Wall clock time and date at job start Tue Mar 31 2020 19:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47034 * 2 1 4 4 C 1.50696 * 109.47494 * 239.99633 * 2 1 3 5 5 O 1.21281 * 120.00431 * 239.99754 * 4 2 1 6 6 N 1.34783 * 120.00010 * 59.99941 * 4 2 1 7 7 C 1.46496 * 120.00213 * 185.25778 * 6 4 2 8 8 C 1.52999 * 109.49779 * 54.61282 * 7 6 4 9 9 O 1.42896 * 109.47271 * 54.65348 * 8 7 6 10 10 C 1.53041 * 109.49579 * 294.54935 * 7 6 4 11 11 C 1.53039 * 109.53928 * 301.38172 * 10 7 6 12 12 C 1.53188 * 109.33827 * 298.62120 * 11 10 7 13 13 N 1.46986 * 108.74359 * 54.61887 * 12 11 10 14 14 C 1.36936 * 120.61728 * 126.38422 * 13 12 11 15 15 H 1.08007 * 120.00123 * 329.08953 * 14 13 12 16 16 C 1.38815 * 120.00138 * 149.08280 * 14 13 12 17 17 N 1.31615 * 119.99803 * 347.87624 * 16 14 13 18 18 Si 1.86801 * 120.00001 * 167.87534 * 16 14 13 19 19 H 1.48497 * 109.47343 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47108 * 120.00442 * 18 16 14 21 21 H 1.48507 * 109.46814 * 240.00262 * 18 16 14 22 22 C 1.46934 * 118.75714 * 306.41505 * 13 12 11 23 23 C 1.50697 * 109.47367 * 119.99508 * 2 1 3 24 24 C 1.39871 * 126.03818 * 60.02527 * 23 2 1 25 25 N 1.30841 * 108.20356 * 179.97438 * 24 23 2 26 26 N 1.40087 * 108.20626 * 0.02562 * 25 24 23 27 27 C 1.46492 * 126.04227 * 179.97438 * 26 25 24 28 28 C 1.34955 * 107.92393 * 359.75664 * 26 25 24 29 29 H 1.08996 * 109.47254 * 60.00747 * 1 2 3 30 30 H 1.09004 * 109.46533 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47637 * 300.00472 * 1 2 3 32 32 H 0.96999 * 119.99796 * 5.25181 * 6 4 2 33 33 H 1.09000 * 109.46983 * 174.65171 * 8 7 6 34 34 H 1.08995 * 109.47262 * 294.64936 * 8 7 6 35 35 H 0.96699 * 114.00614 * 179.97438 * 9 8 7 36 36 H 1.09003 * 109.46221 * 181.35686 * 10 7 6 37 37 H 1.09003 * 109.45097 * 61.39712 * 10 7 6 38 38 H 1.09003 * 109.49793 * 58.58411 * 11 10 7 39 39 H 1.09004 * 109.49722 * 178.64890 * 11 10 7 40 40 H 1.09005 * 109.58739 * 174.44417 * 12 11 10 41 41 H 1.09009 * 109.58531 * 294.85819 * 12 11 10 42 42 H 0.97006 * 119.99971 * 179.97438 * 17 16 14 43 43 H 1.09004 * 109.57822 * 293.81910 * 22 13 12 44 44 H 1.08998 * 109.58965 * 173.39541 * 22 13 12 45 45 H 1.07997 * 125.90208 * 0.02562 * 24 23 2 46 46 H 1.08997 * 109.46939 * 89.97367 * 27 26 25 47 47 H 1.08993 * 109.47692 * 209.97771 * 27 26 25 48 48 H 1.09008 * 109.46771 * 329.97668 * 27 26 25 49 49 H 1.08000 * 126.13126 * 180.24466 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 8 2.7297 -1.6965 -1.1191 6 7 1.7068 -0.2501 -2.4546 7 6 2.0975 -1.0038 -3.6484 8 6 1.5827 -2.4403 -3.5365 9 8 0.1734 -2.4243 -3.3014 10 6 3.6231 -1.0158 -3.7684 11 6 4.1417 0.4219 -3.8473 12 6 3.5647 1.1015 -5.0930 13 7 2.0996 0.9890 -5.0567 14 6 1.3115 2.1026 -5.1737 15 1 1.6643 3.0550 -4.8062 16 6 0.0590 2.0076 -5.7647 17 7 -0.2772 0.9184 -6.4226 18 14 -1.1491 3.4256 -5.6262 19 1 -0.5332 4.5259 -4.8418 20 1 -1.4918 3.9183 -6.9844 21 1 -2.3826 2.9600 -4.9426 22 6 1.4967 -0.3408 -4.8919 23 6 2.0324 -0.7103 1.2305 24 6 1.7739 -2.0408 1.5757 25 7 2.3784 -2.2940 2.7082 26 7 3.0411 -1.1307 3.1203 27 6 3.8401 -0.9796 4.3388 28 6 2.8173 -0.1750 2.1941 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.2138 0.5803 -2.5451 33 1 1.7903 -2.9739 -4.4641 34 1 2.0836 -2.9423 -2.7088 35 1 -0.2219 -3.3031 -3.2199 36 1 3.9124 -1.5562 -4.6697 37 1 4.0520 -1.5092 -2.8960 38 1 3.8317 0.9698 -2.9574 39 1 5.2300 0.4133 -3.9085 40 1 3.8511 2.1533 -5.1012 41 1 3.9469 0.6098 -5.9877 42 1 -1.1526 0.8519 -6.8353 43 1 1.7103 -0.9501 -5.7701 44 1 0.4185 -0.2404 -4.7676 45 1 1.1790 -2.7390 1.0056 46 1 4.8775 -1.2387 4.1274 47 1 3.7865 0.0533 4.6828 48 1 3.4509 -1.6411 5.1129 49 1 3.1953 0.8364 2.2185 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700005087.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:55 Heat of formation + Delta-G solvation = 17.159617 kcal Electronic energy + Delta-G solvation = -31360.784222 eV Core-core repulsion = 27325.481769 eV Total energy + Delta-G solvation = -4035.302454 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.22394 -39.78164 -37.42341 -35.81777 -34.23789 -33.61401 -32.76959 -32.18912 -30.18539 -29.74809 -29.07593 -26.49344 -25.40000 -25.00861 -24.14054 -22.18951 -21.39038 -21.02091 -20.37441 -19.33785 -18.47703 -17.12482 -16.72823 -16.67081 -16.22065 -15.40035 -15.31187 -14.84683 -14.59380 -14.27813 -14.02678 -13.97421 -13.78031 -13.30471 -13.23780 -13.01052 -12.88170 -12.81865 -12.60708 -12.43294 -12.27382 -11.91894 -11.86344 -11.54073 -11.36841 -11.27743 -11.07431 -10.92235 -10.73985 -10.44043 -10.38787 -10.16918 -9.94765 -9.77160 -9.54881 -9.47141 -9.32099 -8.77446 -8.52185 -8.27912 -8.20323 -6.64489 -5.80442 -3.28511 1.93637 2.54445 2.90627 3.26786 3.35128 3.43139 3.44615 3.94656 4.45893 4.46566 4.75907 4.81942 4.96091 5.03077 5.11814 5.19597 5.32439 5.34567 5.43770 5.45802 5.57038 5.67064 5.77811 5.80243 5.83149 5.90261 5.93593 6.03699 6.08009 6.17057 6.24899 6.38807 6.40571 6.44744 6.55289 6.56807 6.72828 6.74643 6.86160 7.02260 7.02765 7.14979 7.42992 7.68671 7.77340 7.78756 8.13916 8.35999 8.45727 8.94402 9.19032 9.80984 10.39889 11.26987 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014356 B = 0.003680 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.907122 B = 7606.847374 C = 8024.594796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.033 4.033 3 H 0.094 0.906 4 C 0.519 3.481 5 O -0.551 6.551 6 N -0.686 5.686 7 C 0.158 3.842 8 C 0.069 3.931 9 O -0.558 6.558 10 C -0.119 4.119 11 C -0.127 4.127 12 C 0.142 3.858 13 N -0.591 5.591 14 C -0.258 4.258 15 H 0.065 0.935 16 C 0.008 3.992 17 N -0.898 5.898 18 Si 0.901 3.099 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.288 1.288 22 C 0.176 3.824 23 C -0.203 4.203 24 C 0.084 3.916 25 N -0.307 5.307 26 N -0.383 5.383 27 C 0.106 3.894 28 C 0.053 3.947 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.407 0.593 33 H 0.041 0.959 34 H 0.061 0.939 35 H 0.366 0.634 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.047 0.953 40 H 0.052 0.948 41 H 0.016 0.984 42 H 0.254 0.746 43 H 0.028 0.972 44 H 0.104 0.896 45 H 0.177 0.823 46 H 0.071 0.929 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.017 -3.137 15.739 16.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.056 4.056 3 H 0.112 0.888 4 C 0.305 3.695 5 O -0.430 6.430 6 N -0.336 5.336 7 C 0.070 3.930 8 C -0.010 4.010 9 O -0.362 6.362 10 C -0.157 4.157 11 C -0.166 4.166 12 C 0.016 3.984 13 N -0.313 5.313 14 C -0.388 4.388 15 H 0.083 0.917 16 C -0.192 4.192 17 N -0.541 5.541 18 Si 0.731 3.269 19 H -0.203 1.203 20 H -0.218 1.218 21 H -0.215 1.215 22 C 0.050 3.950 23 C -0.215 4.215 24 C -0.102 4.102 25 N -0.128 5.128 26 N -0.166 5.166 27 C -0.036 4.036 28 C -0.093 4.093 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.242 0.758 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.211 0.789 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.034 0.966 42 H 0.064 0.936 43 H 0.046 0.954 44 H 0.122 0.878 45 H 0.194 0.806 46 H 0.089 0.911 47 H 0.102 0.898 48 H 0.104 0.896 49 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 5.778 -4.047 16.703 18.131 hybrid contribution -0.973 1.083 -0.777 1.650 sum 4.805 -2.964 15.926 16.897 Atomic orbital electron populations 1.21709 0.92421 1.02780 1.02368 1.19538 0.97061 0.99130 0.89873 0.88793 1.20351 0.79952 0.84757 0.84471 1.90569 1.38296 1.27262 1.86845 1.45812 1.56849 1.26588 1.04309 1.21155 0.93930 0.89648 0.88244 1.22575 0.81636 0.97509 0.99325 1.86566 1.21621 1.32464 1.95500 1.21727 0.94891 0.97613 1.01511 1.21905 0.98165 0.96015 1.00517 1.20986 0.85870 0.97866 0.93671 1.44042 0.99354 1.03605 1.84316 1.19186 0.97892 0.88848 1.32867 0.91709 1.25155 0.99816 0.97185 0.97001 1.69977 1.20904 1.27395 1.35857 0.86253 0.81336 0.81946 0.77387 1.20255 1.21761 1.21477 1.21018 0.99800 0.84778 0.89440 1.19502 1.07653 0.95407 0.98912 1.23579 0.98020 0.95672 0.92953 1.77325 1.13966 1.05680 1.15823 1.48320 1.40762 1.08514 1.18999 1.21761 0.94589 1.03186 0.84067 1.22215 1.00212 0.95718 0.91115 0.91410 0.92122 0.92164 0.75765 0.94129 0.92099 0.78932 0.92374 0.91356 0.92471 0.93383 0.92941 0.96582 0.93563 0.95400 0.87836 0.80603 0.91088 0.89770 0.89588 0.81266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.99 37.16 0.33 -1.36 16 2 C -0.03 -0.45 3.08 -92.93 -0.29 -0.74 16 3 H 0.09 1.13 8.11 -51.93 -0.42 0.71 16 4 C 0.52 8.66 6.52 -10.98 -0.07 8.59 16 5 O -0.55 -10.42 11.70 5.56 0.07 -10.35 16 6 N -0.69 -12.23 3.80 -47.50 -0.18 -12.41 16 7 C 0.16 3.01 0.45 -131.70 -0.06 2.95 16 8 C 0.07 1.21 5.53 37.16 0.21 1.42 16 9 O -0.56 -9.66 13.08 -35.23 -0.46 -10.12 16 10 C -0.12 -2.16 4.56 -26.69 -0.12 -2.28 16 11 C -0.13 -2.27 5.93 -26.61 -0.16 -2.43 16 12 C 0.14 2.92 6.52 -3.68 -0.02 2.90 16 13 N -0.59 -13.93 2.83 -172.26 -0.49 -14.41 16 14 C -0.26 -6.64 9.58 -15.06 -0.14 -6.79 16 15 H 0.07 1.65 7.86 -52.48 -0.41 1.23 16 16 C 0.01 0.21 5.02 -17.43 -0.09 0.12 16 17 N -0.90 -25.08 11.10 55.49 0.62 -24.47 16 18 Si 0.90 20.78 29.57 -169.99 -5.03 15.76 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 C 0.18 4.02 3.83 -3.71 -0.01 4.01 16 23 C -0.20 -2.78 4.37 -105.05 -0.46 -3.24 16 24 C 0.08 1.24 10.77 -17.36 -0.19 1.05 16 25 N -0.31 -4.58 12.58 30.62 0.39 -4.19 16 26 N -0.38 -4.65 4.01 -68.17 -0.27 -4.92 16 27 C 0.11 0.76 11.47 59.84 0.69 1.45 16 28 C 0.05 0.63 11.38 -17.22 -0.20 0.43 16 29 H 0.07 0.90 7.69 -51.93 -0.40 0.50 16 30 H 0.06 0.79 8.02 -51.93 -0.42 0.37 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.41 7.62 7.99 -40.82 -0.33 7.29 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 1.10 6.16 -51.93 -0.32 0.78 16 35 H 0.37 4.59 9.12 45.56 0.42 5.01 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 1.28 6.43 -51.93 -0.33 0.95 16 38 H 0.06 1.05 7.53 -51.93 -0.39 0.66 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 1.05 7.94 -51.93 -0.41 0.64 16 41 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 42 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.10 2.70 5.97 -51.93 -0.31 2.39 16 45 H 0.18 2.47 8.06 -52.49 -0.42 2.05 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.09 0.57 8.14 -51.92 -0.42 0.14 16 49 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 388.50 15.07 5.85 5.85 Total: -1.00 -32.62 388.50 -7.20 -39.82 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -7.11 Total: 13.37 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -0.58 Total: 6.08 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: 0.06 Total: -60.41 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.40 Total: -20.48 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.62 -7.20 -39.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700005087.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.980 kcal (2) G-P(sol) polarization free energy of solvation -32.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds