Wall clock time and date at job start Tue Mar 31 2020 21:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42907 * 113.99421 * 2 1 4 4 H 1.08993 * 109.50944 * 29.90395 * 3 2 1 5 5 C 1.53132 * 109.50540 * 149.99779 * 3 2 1 6 6 C 1.53241 * 109.52722 * 189.77622 * 5 3 2 7 7 N 1.46585 * 108.78313 * 309.42681 * 6 5 3 8 8 C 1.34876 * 127.49608 * 197.20754 * 7 6 5 9 9 C 1.36566 * 106.78423 * 179.87224 * 8 7 6 10 10 C 1.47330 * 126.21217 * 180.02562 * 9 8 7 11 11 O 1.21626 * 119.99614 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00162 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00249 * 179.97438 * 12 10 9 14 14 C 1.52992 * 109.47252 * 179.97438 * 13 12 10 15 15 C 1.53006 * 109.46929 * 180.02562 * 14 13 12 16 16 H 1.08995 * 109.46969 * 55.00203 * 15 14 13 17 17 C 1.53002 * 109.47120 * 175.00267 * 15 14 13 18 18 N 1.46504 * 109.47070 * 294.99770 * 15 14 13 19 19 C 1.36938 * 119.99950 * 154.99492 * 18 15 14 20 20 H 1.08000 * 119.99793 * 0.02562 * 19 18 15 21 21 C 1.38808 * 120.00392 * 180.02562 * 19 18 15 22 22 N 1.31620 * 119.99578 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00274 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47365 * 60.00267 * 23 21 19 25 25 H 1.48505 * 109.47483 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47335 * 300.00217 * 23 21 19 27 27 N 1.35895 * 107.58232 * 0.02714 * 9 8 7 28 28 C 1.29796 * 108.84536 * 0.02576 * 27 9 8 29 29 C 1.51102 * 127.17597 * 179.87516 * 28 27 9 30 30 H 1.09006 * 109.47142 * 60.00861 * 1 2 3 31 31 H 1.09004 * 109.46726 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47675 * 300.00374 * 1 2 3 33 33 H 1.09003 * 109.46412 * 69.76414 * 5 3 2 34 34 H 1.08995 * 109.45445 * 309.79171 * 5 3 2 35 35 H 1.08997 * 109.58901 * 189.63384 * 6 5 3 36 36 H 1.09002 * 109.58540 * 69.21117 * 6 5 3 37 37 H 1.08002 * 126.60899 * 359.84686 * 8 7 6 38 38 H 0.97002 * 120.00006 * 359.97438 * 12 10 9 39 39 H 1.08998 * 109.47064 * 300.00577 * 13 12 10 40 40 H 1.09000 * 109.46923 * 59.99817 * 13 12 10 41 41 H 1.08992 * 109.47655 * 300.00055 * 14 13 12 42 42 H 1.09000 * 109.47467 * 60.00504 * 14 13 12 43 43 H 1.09009 * 109.47246 * 60.00019 * 17 15 14 44 44 H 1.08997 * 109.47183 * 179.97438 * 17 15 14 45 45 H 1.08998 * 109.46889 * 300.00016 * 17 15 14 46 46 H 0.96996 * 119.99866 * 335.00591 * 18 15 14 47 47 H 0.96996 * 120.00048 * 180.02562 * 22 21 19 48 48 H 1.09007 * 109.71830 * 76.30282 * 29 28 27 49 49 H 1.09004 * 109.75665 * 315.68163 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3445 2.0003 0.5122 5 6 3.3601 1.2644 0.7218 6 6 3.8692 2.6935 0.9379 7 7 3.8097 3.4137 -0.3374 8 6 4.4437 4.5584 -0.6642 9 6 4.0929 4.8499 -1.9514 10 6 4.5455 6.0126 -2.7349 11 8 5.3049 6.8224 -2.2379 12 7 4.1181 6.1790 -4.0021 13 6 4.5677 7.3355 -4.7810 14 6 3.9409 7.2859 -6.1758 15 6 4.4109 8.4934 -6.9893 16 1 5.5005 8.5203 -7.0032 17 6 3.8853 8.3792 -8.4217 18 7 3.8998 9.7229 -6.3782 19 6 4.5560 10.9088 -6.5738 20 1 5.4501 10.9378 -7.1789 21 6 4.0721 12.0737 -5.9944 22 7 2.9827 12.0382 -5.2566 23 14 4.9668 13.6914 -6.2618 24 1 5.0050 14.0019 -7.7134 25 1 4.2534 14.7767 -5.5416 26 1 6.3537 13.5818 -5.7425 27 7 3.2507 3.8727 -2.3787 28 6 3.0801 3.0167 -1.4181 29 6 2.2235 1.7722 -1.4455 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 4.0784 0.7106 0.1172 34 1 3.2410 0.7714 1.6865 35 1 4.8991 2.6647 1.2936 36 1 3.2409 3.1980 1.6720 37 1 5.1016 5.1340 -0.0298 38 1 3.5128 5.5330 -4.3986 39 1 4.2631 8.2531 -4.2777 40 1 5.6538 7.3135 -4.8701 41 1 4.2459 6.3684 -6.6788 42 1 2.8547 7.3078 -6.0870 43 1 2.7956 8.3524 -8.4078 44 1 4.2198 9.2397 -9.0012 45 1 4.2655 7.4645 -8.8764 46 1 3.0966 9.6969 -5.8350 47 1 2.6443 12.8522 -4.8520 48 1 2.7284 0.9907 -2.0136 49 1 1.2611 1.9973 -1.9052 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713410850.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:18 Heat of formation + Delta-G solvation = -46.214204 kcal Electronic energy + Delta-G solvation = -28386.845276 eV Core-core repulsion = 24348.794727 eV Total energy + Delta-G solvation = -4038.050549 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.51346 -40.49080 -39.42154 -38.11694 -36.41987 -35.81029 -34.14452 -33.90232 -31.52812 -30.75206 -29.64407 -29.34515 -27.55328 -25.98355 -25.40755 -24.48932 -23.18991 -23.04127 -21.69948 -20.89151 -20.26610 -19.28167 -18.70388 -17.80770 -17.37367 -17.06243 -16.89112 -16.75958 -16.33685 -16.20702 -15.94242 -15.58037 -15.34080 -14.97733 -14.87770 -14.84352 -14.48409 -14.32167 -14.23345 -14.07757 -13.56746 -13.40486 -13.23708 -12.89272 -12.77918 -12.62287 -12.48226 -12.31780 -12.25081 -12.23269 -12.12176 -11.87127 -11.68514 -11.59093 -11.43324 -11.12080 -10.91226 -10.76998 -10.65677 -10.14055 -9.52414 -8.96632 -7.90491 -5.17739 0.50861 1.28380 1.46282 1.50118 1.55423 1.55600 2.27110 2.46481 2.53387 2.58567 3.11875 3.42942 3.43954 3.55996 3.82280 3.89357 3.91831 3.99124 4.03944 4.09476 4.21521 4.23842 4.35507 4.38769 4.44578 4.50087 4.57342 4.67172 4.69336 4.75347 4.79560 4.87523 4.89332 4.93807 4.95659 5.02134 5.07705 5.11153 5.21280 5.36804 5.39583 5.45793 5.55067 5.61928 5.96841 6.15149 6.31869 6.47945 6.81629 7.23518 7.37463 8.15180 8.37281 9.33004 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019466 B = 0.001928 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.087651 B =14518.088581 C =15066.546054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.391 6.391 3 C 0.089 3.911 4 H 0.078 0.922 5 C -0.128 4.128 6 C 0.098 3.902 7 N -0.449 5.449 8 C 0.052 3.948 9 C -0.096 4.096 10 C 0.593 3.407 11 O -0.588 6.588 12 N -0.704 5.704 13 C 0.135 3.865 14 C -0.116 4.116 15 C 0.165 3.835 16 H 0.045 0.955 17 C -0.152 4.152 18 N -0.735 5.735 19 C -0.233 4.233 20 H 0.075 0.925 21 C -0.081 4.081 22 N -0.971 5.971 23 Si 0.970 3.030 24 H -0.276 1.276 25 H -0.298 1.298 26 H -0.281 1.281 27 N -0.482 5.482 28 C 0.213 3.787 29 C -0.051 4.051 30 H 0.047 0.953 31 H 0.099 0.901 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.112 0.888 37 H 0.206 0.794 38 H 0.414 0.586 39 H 0.039 0.961 40 H 0.055 0.945 41 H 0.101 0.899 42 H 0.068 0.932 43 H 0.044 0.956 44 H 0.035 0.965 45 H 0.075 0.925 46 H 0.371 0.629 47 H 0.248 0.752 48 H 0.103 0.897 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.303 -31.614 14.699 35.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.309 6.309 3 C 0.030 3.970 4 H 0.096 0.904 5 C -0.165 4.165 6 C -0.022 4.022 7 N -0.130 5.130 8 C -0.090 4.090 9 C -0.224 4.224 10 C 0.380 3.620 11 O -0.469 6.469 12 N -0.355 5.355 13 C 0.011 3.989 14 C -0.154 4.154 15 C 0.057 3.943 16 H 0.063 0.937 17 C -0.212 4.212 18 N -0.375 5.375 19 C -0.365 4.365 20 H 0.093 0.907 21 C -0.273 4.273 22 N -0.622 5.622 23 Si 0.800 3.200 24 H -0.202 1.202 25 H -0.224 1.224 26 H -0.208 1.208 27 N -0.202 5.202 28 C -0.052 4.052 29 C -0.090 4.090 30 H 0.066 0.934 31 H 0.117 0.883 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.130 0.870 37 H 0.223 0.777 38 H 0.251 0.749 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.120 0.880 42 H 0.087 0.913 43 H 0.063 0.937 44 H 0.054 0.946 45 H 0.093 0.907 46 H 0.203 0.797 47 H 0.057 0.943 48 H 0.122 0.878 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.867 -31.190 14.304 34.433 hybrid contribution -0.037 1.586 0.467 1.653 sum -2.904 -29.605 14.770 33.212 Atomic orbital electron populations 1.23037 0.79408 1.04083 1.00992 1.87919 1.21371 1.26685 1.94956 1.22138 0.95850 0.85578 0.93401 0.90361 1.21951 0.95535 0.94816 1.04204 1.22504 1.06192 0.91889 0.81575 1.45619 1.34222 1.18698 1.14443 1.22681 0.99913 0.89757 0.96632 1.20427 1.07444 0.99173 0.95335 1.17349 0.79550 0.83576 0.81505 1.90781 1.38465 1.46086 1.71548 1.45755 1.49320 1.27297 1.13085 1.21152 0.98524 0.87219 0.92021 1.21908 1.00889 0.99388 0.93201 1.20448 0.96730 0.85126 0.92036 0.93700 1.22254 1.00688 1.00855 0.97415 1.42648 1.31163 1.03656 1.60076 1.19585 1.06039 0.86865 1.24048 0.90697 1.25539 0.99227 1.01304 1.01245 1.69818 1.25329 1.27707 1.39361 0.85254 0.77642 0.79591 0.77564 1.20229 1.22395 1.20779 1.70259 1.16985 1.03340 1.29623 1.23762 0.99058 0.99162 0.83191 1.20815 0.98577 0.89752 0.99885 0.93384 0.88288 0.92810 0.90049 0.85883 0.85792 0.87004 0.77745 0.74889 0.94260 0.92685 0.88026 0.91333 0.93723 0.94604 0.90650 0.79733 0.94302 0.87840 0.88167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 10.82 113.37 1.23 1.35 16 2 O -0.39 -3.80 10.36 -148.98 -1.54 -5.35 16 3 C 0.09 0.72 2.63 30.77 0.08 0.80 16 4 H 0.08 0.53 7.76 -2.39 -0.02 0.52 16 5 C -0.13 -0.61 5.59 30.72 0.17 -0.44 16 6 C 0.10 0.55 6.96 86.44 0.60 1.15 16 7 N -0.45 -7.13 3.11 -512.74 -1.60 -8.72 16 8 C 0.05 1.15 11.32 83.83 0.95 2.10 16 9 C -0.10 -2.86 6.98 40.52 0.28 -2.58 16 10 C 0.59 21.84 7.81 86.64 0.68 22.52 16 11 O -0.59 -25.97 16.88 -4.11 -0.07 -26.04 16 12 N -0.70 -23.91 5.55 -466.47 -2.59 -26.50 16 13 C 0.13 5.11 5.56 86.38 0.48 5.59 16 14 C -0.12 -3.78 4.87 30.59 0.15 -3.64 16 15 C 0.17 6.57 2.89 44.99 0.13 6.70 16 16 H 0.04 1.83 8.08 -2.39 -0.02 1.81 16 17 C -0.15 -5.31 9.49 71.98 0.68 -4.63 16 18 N -0.73 -38.09 4.57 -322.93 -1.48 -39.57 16 19 C -0.23 -13.41 9.93 84.03 0.83 -12.57 16 20 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 21 C -0.08 -4.88 5.50 84.86 0.47 -4.41 16 22 N -0.97 -62.09 13.06 21.65 0.28 -61.81 16 23 Si 0.97 48.37 29.55 68.60 2.03 50.39 16 24 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 25 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 26 H -0.28 -13.65 7.11 99.48 0.71 -12.95 16 27 N -0.48 -12.95 11.00 -176.08 -1.94 -14.88 16 28 C 0.21 4.15 7.64 138.05 1.05 5.20 16 29 C -0.05 -0.64 5.96 30.11 0.18 -0.46 16 30 H 0.05 0.27 8.14 -2.38 -0.02 0.25 16 31 H 0.10 0.37 8.14 -2.38 -0.02 0.35 16 32 H 0.05 0.21 8.09 -2.39 -0.02 0.19 16 33 H 0.08 0.52 8.11 -2.39 -0.02 0.50 16 34 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 35 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 37 H 0.21 3.80 8.06 -2.91 -0.02 3.78 16 38 H 0.41 12.11 8.18 -92.71 -0.76 11.35 16 39 H 0.04 1.85 7.75 -2.39 -0.02 1.84 16 40 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 44 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.37 20.86 7.80 -92.71 -0.72 20.14 16 47 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 48 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 49 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -81.58 405.18 0.54 -81.04 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: -0.53 Total: 34.74 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 7.97 Total: 16.70 kcal Atomic # 7 Polarization: -144.16 SS G_CDS: -7.32 Total: -151.48 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -1.61 Total: -31.39 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 2.03 Total: 50.39 kcal Total: -81.58 0.54 -81.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713410850.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.830 kcal (2) G-P(sol) polarization free energy of solvation -81.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds