Wall clock time and date at job start Tue Mar 31 2020 19:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47194 * 2 1 4 4 C 1.50692 * 109.47423 * 120.00446 * 2 1 3 5 5 O 1.21283 * 120.00381 * 119.99841 * 4 2 1 6 6 N 1.34777 * 120.00145 * 300.00116 * 4 2 1 7 7 C 1.46498 * 120.00224 * 184.91526 * 6 4 2 8 8 C 1.52999 * 109.50330 * 57.35217 * 7 6 4 9 9 O 1.42897 * 109.46754 * 55.40286 * 8 7 6 10 10 C 1.53046 * 109.49219 * 297.28675 * 7 6 4 11 11 C 1.53034 * 109.54355 * 301.38365 * 10 7 6 12 12 C 1.53191 * 109.31088 * 298.63786 * 11 10 7 13 13 N 1.46921 * 108.77797 * 54.63370 * 12 11 10 14 14 C 1.36935 * 120.63130 * 126.41693 * 13 12 11 15 15 H 1.08004 * 120.00054 * 332.77379 * 14 13 12 16 16 C 1.38817 * 120.00309 * 152.78142 * 14 13 12 17 17 N 1.31613 * 120.00168 * 159.55469 * 16 14 13 18 18 Si 1.86807 * 119.99439 * 339.55259 * 16 14 13 19 19 H 1.48500 * 109.46765 * 93.72802 * 18 16 14 20 20 H 1.48500 * 109.47001 * 213.72565 * 18 16 14 21 21 H 1.48491 * 109.47373 * 333.72609 * 18 16 14 22 22 C 1.46925 * 118.73595 * 306.38663 * 13 12 11 23 23 C 1.50709 * 109.46795 * 240.00289 * 2 1 3 24 24 C 1.39867 * 126.03947 * 300.02462 * 23 2 1 25 25 N 1.30838 * 108.20090 * 179.97438 * 24 23 2 26 26 N 1.40086 * 108.20586 * 0.02562 * 25 24 23 27 27 C 1.46498 * 126.03484 * 179.97438 * 26 25 24 28 28 C 1.34953 * 107.92395 * 359.75568 * 26 25 24 29 29 H 1.09000 * 109.47309 * 59.99651 * 1 2 3 30 30 H 1.08995 * 109.47194 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46600 * 299.99654 * 1 2 3 32 32 H 0.97001 * 119.99509 * 4.90684 * 6 4 2 33 33 H 1.09004 * 109.47166 * 175.40434 * 8 7 6 34 34 H 1.09002 * 109.46879 * 295.40633 * 8 7 6 35 35 H 0.96699 * 114.00076 * 179.97438 * 9 8 7 36 36 H 1.08998 * 109.45934 * 61.40792 * 10 7 6 37 37 H 1.09000 * 109.45798 * 181.36306 * 10 7 6 38 38 H 1.09005 * 109.49854 * 58.58530 * 11 10 7 39 39 H 1.08998 * 109.50232 * 178.65106 * 11 10 7 40 40 H 1.09002 * 109.58679 * 174.41851 * 12 11 10 41 41 H 1.09000 * 109.58399 * 294.69946 * 12 11 10 42 42 H 0.97000 * 119.99794 * 179.97438 * 17 16 14 43 43 H 1.08997 * 109.59204 * 293.82487 * 22 13 12 44 44 H 1.09010 * 109.58558 * 173.39599 * 22 13 12 45 45 H 1.07994 * 125.89817 * 359.95970 * 24 23 2 46 46 H 1.09003 * 109.47185 * 89.97787 * 27 26 25 47 47 H 1.09008 * 109.46752 * 209.97263 * 27 26 25 48 48 H 1.08994 * 109.47232 * 329.97079 * 27 26 25 49 49 H 1.08000 * 126.12125 * 180.24090 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 2.7296 -1.6965 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 2.2815 -0.8746 3.6486 8 6 3.8084 -0.8149 3.5716 9 8 4.2235 0.5405 3.3910 10 6 1.8307 -2.3350 3.7284 11 6 0.3023 -2.3973 3.7724 12 6 -0.1987 -1.6676 5.0227 13 7 0.3500 -0.3047 5.0267 14 6 -0.4768 0.7799 5.1490 15 1 -1.5014 0.7186 4.8129 16 6 0.0019 1.9585 5.7048 17 7 -0.6175 3.0958 5.4703 18 14 1.5252 1.9300 6.7857 19 1 2.7245 2.2174 5.9584 20 1 1.3980 2.9603 7.8476 21 1 1.6641 0.5900 7.4102 22 6 1.8029 -0.1278 4.8977 23 6 2.0323 -0.7104 -1.2306 24 6 1.7730 -2.0406 -1.5763 25 7 2.3767 -2.2936 -2.7092 26 7 3.0407 -1.1307 -3.1204 27 6 3.8404 -0.9800 -4.3386 28 6 2.8096 -0.1724 -2.1987 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.0921 0.4947 2.5448 33 1 4.2343 -1.2053 4.4959 34 1 4.1535 -1.4158 2.7303 35 1 5.1821 0.6539 3.3340 36 1 2.1911 -2.8746 2.8526 37 1 2.2389 -2.7922 4.6298 38 1 -0.1071 -1.9181 2.8830 39 1 -0.0187 -3.4384 3.8050 40 1 -1.2877 -1.6230 5.0081 41 1 0.1332 -2.2001 5.9141 42 1 -0.2832 3.9193 5.8590 43 1 2.3001 -0.5332 5.7788 44 1 2.0346 0.9329 4.8003 45 1 1.1775 -2.7385 -1.0064 46 1 3.1999 -0.6458 -5.1548 47 1 4.6262 -0.2438 -4.1686 48 1 4.2903 -1.9381 -4.5987 49 1 3.1805 0.8414 -2.2277 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700005086.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:50 Heat of formation + Delta-G solvation = 23.663683 kcal Electronic energy + Delta-G solvation = -31489.580864 eV Core-core repulsion = 27454.560448 eV Total energy + Delta-G solvation = -4035.020416 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.25304 -39.98857 -37.66194 -36.08308 -34.28727 -33.74026 -32.79491 -32.26362 -30.69872 -30.15716 -29.14470 -26.50971 -25.52813 -25.26780 -24.20527 -22.47383 -21.55092 -21.05149 -20.37004 -19.49952 -18.64697 -17.33637 -16.95254 -16.74838 -16.37122 -15.55446 -15.38180 -14.94129 -14.83699 -14.43880 -14.11552 -14.06934 -13.82313 -13.58471 -13.32562 -13.17185 -13.06746 -12.89008 -12.69126 -12.62592 -12.40216 -12.12256 -11.97065 -11.76741 -11.52866 -11.49460 -11.37078 -11.18843 -10.67230 -10.45605 -10.42206 -10.24617 -10.01746 -9.78644 -9.67543 -9.46379 -9.35600 -8.97971 -8.61635 -8.36433 -8.28635 -6.99925 -5.98014 -3.34148 1.91907 2.52675 2.87760 3.18007 3.37469 3.49475 3.50491 3.79672 4.44553 4.51263 4.53522 4.80593 4.91514 4.94149 5.00246 5.06721 5.18114 5.25859 5.33130 5.36993 5.46903 5.47421 5.59090 5.62747 5.68700 5.78431 5.80324 5.85497 5.93780 6.06360 6.14078 6.20050 6.23436 6.28379 6.36896 6.39601 6.42656 6.59742 6.66774 6.72816 6.78192 6.94279 7.00817 7.17774 7.75569 7.90323 7.93238 8.23275 8.30199 8.82393 8.91158 9.69361 10.07297 11.17290 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016525 B = 0.003673 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.037400 B = 7621.665764 C = 7671.051435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.032 4.032 3 H 0.097 0.903 4 C 0.522 3.478 5 O -0.550 6.550 6 N -0.689 5.689 7 C 0.168 3.832 8 C 0.064 3.936 9 O -0.562 6.562 10 C -0.121 4.121 11 C -0.128 4.128 12 C 0.146 3.854 13 N -0.604 5.604 14 C -0.263 4.263 15 H 0.087 0.913 16 C 0.028 3.972 17 N -0.905 5.905 18 Si 0.874 3.126 19 H -0.281 1.281 20 H -0.305 1.305 21 H -0.272 1.272 22 C 0.128 3.872 23 C -0.204 4.204 24 C 0.083 3.917 25 N -0.306 5.306 26 N -0.383 5.383 27 C 0.106 3.894 28 C 0.054 3.946 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.411 0.589 33 H 0.043 0.957 34 H 0.065 0.935 35 H 0.369 0.631 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.021 0.979 42 H 0.263 0.737 43 H 0.035 0.965 44 H 0.087 0.913 45 H 0.177 0.823 46 H 0.071 0.929 47 H 0.084 0.916 48 H 0.086 0.914 49 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.280 -6.603 -14.124 17.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.055 4.055 3 H 0.115 0.885 4 C 0.308 3.692 5 O -0.429 6.429 6 N -0.340 5.340 7 C 0.080 3.920 8 C -0.016 4.016 9 O -0.366 6.366 10 C -0.159 4.159 11 C -0.167 4.167 12 C 0.020 3.980 13 N -0.327 5.327 14 C -0.391 4.391 15 H 0.105 0.895 16 C -0.172 4.172 17 N -0.547 5.547 18 Si 0.704 3.296 19 H -0.208 1.208 20 H -0.233 1.233 21 H -0.197 1.197 22 C 0.002 3.998 23 C -0.215 4.215 24 C -0.103 4.103 25 N -0.127 5.127 26 N -0.166 5.166 27 C -0.036 4.036 28 C -0.092 4.092 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.248 0.752 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.214 0.786 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.039 0.961 42 H 0.072 0.928 43 H 0.053 0.947 44 H 0.105 0.895 45 H 0.194 0.806 46 H 0.089 0.911 47 H 0.102 0.898 48 H 0.104 0.896 49 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 8.410 -7.859 -15.162 19.036 hybrid contribution 1.199 1.056 1.425 2.141 sum 9.609 -6.803 -13.737 18.091 Atomic orbital electron populations 1.21762 0.92364 1.02673 1.02915 1.19533 0.97116 0.99250 0.89593 0.88461 1.20374 0.80094 0.84332 0.84405 1.90570 1.39154 1.26276 1.86857 1.45808 1.47480 1.36541 1.04130 1.20863 0.89812 0.93960 0.87405 1.22648 0.95425 0.83545 0.99937 1.86560 1.26685 1.26841 1.96465 1.21763 0.96999 0.94990 1.02182 1.21903 0.94963 0.99312 1.00563 1.20986 0.97638 0.85341 0.94036 1.44364 1.01234 1.02100 1.84985 1.18904 0.95906 0.88869 1.35409 0.89494 1.25259 0.97626 0.95538 0.98728 1.69818 1.41828 0.97764 1.45333 0.87067 0.83905 0.77107 0.81488 1.20822 1.23300 1.19748 1.21581 0.85526 1.00131 0.92578 1.19494 1.07930 0.95318 0.98802 1.23584 0.98116 0.95716 0.92876 1.77326 1.13921 1.05795 1.15707 1.48325 1.40701 1.08361 1.19189 1.21765 0.94275 1.03818 0.83741 1.22219 1.00313 0.95576 0.91069 0.91871 0.92259 0.91063 0.75238 0.93917 0.91656 0.78555 0.90390 0.92265 0.91841 0.92788 0.91928 0.96114 0.92754 0.94721 0.89539 0.80569 0.91092 0.89777 0.89566 0.81239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.98 37.16 0.33 -1.41 16 2 C -0.03 -0.43 3.10 -92.92 -0.29 -0.72 16 3 H 0.10 1.21 8.11 -51.93 -0.42 0.79 16 4 C 0.52 8.48 6.52 -10.99 -0.07 8.40 16 5 O -0.55 -9.98 11.68 5.56 0.06 -9.91 16 6 N -0.69 -12.01 3.88 -47.50 -0.18 -12.19 16 7 C 0.17 3.03 0.45 -131.70 -0.06 2.97 16 8 C 0.06 1.06 5.61 37.16 0.21 1.26 16 9 O -0.56 -9.37 13.06 -35.23 -0.46 -9.83 16 10 C -0.12 -2.02 4.51 -26.69 -0.12 -2.14 16 11 C -0.13 -2.13 5.93 -26.62 -0.16 -2.29 16 12 C 0.15 2.78 6.52 -3.71 -0.02 2.75 16 13 N -0.60 -13.52 2.64 -172.32 -0.46 -13.97 16 14 C -0.26 -6.90 10.04 -15.06 -0.15 -7.05 16 15 H 0.09 2.44 8.06 -52.48 -0.42 2.01 16 16 C 0.03 0.77 5.24 -17.43 -0.09 0.68 16 17 N -0.90 -26.59 13.97 55.49 0.78 -25.81 16 18 Si 0.87 21.94 24.34 -169.99 -4.14 17.81 16 19 H -0.28 -6.97 6.65 56.52 0.38 -6.60 16 20 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 21 H -0.27 -6.76 6.55 56.52 0.37 -6.39 16 22 C 0.13 2.73 2.74 -3.71 -0.01 2.72 16 23 C -0.20 -2.75 4.36 -105.05 -0.46 -3.21 16 24 C 0.08 1.21 10.77 -17.37 -0.19 1.02 16 25 N -0.31 -4.51 12.58 30.62 0.39 -4.12 16 26 N -0.38 -4.58 4.01 -68.16 -0.27 -4.86 16 27 C 0.11 0.75 11.47 59.85 0.69 1.44 16 28 C 0.05 0.63 11.38 -17.22 -0.20 0.43 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.74 8.02 -51.93 -0.42 0.32 16 31 H 0.07 0.96 7.46 -51.93 -0.39 0.57 16 32 H 0.41 7.73 7.72 -40.82 -0.31 7.41 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 1.11 6.30 -51.93 -0.33 0.78 16 35 H 0.37 4.33 9.12 45.56 0.42 4.75 16 36 H 0.08 1.34 6.24 -51.93 -0.32 1.02 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 1.10 7.53 -51.93 -0.39 0.71 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.06 1.19 7.93 -51.93 -0.41 0.77 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.04 0.75 7.03 -51.93 -0.37 0.39 16 44 H 0.09 2.07 4.31 -51.92 -0.22 1.84 16 45 H 0.18 2.41 8.06 -52.49 -0.42 1.99 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 48 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 381.49 15.07 5.75 5.75 Total: -1.00 -33.66 381.49 -6.13 -39.79 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -7.01 Total: 12.49 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -0.59 Total: 4.87 kcal Atomic # 7 Polarization: -61.20 SS G_CDS: 0.25 Total: -60.96 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.40 Total: -19.75 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.14 Total: 17.81 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.66 -6.13 -39.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700005086.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.456 kcal (2) G-P(sol) polarization free energy of solvation -33.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds