Wall clock time and date at job start Tue Mar 31 2020 19:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47034 * 2 1 4 4 C 1.50696 * 109.47494 * 239.99633 * 2 1 3 5 5 O 1.21281 * 120.00431 * 239.99754 * 4 2 1 6 6 N 1.34783 * 120.00010 * 59.99941 * 4 2 1 7 7 C 1.46496 * 120.00213 * 185.25778 * 6 4 2 8 8 C 1.52999 * 109.49779 * 54.61282 * 7 6 4 9 9 O 1.42896 * 109.47271 * 54.65348 * 8 7 6 10 10 C 1.53041 * 109.49579 * 294.54935 * 7 6 4 11 11 C 1.53039 * 109.53928 * 301.38172 * 10 7 6 12 12 C 1.53188 * 109.33827 * 298.62120 * 11 10 7 13 13 N 1.46986 * 108.74359 * 54.61887 * 12 11 10 14 14 C 1.36936 * 120.61728 * 126.38422 * 13 12 11 15 15 H 1.08007 * 120.00123 * 329.08953 * 14 13 12 16 16 C 1.38815 * 120.00138 * 149.08280 * 14 13 12 17 17 N 1.31615 * 119.99803 * 347.87624 * 16 14 13 18 18 Si 1.86801 * 120.00001 * 167.87534 * 16 14 13 19 19 H 1.48497 * 109.47343 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47108 * 120.00442 * 18 16 14 21 21 H 1.48507 * 109.46814 * 240.00262 * 18 16 14 22 22 C 1.46934 * 118.75714 * 306.41505 * 13 12 11 23 23 C 1.50697 * 109.47367 * 119.99508 * 2 1 3 24 24 C 1.39871 * 126.03818 * 60.02527 * 23 2 1 25 25 N 1.30841 * 108.20356 * 179.97438 * 24 23 2 26 26 N 1.40087 * 108.20626 * 0.02562 * 25 24 23 27 27 C 1.46492 * 126.04227 * 179.97438 * 26 25 24 28 28 C 1.34955 * 107.92393 * 359.75664 * 26 25 24 29 29 H 1.08996 * 109.47254 * 60.00747 * 1 2 3 30 30 H 1.09004 * 109.46533 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47637 * 300.00472 * 1 2 3 32 32 H 0.96999 * 119.99796 * 5.25181 * 6 4 2 33 33 H 1.09000 * 109.46983 * 174.65171 * 8 7 6 34 34 H 1.08995 * 109.47262 * 294.64936 * 8 7 6 35 35 H 0.96699 * 114.00614 * 179.97438 * 9 8 7 36 36 H 1.09003 * 109.46221 * 181.35686 * 10 7 6 37 37 H 1.09003 * 109.45097 * 61.39712 * 10 7 6 38 38 H 1.09003 * 109.49793 * 58.58411 * 11 10 7 39 39 H 1.09004 * 109.49722 * 178.64890 * 11 10 7 40 40 H 1.09005 * 109.58739 * 174.44417 * 12 11 10 41 41 H 1.09009 * 109.58531 * 294.85819 * 12 11 10 42 42 H 0.97006 * 119.99971 * 179.97438 * 17 16 14 43 43 H 1.09004 * 109.57822 * 293.81910 * 22 13 12 44 44 H 1.08998 * 109.58965 * 173.39541 * 22 13 12 45 45 H 1.07997 * 125.90208 * 0.02562 * 24 23 2 46 46 H 1.08997 * 109.46939 * 89.97367 * 27 26 25 47 47 H 1.08993 * 109.47692 * 209.97771 * 27 26 25 48 48 H 1.09008 * 109.46771 * 329.97668 * 27 26 25 49 49 H 1.08000 * 126.13126 * 180.24466 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 8 2.7297 -1.6965 -1.1191 6 7 1.7068 -0.2501 -2.4546 7 6 2.0975 -1.0038 -3.6484 8 6 1.5827 -2.4403 -3.5365 9 8 0.1734 -2.4243 -3.3014 10 6 3.6231 -1.0158 -3.7684 11 6 4.1417 0.4219 -3.8473 12 6 3.5647 1.1015 -5.0930 13 7 2.0996 0.9890 -5.0567 14 6 1.3115 2.1026 -5.1737 15 1 1.6643 3.0550 -4.8062 16 6 0.0590 2.0076 -5.7647 17 7 -0.2772 0.9184 -6.4226 18 14 -1.1491 3.4256 -5.6262 19 1 -0.5332 4.5259 -4.8418 20 1 -1.4918 3.9183 -6.9844 21 1 -2.3826 2.9600 -4.9426 22 6 1.4967 -0.3408 -4.8919 23 6 2.0324 -0.7103 1.2305 24 6 1.7739 -2.0408 1.5757 25 7 2.3784 -2.2940 2.7082 26 7 3.0411 -1.1307 3.1203 27 6 3.8401 -0.9796 4.3388 28 6 2.8173 -0.1750 2.1941 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.2138 0.5803 -2.5451 33 1 1.7903 -2.9739 -4.4641 34 1 2.0836 -2.9423 -2.7088 35 1 -0.2219 -3.3031 -3.2199 36 1 3.9124 -1.5562 -4.6697 37 1 4.0520 -1.5092 -2.8960 38 1 3.8317 0.9698 -2.9574 39 1 5.2300 0.4133 -3.9085 40 1 3.8511 2.1533 -5.1012 41 1 3.9469 0.6098 -5.9877 42 1 -1.1526 0.8519 -6.8353 43 1 1.7103 -0.9501 -5.7701 44 1 0.4185 -0.2404 -4.7676 45 1 1.1790 -2.7390 1.0056 46 1 4.8775 -1.2387 4.1274 47 1 3.7865 0.0533 4.6828 48 1 3.4509 -1.6411 5.1129 49 1 3.1953 0.8364 2.2185 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700005087.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:54 Heat of formation + Delta-G solvation = -6.113788 kcal Electronic energy + Delta-G solvation = -31361.793433 eV Core-core repulsion = 27325.481769 eV Total energy + Delta-G solvation = -4036.311664 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.21067 -41.18561 -38.90734 -37.30446 -35.37808 -35.20899 -34.12961 -33.39168 -31.87113 -31.26164 -30.10944 -27.29726 -27.26412 -26.58847 -25.25152 -23.92579 -22.68996 -22.02257 -21.76049 -20.56003 -19.92972 -18.75801 -18.13724 -18.04512 -17.33183 -16.90246 -16.29278 -16.20729 -16.13360 -15.71492 -15.38280 -15.18690 -15.09682 -14.70821 -14.65922 -14.54903 -14.11830 -13.93533 -13.74353 -13.56869 -13.42466 -13.36507 -13.03650 -12.97818 -12.80817 -12.70352 -12.48740 -12.44556 -12.39054 -12.13231 -11.90167 -11.63370 -11.43594 -11.40013 -11.14460 -10.94641 -10.50859 -10.31709 -10.13208 -9.64645 -9.24711 -8.57691 -7.79824 -5.30440 1.01601 1.51691 1.54590 1.63612 1.76594 1.84849 1.96475 2.55769 2.62178 3.36129 3.40609 3.66353 3.71525 3.89398 4.06213 4.15421 4.19438 4.28533 4.30537 4.37007 4.41329 4.45614 4.47638 4.52474 4.58279 4.70185 4.72020 4.86530 4.88456 4.89693 4.91139 4.99333 5.02923 5.08430 5.16918 5.23254 5.25445 5.38562 5.40384 5.53556 5.69699 5.72597 5.81397 5.90925 6.22668 6.47423 6.79555 6.95491 6.97611 7.20953 7.58639 7.89708 8.44695 9.25600 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014356 B = 0.003680 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.907122 B = 7606.847374 C = 8024.594796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.023 4.023 3 H 0.115 0.885 4 C 0.520 3.480 5 O -0.573 6.573 6 N -0.687 5.687 7 C 0.163 3.837 8 C 0.076 3.924 9 O -0.575 6.575 10 C -0.113 4.113 11 C -0.114 4.114 12 C 0.140 3.860 13 N -0.603 5.603 14 C -0.258 4.258 15 H 0.070 0.930 16 C -0.043 4.043 17 N -0.931 5.931 18 Si 0.963 3.037 19 H -0.262 1.262 20 H -0.299 1.299 21 H -0.292 1.292 22 C 0.194 3.806 23 C -0.226 4.226 24 C 0.067 3.933 25 N -0.340 5.340 26 N -0.382 5.382 27 C 0.095 3.905 28 C 0.065 3.935 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.402 0.598 33 H 0.045 0.955 34 H 0.060 0.940 35 H 0.386 0.614 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.011 0.989 42 H 0.248 0.752 43 H -0.002 1.002 44 H 0.070 0.930 45 H 0.168 0.832 46 H 0.080 0.920 47 H 0.118 0.882 48 H 0.089 0.911 49 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.230 -1.542 17.920 19.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.045 4.045 3 H 0.133 0.867 4 C 0.307 3.693 5 O -0.453 6.453 6 N -0.336 5.336 7 C 0.074 3.926 8 C -0.003 4.003 9 O -0.381 6.381 10 C -0.152 4.152 11 C -0.153 4.153 12 C 0.015 3.985 13 N -0.326 5.326 14 C -0.388 4.388 15 H 0.088 0.912 16 C -0.239 4.239 17 N -0.577 5.577 18 Si 0.791 3.209 19 H -0.186 1.186 20 H -0.227 1.227 21 H -0.219 1.219 22 C 0.067 3.933 23 C -0.238 4.238 24 C -0.118 4.118 25 N -0.162 5.162 26 N -0.164 5.164 27 C -0.045 4.045 28 C -0.082 4.082 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.237 0.763 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.234 0.766 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.029 0.971 42 H 0.057 0.943 43 H 0.016 0.984 44 H 0.089 0.911 45 H 0.186 0.814 46 H 0.098 0.902 47 H 0.136 0.864 48 H 0.107 0.893 49 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 7.016 -2.469 18.922 20.331 hybrid contribution -1.277 0.562 -1.415 1.987 sum 5.739 -1.907 17.507 18.522 Atomic orbital electron populations 1.21654 0.91920 1.02243 1.02802 1.19479 0.97327 0.99635 0.88106 0.86695 1.20893 0.79187 0.84439 0.84753 1.90557 1.39332 1.28286 1.87104 1.45774 1.57080 1.26321 1.04447 1.20929 0.94395 0.90054 0.87178 1.22457 0.81844 0.96620 0.99422 1.86519 1.21516 1.34547 1.95485 1.21678 0.94021 0.97954 1.01522 1.21774 0.99545 0.95180 0.98796 1.21102 0.84108 0.98536 0.94799 1.44240 1.00636 1.03291 1.84447 1.19475 0.98100 0.89557 1.31653 0.91243 1.25830 1.01507 0.99266 0.97254 1.70144 1.20865 1.29319 1.37352 0.85278 0.79108 0.79705 0.76764 1.18614 1.22683 1.21863 1.20623 0.98036 0.84481 0.90131 1.19571 1.09271 0.95201 0.99722 1.23595 0.98512 0.96416 0.93286 1.77248 1.15152 1.07593 1.16247 1.48724 1.40067 1.07653 1.19988 1.22160 0.94329 1.05519 0.82474 1.22789 0.98524 0.96944 0.89963 0.92399 0.93205 0.90154 0.76308 0.93730 0.92165 0.76607 0.92172 0.91377 0.92611 0.90742 0.92441 0.97114 0.94310 0.98373 0.91144 0.81449 0.90169 0.86390 0.89254 0.77461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.99 71.98 0.65 -2.43 16 2 C -0.02 -0.58 3.08 -12.29 -0.04 -0.62 16 3 H 0.12 2.42 8.11 -2.38 -0.02 2.40 16 4 C 0.52 16.85 6.52 87.65 0.57 17.42 16 5 O -0.57 -21.25 11.70 -3.03 -0.04 -21.29 16 6 N -0.69 -24.20 3.80 -422.58 -1.61 -25.80 16 7 C 0.16 6.20 0.45 3.68 0.00 6.20 16 8 C 0.08 2.69 5.53 71.98 0.40 3.09 16 9 O -0.57 -20.15 13.08 -148.98 -1.95 -22.10 16 10 C -0.11 -4.00 4.56 30.62 0.14 -3.86 16 11 C -0.11 -3.87 5.93 30.67 0.18 -3.69 16 12 C 0.14 5.61 6.52 86.35 0.56 6.18 16 13 N -0.60 -28.53 2.83 -698.91 -1.97 -30.50 16 14 C -0.26 -13.21 9.58 84.03 0.81 -12.40 16 15 H 0.07 3.45 7.86 -2.91 -0.02 3.43 16 16 C -0.04 -2.26 5.02 84.86 0.43 -1.84 16 17 N -0.93 -53.41 11.10 21.65 0.24 -53.17 16 18 Si 0.96 42.94 29.57 68.60 2.03 44.97 16 19 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 20 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 21 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 22 C 0.19 9.06 3.83 86.36 0.33 9.39 16 23 C -0.23 -5.79 4.37 -20.14 -0.09 -5.88 16 24 C 0.07 1.96 10.77 85.24 0.92 2.88 16 25 N -0.34 -9.88 12.58 -57.02 -0.72 -10.60 16 26 N -0.38 -8.33 4.01 -369.57 -1.48 -9.81 16 27 C 0.09 1.08 11.47 127.77 1.47 2.55 16 28 C 0.06 1.33 11.38 83.54 0.95 2.28 16 29 H 0.06 1.49 7.69 -2.39 -0.02 1.47 16 30 H 0.05 1.28 8.02 -2.39 -0.02 1.26 16 31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.40 14.94 7.99 -92.71 -0.74 14.20 16 33 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.06 2.16 6.16 -2.39 -0.01 2.15 16 35 H 0.39 9.72 9.12 -74.06 -0.68 9.04 16 36 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.07 2.46 6.43 -2.39 -0.02 2.44 16 38 H 0.06 1.92 7.53 -2.39 -0.02 1.91 16 39 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 40 H 0.06 2.23 7.94 -2.38 -0.02 2.21 16 41 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 42 H 0.25 13.93 8.31 -92.70 -0.77 13.16 16 43 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 44 H 0.07 3.79 5.97 -2.39 -0.01 3.78 16 45 H 0.17 4.89 8.06 -2.91 -0.02 4.87 16 46 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 49 H 0.21 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -71.29 388.50 1.33 -69.96 By element: Atomic # 1 Polarization: 39.52 SS G_CDS: -0.45 Total: 39.07 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: 7.27 Total: 19.27 kcal Atomic # 7 Polarization: -124.35 SS G_CDS: -5.54 Total: -129.89 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: -1.98 Total: -43.38 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -71.29 1.33 -69.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700005087.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.848 kcal (2) G-P(sol) polarization free energy of solvation -71.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds