Wall clock time and date at job start Tue Mar 31 2020 21:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42907 * 113.99421 * 2 1 4 4 H 1.08993 * 109.50944 * 29.90395 * 3 2 1 5 5 C 1.53132 * 109.50540 * 149.99779 * 3 2 1 6 6 C 1.53241 * 109.52722 * 189.77622 * 5 3 2 7 7 N 1.46585 * 108.78313 * 309.42681 * 6 5 3 8 8 C 1.34876 * 127.49608 * 197.20754 * 7 6 5 9 9 C 1.36566 * 106.78423 * 179.87224 * 8 7 6 10 10 C 1.47330 * 126.21217 * 180.02562 * 9 8 7 11 11 O 1.21626 * 119.99614 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00162 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00249 * 179.97438 * 12 10 9 14 14 C 1.52992 * 109.47252 * 179.97438 * 13 12 10 15 15 C 1.53006 * 109.46929 * 180.02562 * 14 13 12 16 16 H 1.08995 * 109.46969 * 55.00203 * 15 14 13 17 17 C 1.53002 * 109.47120 * 175.00267 * 15 14 13 18 18 N 1.46504 * 109.47070 * 294.99770 * 15 14 13 19 19 C 1.36938 * 119.99950 * 154.99492 * 18 15 14 20 20 H 1.08000 * 119.99793 * 0.02562 * 19 18 15 21 21 C 1.38808 * 120.00392 * 180.02562 * 19 18 15 22 22 N 1.31620 * 119.99578 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00274 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47365 * 60.00267 * 23 21 19 25 25 H 1.48505 * 109.47483 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47335 * 300.00217 * 23 21 19 27 27 N 1.35895 * 107.58232 * 0.02714 * 9 8 7 28 28 C 1.29796 * 108.84536 * 0.02576 * 27 9 8 29 29 C 1.51102 * 127.17597 * 179.87516 * 28 27 9 30 30 H 1.09006 * 109.47142 * 60.00861 * 1 2 3 31 31 H 1.09004 * 109.46726 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47675 * 300.00374 * 1 2 3 33 33 H 1.09003 * 109.46412 * 69.76414 * 5 3 2 34 34 H 1.08995 * 109.45445 * 309.79171 * 5 3 2 35 35 H 1.08997 * 109.58901 * 189.63384 * 6 5 3 36 36 H 1.09002 * 109.58540 * 69.21117 * 6 5 3 37 37 H 1.08002 * 126.60899 * 359.84686 * 8 7 6 38 38 H 0.97002 * 120.00006 * 359.97438 * 12 10 9 39 39 H 1.08998 * 109.47064 * 300.00577 * 13 12 10 40 40 H 1.09000 * 109.46923 * 59.99817 * 13 12 10 41 41 H 1.08992 * 109.47655 * 300.00055 * 14 13 12 42 42 H 1.09000 * 109.47467 * 60.00504 * 14 13 12 43 43 H 1.09009 * 109.47246 * 60.00019 * 17 15 14 44 44 H 1.08997 * 109.47183 * 179.97438 * 17 15 14 45 45 H 1.08998 * 109.46889 * 300.00016 * 17 15 14 46 46 H 0.96996 * 119.99866 * 335.00591 * 18 15 14 47 47 H 0.96996 * 120.00048 * 180.02562 * 22 21 19 48 48 H 1.09007 * 109.71830 * 76.30282 * 29 28 27 49 49 H 1.09004 * 109.75665 * 315.68163 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3445 2.0003 0.5122 5 6 3.3601 1.2644 0.7218 6 6 3.8692 2.6935 0.9379 7 7 3.8097 3.4137 -0.3374 8 6 4.4437 4.5584 -0.6642 9 6 4.0929 4.8499 -1.9514 10 6 4.5455 6.0126 -2.7349 11 8 5.3049 6.8224 -2.2379 12 7 4.1181 6.1790 -4.0021 13 6 4.5677 7.3355 -4.7810 14 6 3.9409 7.2859 -6.1758 15 6 4.4109 8.4934 -6.9893 16 1 5.5005 8.5203 -7.0032 17 6 3.8853 8.3792 -8.4217 18 7 3.8998 9.7229 -6.3782 19 6 4.5560 10.9088 -6.5738 20 1 5.4501 10.9378 -7.1789 21 6 4.0721 12.0737 -5.9944 22 7 2.9827 12.0382 -5.2566 23 14 4.9668 13.6914 -6.2618 24 1 5.0050 14.0019 -7.7134 25 1 4.2534 14.7767 -5.5416 26 1 6.3537 13.5818 -5.7425 27 7 3.2507 3.8727 -2.3787 28 6 3.0801 3.0167 -1.4181 29 6 2.2235 1.7722 -1.4455 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 4.0784 0.7106 0.1172 34 1 3.2410 0.7714 1.6865 35 1 4.8991 2.6647 1.2936 36 1 3.2409 3.1980 1.6720 37 1 5.1016 5.1340 -0.0298 38 1 3.5128 5.5330 -4.3986 39 1 4.2631 8.2531 -4.2777 40 1 5.6538 7.3135 -4.8701 41 1 4.2459 6.3684 -6.6788 42 1 2.8547 7.3078 -6.0870 43 1 2.7956 8.3524 -8.4078 44 1 4.2198 9.2397 -9.0012 45 1 4.2655 7.4645 -8.8764 46 1 3.0966 9.6969 -5.8350 47 1 2.6443 12.8522 -4.8520 48 1 2.7284 0.9907 -2.0136 49 1 1.2611 1.9973 -1.9052 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713410850.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:19 Heat of formation + Delta-G solvation = -20.218705 kcal Electronic energy + Delta-G solvation = -28385.718026 eV Core-core repulsion = 24348.794727 eV Total energy + Delta-G solvation = -4036.923299 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.69384 -39.31516 -38.77702 -36.45596 -35.83559 -34.19310 -33.26648 -32.15025 -30.55640 -29.13937 -28.78419 -27.98900 -27.10036 -24.89291 -23.91763 -23.25360 -22.56006 -21.80369 -20.23100 -19.67604 -19.43848 -17.84083 -17.33418 -17.10830 -16.56588 -16.24853 -15.85971 -15.46818 -15.45173 -15.13702 -14.63383 -14.31509 -14.07616 -14.03171 -13.84572 -13.76715 -13.37292 -13.35420 -13.04295 -12.85954 -12.37755 -12.32317 -12.09745 -11.94277 -11.89932 -11.48234 -11.44400 -10.95071 -10.82340 -10.65149 -10.55609 -10.49711 -10.29854 -10.20694 -9.99605 -9.97206 -9.66693 -9.54522 -8.83145 -8.76108 -8.48737 -6.86039 -5.66499 -2.94809 1.49583 2.23550 2.24615 2.91547 3.51466 3.52094 3.55643 3.56548 3.70014 3.78916 3.95480 3.97283 4.31025 4.45301 4.52405 4.57456 4.68338 4.72266 4.79198 4.83768 5.01934 5.07386 5.11830 5.17024 5.26917 5.36231 5.41389 5.48142 5.53397 5.66194 5.80500 5.82066 5.99645 6.20157 6.26389 6.29633 6.46825 6.48987 6.51362 6.61717 6.70634 6.81692 6.88918 6.96871 7.16173 7.55360 7.79396 7.95274 8.51980 8.57226 9.63011 10.20777 10.55565 11.56167 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019466 B = 0.001928 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.087651 B =14518.088581 C =15066.546054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.378 6.378 3 C 0.087 3.913 4 H 0.071 0.929 5 C -0.133 4.133 6 C 0.105 3.895 7 N -0.458 5.458 8 C 0.037 3.963 9 C -0.055 4.055 10 C 0.597 3.403 11 O -0.543 6.543 12 N -0.713 5.713 13 C 0.123 3.877 14 C -0.132 4.132 15 C 0.174 3.826 16 H 0.049 0.951 17 C -0.163 4.163 18 N -0.723 5.723 19 C -0.236 4.236 20 H 0.069 0.931 21 C -0.015 4.015 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.286 1.286 27 N -0.453 5.453 28 C 0.208 3.792 29 C -0.053 4.053 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.191 0.809 38 H 0.404 0.596 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.045 0.955 44 H 0.053 0.947 45 H 0.035 0.965 46 H 0.383 0.617 47 H 0.254 0.746 48 H 0.101 0.899 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.416 -29.082 14.101 32.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.296 6.296 3 C 0.028 3.972 4 H 0.089 0.911 5 C -0.171 4.171 6 C -0.017 4.017 7 N -0.141 5.141 8 C -0.102 4.102 9 C -0.184 4.184 10 C 0.383 3.617 11 O -0.421 6.421 12 N -0.363 5.363 13 C 0.000 4.000 14 C -0.171 4.171 15 C 0.064 3.936 16 H 0.067 0.933 17 C -0.223 4.223 18 N -0.365 5.365 19 C -0.367 4.367 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.213 1.213 27 N -0.172 5.172 28 C -0.055 4.055 29 C -0.092 4.092 30 H 0.065 0.935 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.208 0.792 38 H 0.238 0.762 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.054 0.946 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.119 0.881 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.981 -28.577 13.740 31.848 hybrid contribution 0.009 0.983 0.613 1.159 sum -2.972 -27.594 14.353 31.245 Atomic orbital electron populations 1.22886 0.80314 1.03232 1.00474 1.87931 1.20282 1.26446 1.94978 1.22133 0.94887 0.85570 0.94632 0.91089 1.21948 0.96627 0.95184 1.03304 1.22062 1.04160 0.91991 0.83455 1.45345 1.35824 1.19663 1.13285 1.22469 1.00745 0.89308 0.97653 1.20753 1.04726 0.98855 0.94090 1.16854 0.80360 0.83139 0.81385 1.90825 1.36362 1.44207 1.70669 1.45894 1.49352 1.27838 1.13224 1.21464 0.99014 0.88265 0.91258 1.22050 1.01016 0.99344 0.94657 1.20160 0.96955 0.85926 0.90587 0.93291 1.22421 1.00850 0.99688 0.99349 1.42450 1.31673 1.02578 1.59809 1.19184 1.06306 0.85753 1.25466 0.91276 1.24725 0.98006 0.97835 1.00482 1.69650 1.23497 1.27400 1.37611 0.86287 0.78896 0.83771 0.77353 1.21418 1.21822 1.21301 1.70358 1.16290 1.02714 1.27886 1.23214 0.99594 0.99206 0.83506 1.20682 0.99145 0.91217 0.98170 0.93471 0.89196 0.93745 0.89519 0.88140 0.87994 0.89040 0.79245 0.76188 0.89703 0.91825 0.91905 0.91584 0.93537 0.92786 0.94572 0.78271 0.93582 0.88082 0.88381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 10.82 101.05 1.09 1.20 16 2 O -0.38 -2.28 10.36 -35.23 -0.36 -2.65 16 3 C 0.09 0.46 2.63 -26.46 -0.07 0.39 16 4 H 0.07 0.34 7.76 -51.93 -0.40 -0.06 16 5 C -0.13 -0.53 5.59 -26.54 -0.15 -0.68 16 6 C 0.11 0.46 6.96 -3.87 -0.03 0.44 16 7 N -0.46 -4.08 3.11 -113.42 -0.35 -4.44 16 8 C 0.04 0.43 11.32 -16.82 -0.19 0.24 16 9 C -0.06 -0.81 6.98 -82.97 -0.58 -1.39 16 10 C 0.60 10.60 7.81 -12.57 -0.10 10.50 16 11 O -0.54 -11.43 16.88 5.25 0.09 -11.34 16 12 N -0.71 -11.79 5.55 -61.42 -0.34 -12.14 16 13 C 0.12 2.26 5.56 -4.05 -0.02 2.24 16 14 C -0.13 -2.22 4.87 -26.73 -0.13 -2.35 16 15 C 0.17 3.51 2.89 -67.92 -0.20 3.31 16 16 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 17 C -0.16 -2.99 9.49 37.16 0.35 -2.63 16 18 N -0.72 -18.36 4.57 -53.42 -0.24 -18.61 16 19 C -0.24 -6.68 9.93 -15.06 -0.15 -6.83 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 22 N -0.93 -28.95 13.06 55.49 0.72 -28.22 16 23 Si 0.91 23.12 29.55 -169.99 -5.02 18.10 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 N -0.45 -6.14 11.00 -7.01 -0.08 -6.21 16 28 C 0.21 2.16 7.64 -154.64 -1.18 0.98 16 29 C -0.05 -0.37 5.96 -27.49 -0.16 -0.54 16 30 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.04 0.14 8.09 -51.93 -0.42 -0.28 16 33 H 0.09 0.40 8.11 -51.93 -0.42 -0.02 16 34 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.19 1.85 8.06 -52.49 -0.42 1.43 16 38 H 0.40 5.88 8.18 -40.82 -0.33 5.55 16 39 H 0.08 1.89 7.75 -51.93 -0.40 1.49 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 44 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.38 10.41 7.80 -40.82 -0.32 10.09 16 47 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 48 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 405.18 15.07 6.11 6.11 Total: -1.00 -36.14 405.18 -9.27 -45.41 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -8.18 Total: 9.63 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -1.61 Total: 4.34 kcal Atomic # 7 Polarization: -69.32 SS G_CDS: -0.29 Total: -69.61 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -0.28 Total: -13.98 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.14 -9.27 -45.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713410850.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.196 kcal (2) G-P(sol) polarization free energy of solvation -36.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds