 263.51037 * 16 13 12 18 18 C 1.52998 * 110.73558 * 140.37018 * 16 13 12 19 19 N 1.46510 * 109.46990 * 174.99964 * 18 16 13 20 20 C 1.36932 * 119.99755 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00693 * 359.97438 * 20 19 18 22 22 C 1.38813 * 119.99885 * 179.97438 * 20 19 18 23 23 N 1.31615 * 120.00157 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99854 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47231 * 89.99780 * 24 22 20 26 26 H 1.48500 * 109.47346 * 209.99923 * 24 22 20 27 27 H 1.48503 * 109.47457 * 330.00140 * 24 22 20 28 28 C 1.48116 * 127.03103 * 179.70649 * 11 9 8 29 29 N 1.28470 * 124.88530 * 304.69318 * 5 4 3 30 30 H 1.08999 * 109.47444 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47392 * 299.99575 * 1 2 3 32 32 H 1.09003 * 109.47182 * 59.99587 * 1 2 3 33 33 H 1.09001 * 109.46798 * 60.00190 * 3 2 1 34 34 H 1.08993 * 109.47318 * 299.99656 * 3 2 1 35 35 H 1.09001 * 109.46801 * 300.00369 * 4 3 2 36 36 H 1.09001 * 109.46998 * 59.99965 * 4 3 2 37 37 H 1.08002 * 126.38462 * 359.97438 * 6 5 4 38 38 H 1.07998 * 127.24571 * 179.97438 * 7 6 5 39 39 H 1.08997 * 109.91033 * 273.88398 * 12 11 9 40 40 H 1.09009 * 109.90664 * 34.95878 * 12 11 9 41 41 H 1.09005 * 109.47470 * 61.45040 * 15 13 12 42 42 H 1.09000 * 109.47656 * 181.45433 * 15 13 12 43 43 H 1.09004 * 109.46938 * 301.45615 * 15 13 12 44 44 H 1.09002 * 109.47068 * 294.99387 * 18 16 13 45 45 H 1.09002 * 109.47626 * 54.99869 * 18 16 13 46 46 H 0.96991 * 119.99721 * 359.97438 * 19 18 16 47 47 H 0.97010 * 119.99833 * 179.97438 * 23 22 20 48 48 H 1.09003 * 110.66212 * 337.76776 * 28 11 9 49 49 H 1.09005 * 110.66174 * 100.88684 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1313 2.5229 0.0013 6 6 5.0255 2.9698 0.9091 7 6 5.3356 4.2438 0.5730 8 6 4.5733 4.5256 -0.5854 9 6 4.5597 5.7944 -1.3416 10 8 5.2524 6.7254 -0.9792 11 7 3.7794 5.9199 -2.4333 12 6 2.8837 4.8983 -3.0072 13 6 1.7802 5.6460 -3.7785 14 1 0.8046 5.4402 -3.3381 15 6 1.7933 5.2387 -5.2532 16 6 2.1315 7.1444 -3.6298 17 1 1.5686 7.5934 -2.8115 18 6 1.8724 7.8940 -4.9382 19 7 2.0994 9.3268 -4.7333 20 6 1.9280 10.2025 -5.7719 21 1 1.6260 9.8370 -6.7423 22 6 2.1426 11.5601 -5.5777 23 7 1.9784 12.4018 -6.5761 24 14 2.6644 12.1925 -3.8992 25 1 4.1468 12.1987 -3.8115 26 1 2.1515 13.5730 -3.7090 27 1 2.1098 11.3084 -2.8428 28 6 3.6411 7.1142 -3.2984 29 7 3.8826 3.4383 -0.8651 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6887 1.8463 -0.8899 35 1 3.8567 0.6438 0.8909 36 1 3.8575 0.6435 -0.8891 37 1 5.4198 2.4142 1.7472 38 1 6.0200 4.9061 1.0822 39 1 3.4418 4.2553 -3.6877 40 1 2.4431 4.3005 -2.2093 41 1 1.5943 4.1702 -5.3368 42 1 1.0249 5.7944 -5.7905 43 1 2.7700 5.4610 -5.6829 44 1 2.5499 7.5253 -5.7084 45 1 0.8415 7.7308 -5.2525 46 1 2.3710 9.6550 -3.8619 47 1 2.1280 13.3506 -6.4403 48 1 3.9340 8.0153 -2.7597 49 1 4.2303 7.0002 -4.2084 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699962840.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:15 Heat of formation + Delta-G solvation = 27.670239 kcal Electronic energy + Delta-G solvation = -29350.253927 eV Core-core repulsion = 25315.407248 eV Total energy + Delta-G solvation = -4034.846679 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.98401 -39.96241 -38.58244 -37.91381 -34.81494 -34.37113 -32.89339 -31.32158 -31.08404 -30.11000 -29.17574 -27.11605 -26.54749 -25.66943 -24.40618 -23.19425 -22.10385 -21.76939 -21.33718 -19.44669 -19.18485 -17.94830 -17.47481 -17.08682 -16.81597 -16.55892 -16.24382 -15.77869 -15.45719 -15.22498 -14.77183 -14.59016 -14.28642 -14.01922 -13.79252 -13.66660 -13.32328 -13.12284 -12.85351 -12.59849 -12.53891 -12.37449 -12.24755 -12.20824 -11.95017 -11.86775 -11.76731 -11.26204 -10.98643 -10.86370 -10.50069 -10.41033 -10.35271 -10.23330 -10.07101 -9.98931 -9.57239 -9.54449 -9.38157 -8.84794 -8.59573 -7.18725 -5.72729 -3.08090 1.34685 1.82929 1.90472 2.95111 3.23749 3.36630 3.44192 3.48273 3.51888 3.92711 4.22505 4.29603 4.45760 4.54176 4.62357 4.64838 4.68249 4.76892 4.80243 4.89611 4.93751 5.00506 5.11998 5.14268 5.28352 5.36911 5.47374 5.50138 5.54127 5.59249 5.61582 5.74626 5.78513 5.90380 5.99784 6.04867 6.13049 6.18246 6.24841 6.32270 6.35248 6.42246 6.50404 6.67074 6.79002 7.50117 7.62618 8.03025 8.18745 8.46264 9.25417 9.98197 10.17636 11.45576 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015196 B = 0.002623 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.184368 B =10671.485594 C =11902.903007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.049 3.951 4 C 0.125 3.875 5 N -0.286 5.286 6 C -0.015 4.015 7 C -0.177 4.177 8 C -0.003 4.003 9 C 0.616 3.384 10 O -0.533 6.533 11 N -0.608 5.608 12 C 0.109 3.891 13 C -0.098 4.098 14 H 0.081 0.919 15 C -0.145 4.145 16 C -0.108 4.108 17 H 0.081 0.919 18 C 0.169 3.831 19 N -0.758 5.758 20 C -0.243 4.243 21 H 0.090 0.910 22 C 0.005 3.995 23 N -0.935 5.935 24 Si 0.882 3.118 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.277 1.277 28 C 0.114 3.886 29 N -0.258 5.258 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.183 0.817 38 H 0.164 0.836 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.034 0.966 45 H 0.032 0.968 46 H 0.361 0.639 47 H 0.259 0.741 48 H 0.085 0.915 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.467 -30.148 16.173 34.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.028 4.028 4 C 0.005 3.995 5 N -0.075 5.075 6 C -0.157 4.157 7 C -0.205 4.205 8 C -0.164 4.164 9 C 0.403 3.597 10 O -0.408 6.408 11 N -0.341 5.341 12 C -0.014 4.014 13 C -0.118 4.118 14 H 0.099 0.901 15 C -0.203 4.203 16 C -0.128 4.128 17 H 0.099 0.901 18 C 0.042 3.958 19 N -0.403 5.403 20 C -0.373 4.373 21 H 0.108 0.892 22 C -0.191 4.191 23 N -0.583 5.583 24 Si 0.713 3.287 25 H -0.209 1.209 26 H -0.218 1.218 27 H -0.203 1.203 28 C -0.008 4.008 29 N -0.094 5.094 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.130 0.870 36 H 0.121 0.879 37 H 0.200 0.800 38 H 0.182 0.818 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.052 0.948 45 H 0.050 0.950 46 H 0.193 0.807 47 H 0.069 0.931 48 H 0.103 0.897 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.140 -30.309 15.462 34.025 hybrid contribution 0.687 1.025 1.798 2.181 sum 0.827 -29.284 17.260 34.002 Atomic orbital electron populations 1.22808 0.79624 1.03259 1.00615 1.87769 1.20827 1.26595 1.95642 1.22644 0.92096 0.85690 1.02394 1.21669 0.93100 0.78550 1.06220 1.45385 1.31398 1.11607 1.19119 1.22878 0.97816 0.96613 0.98394 1.21808 1.04435 0.95956 0.98308 1.21952 1.01462 0.93736 0.99248 1.16472 0.79460 0.85021 0.78757 1.90822 1.42497 1.39489 1.68006 1.48626 1.42521 1.16583 1.26393 1.22341 0.90828 0.90610 0.97651 1.22046 0.98337 0.94768 0.96634 0.90095 1.21906 1.03028 1.00552 0.94781 1.22513 0.95233 0.94784 1.00283 0.90081 1.20696 0.98436 0.83952 0.92705 1.42775 1.84382 1.02259 1.10911 1.19033 1.39129 0.87729 0.91405 0.89200 1.24663 1.01643 0.95856 0.96947 1.69705 1.55818 1.02461 1.30280 0.86578 0.78803 0.78174 0.85186 1.20910 1.21764 1.20311 1.22542 0.96437 0.88021 0.93758 1.73596 1.22674 0.97765 1.15354 0.89050 0.93733 0.93428 0.92455 0.91201 0.86958 0.87852 0.79971 0.81843 0.91511 0.89605 0.92975 0.91287 0.92066 0.94793 0.95004 0.80675 0.93096 0.89657 0.90245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.53 10.70 -35.23 -0.38 -2.91 16 3 C 0.05 0.29 6.05 37.16 0.22 0.52 16 4 C 0.13 0.63 6.77 -4.04 -0.03 0.61 16 5 N -0.29 -2.33 3.40 -61.33 -0.21 -2.54 16 6 C -0.01 -0.11 11.40 -17.17 -0.20 -0.31 16 7 C -0.18 -1.90 10.81 -39.36 -0.43 -2.32 16 8 C 0.00 -0.05 6.99 -82.76 -0.58 -0.62 16 9 C 0.62 10.01 7.90 -12.39 -0.10 9.91 16 10 O -0.53 -10.39 17.13 5.31 0.09 -10.30 16 11 N -0.61 -9.13 3.29 -171.14 -0.56 -9.70 16 12 C 0.11 1.31 5.94 -2.98 -0.02 1.29 16 13 C -0.10 -1.18 3.52 -89.25 -0.31 -1.49 16 14 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 15 C -0.15 -1.61 7.79 37.15 0.29 -1.32 16 16 C -0.11 -1.68 2.98 -88.94 -0.27 -1.95 16 17 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 18 C 0.17 3.18 4.45 -4.04 -0.02 3.16 16 19 N -0.76 -18.16 5.33 -59.90 -0.32 -18.48 16 20 C -0.24 -6.95 10.47 -15.06 -0.16 -7.11 16 21 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 22 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 23 N -0.93 -29.79 13.97 55.49 0.78 -29.01 16 24 Si 0.88 22.87 27.73 -169.99 -4.71 18.16 16 25 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 27 H -0.28 -6.82 6.52 56.52 0.37 -6.45 16 28 C 0.11 1.86 6.44 -2.32 -0.01 1.85 16 29 N -0.26 -2.86 8.90 33.42 0.30 -2.56 16 30 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 35 H 0.11 0.29 8.04 -51.93 -0.42 -0.13 16 36 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.18 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.07 0.76 7.68 -51.93 -0.40 0.36 16 40 H 0.09 0.98 6.20 -51.92 -0.32 0.65 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.81 6.76 -51.93 -0.35 0.46 16 43 H 0.06 0.72 7.52 -51.93 -0.39 0.33 16 44 H 0.03 0.64 6.82 -51.93 -0.35 0.28 16 45 H 0.03 0.60 7.38 -51.93 -0.38 0.22 16 46 H 0.36 8.62 5.53 -40.82 -0.23 8.39 16 47 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 48 H 0.08 1.57 7.85 -51.93 -0.41 1.16 16 49 H 0.08 1.29 7.95 -51.93 -0.41 0.88 16 LS Contribution 396.65 15.07 5.98 5.98 Total: -1.00 -36.25 396.65 -7.53 -43.77 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.90 Total: 4.07 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -0.58 Total: 3.51 kcal Atomic # 7 Polarization: -62.27 SS G_CDS: -0.02 Total: -62.29 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.29 Total: -13.21 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.71 Total: 18.16 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.25 -7.53 -43.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699962840.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.444 kcal (2) G-P(sol) polarization free energy of solvation -36.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds