Wall clock time and date at job start Tue Mar 31 2020 19:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99948 * 2 1 4 4 C 1.53006 * 109.47036 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.46995 * 180.02562 * 4 3 2 6 6 C 1.35035 * 124.88424 * 125.00443 * 5 4 3 7 7 C 1.35365 * 107.22963 * 179.97438 * 6 5 4 8 8 C 1.41500 * 105.50373 * 0.02562 * 7 6 5 9 9 C 1.47711 * 126.52041 * 180.02562 * 8 7 6 10 10 O 1.21569 * 119.99756 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00124 * 179.97438 * 9 8 7 12 12 C 1.47487 * 127.03602 * 0.02562 * 11 9 8 13 13 C 1.53997 * 107.08472 * 154.51681 * 12 11 9 14 14 H 1.09006 * 110.32424 * 242.41041 * 13 12 11 15 15 C 1.52994 * 110.32746 * 120.30200 * 13 12 11 16 16 C 1.54618 * 105.04398 * 1.30555 * 13 12 11 17 17 H 1.08996 * 110.73941 * 263.51037 * 16 13 12 18 18 C 1.52998 * 110.73558 * 140.37018 * 16 13 12 19 19 N 1.46510 * 109.46990 * 174.99964 * 18 16 13 20 20 C 1.36932 * 119.99755 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00693 * 359.97438 * 20 19 18 22 22 C 1.38813 * 119.99885 * 179.97438 * 20 19 18 23 23 N 1.31615 * 120.00157 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99854 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47231 * 89.99780 * 24 22 20 26 26 H 1.48500 * 109.47346 * 209.99923 * 24 22 20 27 27 H 1.48503 * 109.47457 * 330.00140 * 24 22 20 28 28 C 1.48116 * 127.03103 * 179.70649 * 11 9 8 29 29 N 1.28470 * 124.88530 * 304.69318 * 5 4 3 30 30 H 1.08999 * 109.47444 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47392 * 299.99575 * 1 2 3 32 32 H 1.09003 * 109.47182 * 59.99587 * 1 2 3 33 33 H 1.09001 * 109.46798 * 60.00190 * 3 2 1 34 34 H 1.08993 * 109.47318 * 299.99656 * 3 2 1 35 35 H 1.09001 * 109.46801 * 300.00369 * 4 3 2 36 36 H 1.09001 * 109.46998 * 59.99965 * 4 3 2 37 37 H 1.08002 * 126.38462 * 359.97438 * 6 5 4 38 38 H 1.07998 * 127.24571 * 179.97438 * 7 6 5 39 39 H 1.08997 * 109.91033 * 273.88398 * 12 11 9 40 40 H 1.09009 * 109.90664 * 34.95878 * 12 11 9 41 41 H 1.09005 * 109.47470 * 61.45040 * 15 13 12 42 42 H 1.09000 * 109.47656 * 181.45433 * 15 13 12 43 43 H 1.09004 * 109.46938 * 301.45615 * 15 13 12 44 44 H 1.09002 * 109.47068 * 294.99387 * 18 16 13 45 45 H 1.09002 * 109.47626 * 54.99869 * 18 16 13 46 46 H 0.96991 * 119.99721 * 359.97438 * 19 18 16 47 47 H 0.97010 * 119.99833 * 179.97438 * 23 22 20 48 48 H 1.09003 * 110.66212 * 337.76776 * 28 11 9 49 49 H 1.09005 * 110.66174 * 100.88684 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1313 2.5229 0.0013 6 6 5.0255 2.9698 0.9091 7 6 5.3356 4.2438 0.5730 8 6 4.5733 4.5256 -0.5854 9 6 4.5597 5.7944 -1.3416 10 8 5.2524 6.7254 -0.9792 11 7 3.7794 5.9199 -2.4333 12 6 2.8837 4.8983 -3.0072 13 6 1.7802 5.6460 -3.7785 14 1 0.8046 5.4402 -3.3381 15 6 1.7933 5.2387 -5.2532 16 6 2.1315 7.1444 -3.6298 17 1 1.5686 7.5934 -2.8115 18 6 1.8724 7.8940 -4.9382 19 7 2.0994 9.3268 -4.7333 20 6 1.9280 10.2025 -5.7719 21 1 1.6260 9.8370 -6.7423 22 6 2.1426 11.5601 -5.5777 23 7 1.9784 12.4018 -6.5761 24 14 2.6644 12.1925 -3.8992 25 1 4.1468 12.1987 -3.8115 26 1 2.1515 13.5730 -3.7090 27 1 2.1098 11.3084 -2.8428 28 6 3.6411 7.1142 -3.2984 29 7 3.8826 3.4383 -0.8651 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6887 1.8463 -0.8899 35 1 3.8567 0.6438 0.8909 36 1 3.8575 0.6435 -0.8891 37 1 5.4198 2.4142 1.7472 38 1 6.0200 4.9061 1.0822 39 1 3.4418 4.2553 -3.6877 40 1 2.4431 4.3005 -2.2093 41 1 1.5943 4.1702 -5.3368 42 1 1.0249 5.7944 -5.7905 43 1 2.7700 5.4610 -5.6829 44 1 2.5499 7.5253 -5.7084 45 1 0.8415 7.7308 -5.2525 46 1 2.3710 9.6550 -3.8619 47 1 2.1280 13.3506 -6.4403 48 1 3.9340 8.0153 -2.7597 49 1 4.2303 7.0002 -4.2084 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699962840.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:14 Heat of formation + Delta-G solvation = 1.824495 kcal Electronic energy + Delta-G solvation = -29351.374682 eV Core-core repulsion = 25315.407248 eV Total energy + Delta-G solvation = -4035.967434 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.71159 -41.15440 -39.23896 -38.94188 -36.60255 -35.02651 -34.31979 -33.16529 -31.85528 -31.02719 -30.31782 -28.04546 -27.24518 -26.94763 -25.45024 -24.37912 -23.39110 -22.82382 -22.15801 -20.62890 -20.42420 -19.39156 -18.48561 -18.11030 -17.50796 -17.16662 -17.05157 -16.86694 -16.57479 -16.29955 -16.12102 -15.74279 -15.48142 -15.02991 -14.82240 -14.72063 -14.48328 -14.20057 -14.18643 -14.05612 -13.65157 -13.46523 -13.16385 -13.09572 -12.99518 -12.85940 -12.77426 -12.59399 -12.31552 -12.21002 -11.92630 -11.83076 -11.66762 -11.57268 -11.35321 -11.28594 -10.95532 -10.75847 -10.31935 -10.14005 -9.77154 -9.28927 -8.03831 -5.35970 0.44113 1.13680 1.29028 1.35904 1.38700 1.44188 1.87255 2.27584 2.46111 2.77526 3.22847 3.28324 3.42479 3.56243 3.70385 3.79026 3.84215 3.91637 3.97444 4.11949 4.17297 4.23164 4.31368 4.46912 4.48825 4.50078 4.52780 4.63771 4.66187 4.68137 4.71472 4.76314 4.78191 4.79344 4.86722 4.90964 4.97647 5.09159 5.19040 5.21118 5.34617 5.36408 5.52537 5.76269 5.80917 6.03009 6.20676 6.40723 6.74961 7.04128 7.07020 7.84201 8.01108 9.17619 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015196 B = 0.002623 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.184368 B =10671.485594 C =11902.903007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.052 3.948 4 C 0.122 3.878 5 N -0.276 5.276 6 C 0.013 3.987 7 C -0.203 4.203 8 C -0.036 4.036 9 C 0.608 3.392 10 O -0.581 6.581 11 N -0.609 5.609 12 C 0.115 3.885 13 C -0.087 4.087 14 H 0.102 0.898 15 C -0.144 4.144 16 C -0.099 4.099 17 H 0.075 0.925 18 C 0.169 3.831 19 N -0.763 5.763 20 C -0.228 4.228 21 H 0.064 0.936 22 C -0.061 4.061 23 N -0.981 5.981 24 Si 0.946 3.054 25 H -0.283 1.283 26 H -0.293 1.293 27 H -0.258 1.258 28 C 0.113 3.887 29 N -0.263 5.263 30 H 0.103 0.897 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.147 0.853 36 H 0.111 0.889 37 H 0.231 0.769 38 H 0.162 0.838 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.037 0.963 45 H 0.039 0.961 46 H 0.362 0.638 47 H 0.258 0.742 48 H 0.058 0.942 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.095 -33.884 18.424 38.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.026 4.026 4 C 0.003 3.997 5 N -0.066 5.066 6 C -0.129 4.129 7 C -0.231 4.231 8 C -0.195 4.195 9 C 0.397 3.603 10 O -0.459 6.459 11 N -0.341 5.341 12 C -0.007 4.007 13 C -0.106 4.106 14 H 0.120 0.880 15 C -0.201 4.201 16 C -0.119 4.119 17 H 0.093 0.907 18 C 0.044 3.956 19 N -0.408 5.408 20 C -0.359 4.359 21 H 0.082 0.918 22 C -0.252 4.252 23 N -0.632 5.632 24 Si 0.774 3.226 25 H -0.210 1.210 26 H -0.219 1.219 27 H -0.183 1.183 28 C -0.009 4.009 29 N -0.100 5.100 30 H 0.122 0.878 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.164 0.836 36 H 0.129 0.871 37 H 0.248 0.752 38 H 0.179 0.821 39 H 0.095 0.905 40 H 0.115 0.885 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.055 0.945 45 H 0.057 0.943 46 H 0.194 0.806 47 H 0.066 0.934 48 H 0.076 0.924 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.265 -34.124 17.714 38.448 hybrid contribution 0.758 1.990 1.056 2.377 sum 0.493 -32.134 18.770 37.218 Atomic orbital electron populations 1.22959 0.78788 1.04239 1.00913 1.87746 1.21816 1.26767 1.95679 1.22586 0.92670 0.85504 1.01825 1.21989 0.92452 0.76958 1.08345 1.45739 1.30742 1.11911 1.18205 1.23480 0.95837 0.95332 0.98297 1.21995 1.05153 0.97741 0.98221 1.21628 1.03981 0.93344 1.00545 1.17001 0.78713 0.85781 0.78770 1.90773 1.44448 1.41395 1.69326 1.48698 1.42695 1.16648 1.26044 1.22456 0.90311 0.89970 0.98006 1.22050 0.99297 0.91663 0.97628 0.88014 1.21894 1.02258 1.02294 0.93632 1.22351 0.94530 0.96955 0.98088 0.90655 1.20856 0.98657 0.81414 0.94711 1.42858 1.84218 1.03932 1.09787 1.19052 1.36944 0.88426 0.91476 0.91822 1.25401 1.02905 0.96299 1.00626 1.69861 1.58099 1.02672 1.32591 0.85541 0.78190 0.77582 0.81281 1.20954 1.21910 1.18259 1.22402 0.97022 0.87904 0.93587 1.73497 1.22540 0.97693 1.16279 0.87827 0.93218 0.93368 0.92498 0.92389 0.83559 0.87096 0.75244 0.82085 0.90481 0.88453 0.90206 0.91963 0.93039 0.94459 0.94343 0.80567 0.93357 0.92363 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 113.37 1.25 1.43 16 2 O -0.40 -4.10 10.70 -148.98 -1.59 -5.70 16 3 C 0.05 0.46 6.05 71.98 0.44 0.90 16 4 C 0.12 0.75 6.77 86.38 0.58 1.33 16 5 N -0.28 -3.58 3.40 -347.94 -1.18 -4.77 16 6 C 0.01 0.15 11.40 83.54 0.95 1.10 16 7 C -0.20 -4.09 10.81 22.41 0.24 -3.84 16 8 C -0.04 -0.94 6.99 42.46 0.30 -0.64 16 9 C 0.61 20.17 7.90 86.75 0.69 20.86 16 10 O -0.58 -23.71 17.13 -3.93 -0.07 -23.77 16 11 N -0.61 -18.24 3.29 -813.63 -2.68 -20.92 16 12 C 0.11 2.55 5.94 86.53 0.51 3.06 16 13 C -0.09 -1.89 3.52 -9.91 -0.03 -1.93 16 14 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 15 C -0.14 -2.85 7.79 71.98 0.56 -2.29 16 16 C -0.10 -3.01 2.98 -9.70 -0.03 -3.04 16 17 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 18 C 0.17 6.28 4.45 86.38 0.38 6.66 16 19 N -0.76 -36.58 5.33 -343.43 -1.83 -38.41 16 20 C -0.23 -13.24 10.47 84.03 0.88 -12.36 16 21 H 0.06 3.98 8.06 -2.91 -0.02 3.95 16 22 C -0.06 -3.68 5.50 84.86 0.47 -3.22 16 23 N -0.98 -64.16 13.97 21.65 0.30 -63.86 16 24 Si 0.95 48.00 27.73 68.60 1.90 49.90 16 25 H -0.28 -14.29 7.11 99.48 0.71 -13.59 16 26 H -0.29 -14.83 7.11 99.48 0.71 -14.12 16 27 H -0.26 -12.09 6.52 99.48 0.65 -11.44 16 28 C 0.11 3.75 6.44 86.61 0.56 4.31 16 29 N -0.26 -5.29 8.90 -48.17 -0.43 -5.72 16 30 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.06 0.65 8.09 -2.39 -0.02 0.63 16 35 H 0.15 -0.03 8.04 -2.39 -0.02 -0.05 16 36 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.23 0.24 8.06 -2.91 -0.02 0.21 16 38 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 39 H 0.08 1.59 7.68 -2.39 -0.02 1.57 16 40 H 0.10 1.99 6.20 -2.38 -0.01 1.97 16 41 H 0.08 1.17 8.14 -2.38 -0.02 1.16 16 42 H 0.06 1.34 6.76 -2.39 -0.02 1.32 16 43 H 0.05 1.13 7.52 -2.39 -0.02 1.11 16 44 H 0.04 1.39 6.82 -2.39 -0.02 1.37 16 45 H 0.04 1.41 7.38 -2.39 -0.02 1.39 16 46 H 0.36 17.17 5.53 -92.71 -0.51 16.66 16 47 H 0.26 16.07 8.31 -92.70 -0.77 15.30 16 48 H 0.06 2.23 7.85 -2.39 -0.02 2.21 16 49 H 0.08 2.54 7.95 -2.38 -0.02 2.53 16 Total: -1.00 -81.86 396.65 2.54 -79.32 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 0.38 Total: 21.58 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 7.74 Total: 12.33 kcal Atomic # 7 Polarization: -127.84 SS G_CDS: -5.82 Total: -133.66 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -1.66 Total: -29.47 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 1.90 Total: 49.90 kcal Total: -81.86 2.54 -79.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699962840.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.144 kcal (2) G-P(sol) polarization free energy of solvation -81.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds